Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004377

Physical Location & Seq

Genomic Coordinates Reverse (-)

14875404 .. 14880229

Gene Structure 4826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15000.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCGCCTTATGATGAAAGATATGTCGATGTCAAGTTCATTGGAAAAATACCTGGCTCTGTCACCATAACTGTTGAAGAAGATTTTCAGAGATGGCGCCTTGTGTGTCTTGCATTGGGATTTACTTTACTATTGTTTGCACCAATTGTCAGCAATTGGGTACCTTTTTATTATAGCAGTTCAATGGTTATAGGAGTTTTTCTGGTCATTATAATCATTCTCTTCCAGGGAATGAAGCTGTTGCCAACTGGAAGGAAAAATGTCCTCTATCTTACCATATATGGATCAGTGCTTGGAGCAGGATCTTTCCTTGTTCCTCAGTTTTCACTGATGGTAAATTCTGTTCTTTTGAGTTTTGGGCTAAGTGAAGAGATGCATAACCCAGTCTCTATATTTTTACTAGTGGGAATTATCCCTGCGGGAGCTGCATTAGGGTACTGGATTGTGAGGGAGTTTGTTGTCTCAAAAGATGGGACAGTAGATGTTGGTATAGCACAATTTGTCAAGTGGGCTATGCGTATCATTGGAACAACCTCCATCTTGCAGAGCACTCTCGATACTCCTTTAGCAATGGGCGCTTTGGTTTCTTACTGGATTATCATGAAGTTGATTACTTCTCTGAAATGGCATCGCAAATCTCATCAGTCGGATGCTGGGAGTGGGAGTCCTTGGCTGCAGAAGGGAGAACAAGTCAAGGGTAGACAAAGTCGTCCAGGATTTCTTAGCAGGAGTCTATCTGCTTGGTCTGACTCTCCTGTTAAAGATTCCAAGTACGCACAAGATTTGCAGTTCCAAGAGGCTCTAATGTCCTCTTCTGCAATCACCTCCCAATCGACGCACAATGGCGGTTCCTCTTCCTCTTCATCATCGGCAACAATCCAAGCAACCCAAGCAATCCAATCCAACCCACCACAACCATCAACACAAATCCTTTGTGAGATTTGTGTTGAAATGAAAGAGGCTGATGAGTTTTTTCAAAATGAGGGCTGCGTTCACTCCTTCTGCTCTGACTGCATAACCAAGCATGTGGCATCCAAAATCCAAGCAAACATTCACGTAATTTTGTGCCCCGGCTTGGACTGCAGGGCTGTGCTGGAACTTGATGCTTGTATGCCAATACTTCCCAAAGAAGTCATAGAAAGGTGGAATGATGCCCTTTGTGAAGCTATGGTTTTAGGGGCACAAAGACTCTACTGTCCTTTCAGTGACTGCTCAACGGTTTTGATCGATCGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR NEMP

Protein Analysis

413

Amino Acids

45.35

Weight (kDa)

6.18

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28760
fragaria_vesca	FvH4_1g28540 FvH4_1g28540 FvH4_1g28540
malus_domestica	MD09G1231100.v1.1 MD12G1009700.v1.1 MD12G1009900.v1.1 MD14G1007100.v1.1
prunus_persica	Prupe.7G011900_v2.0.a1
pyrus_communis	pycom09g15000 pycom12g00750 pycom14g00560
rosa_chinensis	RchiOBHm_Chr3g0496221 RchiOBHm_Chr7g0220041
rosa_laevigata	RLG00000022546
rosa_multiflora	Rmu_sc0004080.1_g000008 Rmu_sc0012042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132890 Rroxscaffold_6G00389440
rosa_rugosa	Rorug03G0280700
rosa_samantha	Rh2BG396500 Rh3AG327700 Rh3BG363700 Rh3CG360700 Rh3DG363800 Rh4AG043100 Rh5AG246200 Rh5AG289100 Rh6AG095200 Rh6CG082300 Rh6DG078000
rosa_wichuraiana	Rw3G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AasI	GACNNNNNNGTC	2 cut(s)	708, 1194
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	2 cut(s)	96, 160
AccI	GTMKAC	1 cut(s)	700
AciI	CCGC	2 cut(s)	419, 846
AclWI	GGATC	2 cut(s)	292, 310
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	3 cut(s)	162, 437, 773
AfiI	CCNNNNNNNGG	1 cut(s)	1075
AgsI	TTSAA	4 cut(s)	77, 183, 950, 977
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	3 cut(s)	52, 225, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	1035, 1067
AluBI	AGCT	3 cut(s)	238, 425, 1166
AluI	AGCT	3 cut(s)	238, 425, 1166
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	391, 466
AlwI	GGATC	2 cut(s)	292, 310
AlwNI	CAGNNNCTG	1 cut(s)	1209
ApeKI	GCWGC	3 cut(s)	425, 673, 987
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	99, 578
AsuC2I	CCSGG	1 cut(s)	1071
AsuHPI	GGTGA	2 cut(s)	55, 814
BaeGI	GKGCMC	2 cut(s)	1070, 1183
BanI	GGYRCC	2 cut(s)	96, 160
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	3 cut(s)	412, 660, 974
BccI	CCATC	5 cut(s)	87, 325, 464, 545, 925
BciT130I	CCWGG	3 cut(s)	54, 227, 714
BcnI	CCSGG	1 cut(s)	1071
BcoDI	GTCTC	2 cut(s)	391, 466
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	674, 1081
BfoI	RGCGCY	2 cut(s)	100, 579
BisI	GCNGC	3 cut(s)	426, 674, 988
BlsI	GCNGC	3 cut(s)	427, 675, 989
Bme1390I	CCNGG	4 cut(s)	54, 227, 714, 1071
BmiI	GGNNCC	3 cut(s)	98, 162, 850
BmrFI	CCNGG	4 cut(s)	54, 227, 714, 1071
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	6 cut(s)	363, 637, 640, 1040, 1093, 1141
BmuI	ACTGGG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	1071
Bsa29I	ATCGAT	1 cut(s)	1227
BsaAI	YACGTR	1 cut(s)	1057
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	226, 668, 1069
BsaXI	ACNNNNNCTCC	4 cut(s)	649, 675, 679, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	1075
Bse1I	ACTGG	4 cut(s)	253, 383, 443, 596
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	54, 227, 714
BseCI	ATCGAT	1 cut(s)	1227
BseDI	CCNNGG	3 cut(s)	226, 668, 1069
BseGI	GGATG	2 cut(s)	655, 1031
BseLI	CCNNNNNNNGG	1 cut(s)	1075
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	4 cut(s)	253, 383, 443, 596
BseSI	GKGCMC	2 cut(s)	1070, 1183
BseXI	GCAGC	3 cut(s)	412, 660, 974
BseYI	CCCAGC	1 cut(s)	653
Bsh1285I	CGRYCG	1 cut(s)	1231
BshNI	GGYRCC	2 cut(s)	96, 160
BshVI	ATCGAT	1 cut(s)	1227
BsiEI	CGRYCG	1 cut(s)	1231
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	1071
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	1075
BsmAI	GTCTC	2 cut(s)	391, 466
BsmFI	GGGAC	1 cut(s)	487
Bsp1286I	GDGCHC	3 cut(s)	551, 1070, 1183
Bsp143I	GATC	4 cut(s)	284, 302, 1224, 1228
BspACI	CCGC	2 cut(s)	419, 846
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	1227
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	3 cut(s)	98, 162, 850
BspMAI	CTGCAG	2 cut(s)	678, 1085
BspPI	GGATC	2 cut(s)	292, 310
BspT107I	GGYRCC	2 cut(s)	96, 160
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	4 cut(s)	253, 383, 443, 596
BssECI	CCNNGG	3 cut(s)	226, 668, 1069
BssMI	GATC	4 cut(s)	284, 302, 1224, 1228
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	668
Bst2UI	CCWGG	3 cut(s)	54, 227, 714
Bst4CI	ACNGT	4 cut(s)	73, 478, 1196, 1219
Bst6I	CTCTTC	5 cut(s)	227, 363, 817, 859, 865
BstACI	GRCGYC	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	1057
BstDEI	CTNAG	3 cut(s)	318, 362, 722
BstF5I	GGATG	2 cut(s)	655, 1031
BstH2I	RGCGCY	2 cut(s)	100, 579
BstHHI	GCGC	2 cut(s)	99, 578
BstKTI	GATC	4 cut(s)	287, 305, 1227, 1231
BstMAI	GTCTC	2 cut(s)	391, 466
BstMBI	GATC	4 cut(s)	284, 302, 1224, 1228
BstMCI	CGRYCG	1 cut(s)	1231
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 575, 890, 1011, 1080
BstNI	CCWGG	3 cut(s)	54, 227, 714
BstNSI	RCATGY	1 cut(s)	1028
BstSCI	CCNGG	4 cut(s)	52, 225, 712, 1069
BstSFI	CTRYAG	2 cut(s)	674, 1081
BstSLI	GKGCMC	2 cut(s)	1070, 1183
BstV1I	GCAGC	3 cut(s)	412, 660, 974
BstX2I	RGATCY	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	1227
BsuTUI	ATCGAT	1 cut(s)	1227
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	655, 1031
BtsIMutI	CAGTG	3 cut(s)	294, 326, 1210
CaiI	CAGNNNCTG	1 cut(s)	1209
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	2 cut(s)	99, 578
ClaI	ATCGAT	1 cut(s)	1227
CseI	GACGC	1 cut(s)	844
Csp6I	GTAC	3 cut(s)	161, 436, 772
CviAII	CATG	2 cut(s)	601, 1025
CviQI	GTAC	3 cut(s)	161, 436, 772
DdeI	CTNAG	3 cut(s)	318, 362, 722
DinI	GGCGCC	1 cut(s)	98
DpnI	GATC	4 cut(s)	286, 304, 1226, 1230
DpnII	GATC	4 cut(s)	284, 302, 1224, 1228
DrdI	GACNNNNNNGTC	2 cut(s)	708, 1194
DseDI	GACNNNNNNGTC	2 cut(s)	708, 1194
Eam1104I	CTCTTC	5 cut(s)	227, 363, 817, 859, 865
EarI	CTCTTC	5 cut(s)	227, 363, 817, 859, 865
Eco130I	CCWWGG	1 cut(s)	668
EcoRII	CCWGG	3 cut(s)	52, 225, 712
EcoT14I	CCWWGG	1 cut(s)	668
EcoT22I	ATGCAT	1 cut(s)	378
EgeI	GGCGCC	1 cut(s)	98
EheI	GGCGCC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	668
FaeI	CATG	2 cut(s)	604, 1028
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	600, 1024
FauI	CCCGC	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	426, 674, 988
FokI	GGATG	2 cut(s)	662, 1018
Fsp4HI	GCNGC	3 cut(s)	426, 674, 988
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	98, 577
GluI	GCNGC	3 cut(s)	426, 674, 988
GsaI	CCCAGC	1 cut(s)	657
HaeII	RGCGCY	2 cut(s)	100, 579
HapII	CCGG	1 cut(s)	1071
HgaI	GACGC	1 cut(s)	844
HhaI	GCGC	2 cut(s)	99, 578
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	604, 1028
Hin6I	GCGC	2 cut(s)	97, 576
HinP1I	GCGC	2 cut(s)	97, 576
HinfI	GANTC	5 cut(s)	664, 730, 749, 764, 1188
HpaII	CCGG	1 cut(s)	1071
HphI	GGTGA	2 cut(s)	55, 814
Hpy166II	GTNNAC	2 cut(s)	701, 994
Hpy188I	TCNGA	5 cut(s)	90, 621, 649, 748, 1009
Hpy188III	TCNNGA	2 cut(s)	554, 601
Hpy8I	GTNNAC	2 cut(s)	701, 994
Hpy99I	CGWCG	1 cut(s)	838
HpyAV	CCTTC	3 cut(s)	246, 673, 1009
HpyCH4III	ACNGT	4 cut(s)	73, 478, 1196, 1219
HpyCH4IV	ACGT	1 cut(s)	1056
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 575, 890, 1011, 1080
HpyF3I	CTNAG	3 cut(s)	318, 362, 722
HpySE526I	ACGT	1 cut(s)	1056
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	604, 1028
HspAI	GCGC	2 cut(s)	97, 576
KasI	GGCGCC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	164
Kzo9I	GATC	4 cut(s)	284, 302, 1224, 1228
LmnI	GCTCC	2 cut(s)	296, 422
Lsp1109I	GCAGC	3 cut(s)	412, 660, 974
LweI	GCATC	6 cut(s)	363, 637, 640, 1040, 1093, 1141
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	1056
MaeIII	GTNAC	2 cut(s)	61, 1205
MalI	GATC	4 cut(s)	286, 304, 1226, 1230
MboI	GATC	4 cut(s)	284, 302, 1224, 1228
MboII	GAAGA	7 cut(s)	89, 92, 214, 380, 804, 846, 852
MfeI	CAATTG	2 cut(s)	144, 154
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	3 cut(s)	551, 1070, 1183
MluCI	AATT	6 cut(s)	144, 154, 337, 408, 497, 1059
Mly113I	GGCGCC	1 cut(s)	97
MlyI	GAGTC	4 cut(s)	673, 739, 743, 1182
MmeI	TCCRAC	2 cut(s)	627, 927
Mph1103I	ATGCAT	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	759
MspI	CCGG	1 cut(s)	1071
MspR9I	CCNGG	4 cut(s)	54, 227, 714, 1071
MunI	CAATTG	2 cut(s)	144, 154
MvaI	CCWGG	3 cut(s)	54, 227, 714
MwoI	GCNNNNNNNGC	5 cut(s)	425, 575, 890, 1011, 1080
NarI	GGCGCC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	1071
NdeII	GATC	4 cut(s)	284, 302, 1224, 1228
NlaIII	CATG	2 cut(s)	604, 1028
NlaIV	GGNNCC	3 cut(s)	98, 162, 850
NmuCI	GTSAC	2 cut(s)	61, 1205
NsiI	ATGCAT	1 cut(s)	378
NspI	RCATGY	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	764
PflFI	GACNNNGTC	1 cut(s)	705
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	3 cut(s)	427, 675, 989
Ple19I	CGATCG	1 cut(s)	1231
PleI	GAGTC	4 cut(s)	672, 738, 743, 1182
PluTI	GGCGCC	1 cut(s)	100
PpsI	GAGTC	4 cut(s)	672, 738, 743, 1182
Ppu21I	YACGTR	1 cut(s)	1057
PsiI	TTATAA	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	52, 225, 712
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	3 cut(s)	52, 225, 712
PspN4I	GGNNCC	3 cut(s)	98, 162, 850
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	2 cut(s)	678, 1085
PstNI	CAGNNNCTG	1 cut(s)	1209
PsuI	RGATCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	705
PvuI	CGATCG	1 cut(s)	1231
RsaI	GTAC	3 cut(s)	162, 437, 773
RsaNI	GTAC	3 cut(s)	161, 436, 772
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	3 cut(s)	426, 674, 988
Sau3AI	GATC	4 cut(s)	284, 302, 1224, 1228
SchI	GAGTC	4 cut(s)	673, 739, 743, 1182
ScrFI	CCNGG	4 cut(s)	54, 227, 714, 1071
SduI	GDGCHC	3 cut(s)	551, 1070, 1183
SetI	ASST	9 cut(s)	55, 166, 240, 427, 536, 827, 1059, 1145, 1168
SfaNI	GCATC	6 cut(s)	363, 637, 640, 1040, 1093, 1141
SfcI	CTRYAG	2 cut(s)	674, 1081
SfoI	GGCGCC	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	6 cut(s)	144, 154, 337, 408, 497, 1059
SsiI	CCGC	2 cut(s)	419, 846
SspDI	GGCGCC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	52, 225, 712, 1069
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	4 cut(s)	73, 478, 1196, 1219
TaiI	ACGT	1 cut(s)	1059
TaqI	TCGA	5 cut(s)	27, 555, 833, 1227, 1231
TasI	AATT	6 cut(s)	144, 154, 337, 408, 497, 1059
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	3 cut(s)	294, 333, 1210
TseFI	GTSAC	2 cut(s)	61, 1205
TseI	GCWGC	3 cut(s)	425, 673, 987
Tsp45I	GTSAC	2 cut(s)	61, 1205
TspDTI	ATGAA	6 cut(s)	28, 30, 248, 617, 852, 968
TspRI	CASTG	3 cut(s)	294, 333, 1210
Tth111I	GACNNNGTC	1 cut(s)	705
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	1028
XmiI	GTMKAC	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.