Rh7AG284500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
30453708 .. 30455291
1584 bp
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UTR
Exon/CDS
Intron
Rh7AG284500.1

Sequence Viewer

Length: 1584 bp
ATGCAATTCTCAATGGATTTGAGAAGGCTTCCGATCTCCAAACCCGCTTCTCTCTTCTACCCAATCACGCGCCCCTTAACGGGCGTGACATTCACCTTCCAACGCCGCCACTACCCTCCCCAGCCGCCGCCGTTACAGCCTTTGAGTCCACCACGGCCTCCCAATCCGGTTTTGCTCAACTGGGTATCTTCTATTCTCTCAAACCCATCTTTGGATTCTTCTAAATGTGAATCTCTCATGCCCTTTTTGTCCCCTCATGAATTTGATCAGTTATTCTACTCCATTAGGTCCAATGTGAACCCCAAAACAGCTCTTCATTTCTTTCATTTTGCTTCTCAATCTTTTAAGTTTCGGTTTACTGTTCGATCTTTCTGTGTTTTGGTTCATTTGCTCATTGCTTCAAATCTTAGACCTCCTGCGAGGTTGCTTTTGATTCGTTTGATTGATGGGAATGTCCCAGTTTTGTGTGCTGACCCCAACAGCAAGCAAATTGAGATAGCCGTCGCAATGTCGGAGTTGAACAATGCGTCCCAACCGGCTCTGGGGATTCAAGCATTGGATATGTTAATTCATGTTTACTGTACCCAGTTCAAGAATTTGGGTTTTGGTTATGCTGTTGATGTGTTTGAGCATTTTTCGGATAAGGGTGTGTTTCCGTCTTTGAAGACTTGTAATGTTTTGCTGAGTTCTTTAGTGAAGGCTAACGAACTTGAGAAGAGCTGTCATGTATTTGAAGTTATGACTCGAGGTGTTTCTCCTAATGTTTTCTTGTTTACTACTGCAATTAATGTGTTTTGCAAGGGAGGGAAGGTGGATGATGCAATAGCTGTGCTCTCAAAAATGGAGAGCATTGGTGTTGCTCCAAATGTGGTTACTTACAATAGCGTTATCCACGGGCTATGTATGAGTAGAAGATTAGAGGAGGCTTTCCGGTTCAAGGAGAAGATGGTAAAGAATAATGTGAAGCCAAGTCTTATAACATACAATGTGCTCATTAATGGTTTAATTAAGCTGGAGAAGTTTTATGAGGCAAATTGTGTTTTCAAGGAAATGCGTAGTTGGGGATTTATCCCGAATGAGGTTGTATATAACACTCTGATTAATGGGTATTGTACAATGGGAAATATTGGAGAGGCACTCAAGATAAGGGATGATATGGTATCGAATGGGGTTACCCCTAATTCTGTTACTCTGAATTCGCTACTGCATGGATATTGTAAAAGTAATCAATTTGAGCATGCTGAGCAATTTTTGGACCAGATGCTAGCCAGTGGTTTACCAGTCAACCAAGTTGTTTCTTACTCAGTCATTGACTGGTTATGCATGAAATTTAGGTTTGATTCTACACTAAGATTCACTACCGAAATGTTTTTAAGAAACTTTAGGCCCAGTGATAGTTTGCTTACTACATTGTTTGTTGGGCTATGCAAAGATGGGAAGAATTTAGAGGCAATCAAACTTTGGTTTAGGCTATCGGAGAAGGGGTTTGCAGCCAACACAGCGACCACAAATGCTCTAATCCATGGACTTTGTGAATCTGGTAGTATCGAAGAGGTTGTTAGGCTACTCAAGGCAATGCTTTAG

Protein Analysis

527

Amino Acids

59.26

Weight (kDa)

8.89

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 204 - 332 1.7e-10 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 243 - 350 6.2e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 245 - 298 5.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 249 - 282 2e-10 PPR repeat
PPR_2 PF13041 253 - 301 2.3e-14 PPR repeat family
PPR_3 PF13812 277 - 333 1.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 285 - 317 2.2e-11 PPR repeat
PPR_2 PF13041 288 - 337 5e-18 PPR repeat family
PPR PF01535 291 - 321 1.9e-06 PPR repeat
PPR_3 PF13812 313 - 370 5.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 323 - 361 1.7e-08 PPR repeat family
PPR PF01535 326 - 356 6.5e-06 PPR repeat
PPR_3 PF13812 347 - 405 1e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 347 - 432 8.5e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 355 - 387 1.6e-10 PPR repeat
PPR_2 PF13041 358 - 407 1.2e-17 PPR repeat family
PPR PF01535 361 - 391 1.1e-07 PPR repeat
PPR_1 PF12854 389 - 421 1.4e-09 PPR repeat
PPR_2 PF13041 393 - 441 2e-09 PPR repeat family
PPR PF01535 396 - 426 2.1e-06 PPR repeat
PPR_2 PF13041 469 - 511 1.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 977
AccII CGCG 1 cut(s) 70
AciI CCGC 4 cut(s) 45, 106, 125, 128
AcsI RAATTY 5 cut(s) 260, 595, 1195, 1328, 1441
AfaI GTAC 2 cut(s) 583, 1114
AfiI CCNNNNNNNGG 6 cut(s) 79, 80, 211, 542, 937, 1078
AgsI TTSAA 8 cut(s) 402, 520, 551, 592, 664, 734, 937, 1045
AloI GAACNNNNNNTCC 2 cut(s) 512, 544
AluBI AGCT 4 cut(s) 311, 720, 827, 1012
AluI AGCT 4 cut(s) 311, 720, 827, 1012
Alw21I GWGCWC 2 cut(s) 834, 993
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 2 cut(s) 155, 1385
ApeKI GCWGC 1 cut(s) 1490
ApoI RAATTY 5 cut(s) 260, 595, 1195, 1328, 1441
AseI ATTAAT 3 cut(s) 786, 996, 1101
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 288, 1255, 1386
AsuHPI GGTGA 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 1264
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 2 cut(s) 288, 1255
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 834, 993
BbvI GCAGC 1 cut(s) 1502
BccI CCATC 4 cut(s) 214, 440, 940, 1427
BceAI ACGGC 3 cut(s) 115, 170, 485
BclI TGATCA 1 cut(s) 265
BfaI CTAG 1 cut(s) 1265
BisI GCNGC 4 cut(s) 106, 125, 128, 1491
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 4 cut(s) 107, 126, 129, 1492
Bme18I GGWCC 2 cut(s) 288, 1255
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 3 cut(s) 288, 1255, 1386
BmrI ACTGGG 4 cut(s) 190, 452, 580, 1383
BmsI GCATC 2 cut(s) 808, 1251
BmtI GCTAGC 1 cut(s) 1268
BmuI ACTGGG 4 cut(s) 190, 452, 580, 1383
BpiI GAAGAC 1 cut(s) 671
BplI GAGNNNNNCTC 2 cut(s) 1122, 1154
BpmI CTGGAG 1 cut(s) 1034
Bpu1102I GCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 3 cut(s) 731, 1124, 1553
BsaJI CCNNGG 3 cut(s) 152, 892, 1522
BsaWI WCCGGW 2 cut(s) 166, 930
BsaXI ACNNNNNCTCC 4 cut(s) 795, 825, 1469, 1499
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 80, 211, 542, 937, 1078
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 7 cut(s) 185, 458, 586, 1269, 1280, 1319, 1389
Bse3DI GCAATG 3 cut(s) 393, 513, 1581
BseDI CCNNGG 3 cut(s) 152, 892, 1522
BseGI GGATG 2 cut(s) 820, 1156
BseLI CCNNNNNNNGG 6 cut(s) 79, 80, 211, 542, 937, 1078
BseMI GCAATG 3 cut(s) 393, 513, 1581
BseMII CTCAG 3 cut(s) 674, 1233, 1317
BseNI ACTGG 7 cut(s) 185, 458, 586, 1269, 1280, 1319, 1389
BseRI GAGGAG 1 cut(s) 935
BseXI GCAGC 1 cut(s) 1502
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 157, 1387
BsiHKAI GWGCWC 2 cut(s) 834, 993
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 3 cut(s) 167, 536, 931
BslFI GGGAC 3 cut(s) 235, 440, 514
BslI CCNNNNNNNGG 6 cut(s) 79, 80, 211, 542, 937, 1078
BsmFI GGGAC 3 cut(s) 235, 440, 514
BsnI GGCC 2 cut(s) 157, 1387
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 2 cut(s) 834, 993
Bsp1407I TGTACA 1 cut(s) 1112
Bsp143I GATC 3 cut(s) 33, 265, 365
Bsp1720I GCTNAGC 1 cut(s) 1242
Bsp19I CCATGG 1 cut(s) 1522
BspACI CCGC 4 cut(s) 45, 106, 125, 128
BspANI GGCC 2 cut(s) 157, 1387
BspCNI CTCAG 3 cut(s) 675, 1234, 1316
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 1268
BspQI GCTCTTC 2 cut(s) 318, 710
BsrDI GCAATG 3 cut(s) 393, 513, 1581
BsrFI RCCGGY 1 cut(s) 535
BsrGI TGTACA 1 cut(s) 1112
BsrI ACTGG 7 cut(s) 185, 458, 586, 1269, 1280, 1319, 1389
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 152, 892, 1522
BssMI GATC 3 cut(s) 33, 265, 365
BssT1I CCWWGG 1 cut(s) 1522
Bst4CI ACNGT 2 cut(s) 361, 581
Bst6I CTCTTC 4 cut(s) 59, 318, 710, 1545
BstAUI TGTACA 1 cut(s) 1112
BstC8I GCNNGC 3 cut(s) 485, 1239, 1266
BstDEI CTNAG 5 cut(s) 407, 683, 1242, 1303, 1349
BstDSI CCRYGG 3 cut(s) 152, 892, 1522
BstEII GGTNACC 1 cut(s) 1171
BstF5I GGATG 2 cut(s) 820, 1156
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 36, 268, 368
BstMBI GATC 3 cut(s) 33, 265, 365
BstMWI GCNNNNNNNGC 3 cut(s) 136, 1243, 1499
BstNSI RCATGY 1 cut(s) 1241
BstPI GGTNACC 1 cut(s) 1171
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 1502
BstV2I GAAGAC 1 cut(s) 671
BsuRI GGCC 2 cut(s) 157, 1387
BtgI CCRYGG 3 cut(s) 152, 892, 1522
BtsCI GGATG 2 cut(s) 820, 1156
BtsIMutI CAGTG 2 cut(s) 1276, 1396
Cac8I GCNNGC 3 cut(s) 485, 1239, 1266
CciI TCATGA 1 cut(s) 256
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 288, 1255, 1386
CseI GACGC 1 cut(s) 516
Csp6I GTAC 2 cut(s) 582, 1113
CviAII CATG 8 cut(s) 238, 257, 572, 725, 1208, 1238, 1324, 1523
CviQI GTAC 2 cut(s) 582, 1113
DdeI CTNAG 5 cut(s) 407, 683, 1242, 1303, 1349
DpnI GATC 3 cut(s) 35, 267, 367
DpnII GATC 3 cut(s) 33, 265, 365
Eam1104I CTCTTC 4 cut(s) 59, 318, 710, 1545
EarI CTCTTC 4 cut(s) 59, 318, 710, 1545
Eco130I CCWWGG 1 cut(s) 1522
Eco47I GGWCC 2 cut(s) 288, 1255
Eco88I CYCGRG 1 cut(s) 744
Eco91I GGTNACC 1 cut(s) 1171
EcoO65I GGTNACC 1 cut(s) 1171
EcoRI GAATTC 1 cut(s) 1195
EcoT14I CCWWGG 1 cut(s) 1522
EcoT22I ATGCAT 1 cut(s) 1325
ErhI CCWWGG 1 cut(s) 1522
FaeI CATG 8 cut(s) 241, 260, 575, 728, 1211, 1241, 1327, 1526
FaqI GGGAC 3 cut(s) 235, 440, 514
FatI CATG 8 cut(s) 237, 256, 571, 724, 1207, 1237, 1323, 1522
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 106, 125, 128, 1491
FokI GGATG 2 cut(s) 827, 1163
Fsp4HI GCNGC 4 cut(s) 106, 125, 128, 1491
FspBI CTAG 1 cut(s) 1265
GlaI GCGC 1 cut(s) 71
GluI GCNGC 4 cut(s) 106, 125, 128, 1491
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 2 cut(s) 157, 1387
HapII CCGG 3 cut(s) 167, 536, 931
HgaI GACGC 1 cut(s) 516
HhaI GCGC 1 cut(s) 72
Hin1II CATG 8 cut(s) 241, 260, 575, 728, 1211, 1241, 1327, 1526
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 1285
HindII GTYRAC 1 cut(s) 1285
HinfI GANTC 9 cut(s) 145, 215, 230, 433, 547, 742, 1340, 1353, 1535
HpaII CCGG 3 cut(s) 167, 536, 931
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 7 cut(s) 149, 298, 357, 577, 774, 1277, 1285
Hpy188I TCNGA 6 cut(s) 33, 514, 640, 1098, 1194, 1477
Hpy188III TCNNGA 4 cut(s) 257, 592, 1072, 1141
Hpy8I GTNNAC 7 cut(s) 149, 298, 357, 577, 774, 1277, 1285
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 18, 106, 691, 802, 1474
HpyCH4III ACNGT 2 cut(s) 361, 581
HpyCH4V TGCA 8 cut(s) 4, 782, 798, 821, 1207, 1323, 1428, 1490
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 1243, 1499
HpyF3I CTNAG 5 cut(s) 407, 683, 1242, 1303, 1349
Hsp92II CATG 8 cut(s) 241, 260, 575, 728, 1211, 1241, 1327, 1526
HspAI GCGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 33, 265, 365
LguI GCTCTTC 2 cut(s) 318, 710
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 1 cut(s) 1502
LweI GCATC 2 cut(s) 808, 1251
MaeI CTAG 1 cut(s) 1265
MaeIII GTNAC 5 cut(s) 85, 132, 871, 1171, 1186
MalI GATC 3 cut(s) 35, 267, 367
MboI GATC 3 cut(s) 33, 265, 365
MhlI GDGCHC 2 cut(s) 834, 993
MlyI GAGTC 2 cut(s) 154, 736
MmeI TCCRAC 2 cut(s) 124, 492
Mph1103I ATGCAT 1 cut(s) 1325
MseI TTAA 9 cut(s) 77, 345, 566, 786, 996, 1004, 1008, 1101, 1373
MspI CCGG 3 cut(s) 167, 536, 931
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 136, 1243, 1499
NcoI CCATGG 1 cut(s) 1522
NdeII GATC 3 cut(s) 33, 265, 365
NheI GCTAGC 1 cut(s) 1264
NlaIII CATG 8 cut(s) 241, 260, 575, 728, 1211, 1241, 1327, 1526
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 1325
NspI RCATGY 1 cut(s) 1241
PacI TTAATTAA 1 cut(s) 1008
PaeI GCATGC 1 cut(s) 1241
PaeR7I CTCGAG 1 cut(s) 744
PagI TCATGA 1 cut(s) 256
PciSI GCTCTTC 2 cut(s) 318, 710
PfeI GAWTC 7 cut(s) 215, 230, 433, 547, 1340, 1353, 1535
PkrI GCNGC 4 cut(s) 107, 126, 129, 1492
PleI GAGTC 2 cut(s) 153, 736
PpsI GAGTC 2 cut(s) 153, 736
PshBI ATTAAT 3 cut(s) 786, 996, 1101
PsiI TTATAA 1 cut(s) 977
PspEI GGTNACC 1 cut(s) 1171
PspFI CCCAGC 1 cut(s) 120
PspPI GGNCC 3 cut(s) 288, 1255, 1386
PspXI VCTCGAGB 1 cut(s) 744
RsaI GTAC 2 cut(s) 583, 1114
RsaNI GTAC 2 cut(s) 582, 1113
SapI GCTCTTC 2 cut(s) 318, 710
SaqAI TTAA 9 cut(s) 77, 345, 566, 786, 996, 1004, 1008, 1101, 1373
SatI GCNGC 4 cut(s) 106, 125, 128, 1491
Sau3AI GATC 3 cut(s) 33, 265, 365
Sau96I GGNCC 3 cut(s) 288, 1255, 1386
SchI GAGTC 2 cut(s) 154, 736
SduI GDGCHC 2 cut(s) 834, 993
SfaNI GCATC 2 cut(s) 808, 1251
Sfr274I CTCGAG 1 cut(s) 744
SinI GGWCC 2 cut(s) 288, 1255
SlaI CTCGAG 1 cut(s) 744
SmlI CTYRAG 4 cut(s) 710, 744, 1139, 1568
SmoI CTYRAG 4 cut(s) 710, 744, 1139, 1568
SphI GCATGC 1 cut(s) 1241
SsiI CCGC 4 cut(s) 45, 106, 125, 128
SspI AATATT 1 cut(s) 1126
SspMI CTAG 1 cut(s) 1265
StyI CCWWGG 1 cut(s) 1522
TaaI ACNGT 2 cut(s) 361, 581
TaqI TCGA 4 cut(s) 364, 745, 1163, 1548
TatI WGTACW 1 cut(s) 1112
TauI GCSGC 3 cut(s) 108, 127, 130
TfiI GAWTC 7 cut(s) 215, 230, 433, 547, 1340, 1353, 1535
Tru1I TTAA 9 cut(s) 77, 345, 566, 786, 996, 1004, 1008, 1101, 1373
Tru9I TTAA 9 cut(s) 77, 345, 566, 786, 996, 1004, 1008, 1101, 1373
TscAI CASTG 2 cut(s) 1276, 1396
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 1490
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 6 cut(s) 273, 305, 314, 374, 560, 1340
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 2 cut(s) 1276, 1396
VpaK11BI GGWCC 2 cut(s) 288, 1255
VspI ATTAAT 3 cut(s) 786, 996, 1101
XapI RAATTY 5 cut(s) 260, 595, 1195, 1328, 1441
XceI RCATGY 1 cut(s) 1241
XhoI CTCGAG 1 cut(s) 744
XspI CTAG 1 cut(s) 1265
Zsp2I ATGCAT 1 cut(s) 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.