Rh4AG043100

NEMP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004377
Physical Location & Seq
Forward (+)
8960536 .. 8964292
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG043100.1

Sequence Viewer

Length: 708 bp
ATGGCTACCCTTCCTCTCTTCGTTTTCTCTCTCTTTCTTTCGACCATCTCATTCTTTTGTTCCACTACCCCTAACGGGAAAGGTATTGATCTTGAAAATCCAGTACTAAATGTCAACCCAGCACCGTTTTCTCTTTCTGGGCATTCGCCTACCGCTGGTTCTAAAGATGTTTTATTTTGTGAACGGGTTCGAGTTTCTGGTGTACCTAGATCAAAAATTGGGAGTTATGCAAATTCCTTTCGGATTACTCTGTCTCCATCTGTCTTAATCGCAGAGAGGTTGCATAGCAAAATTGAGGTCTGTTTTCACTGTAATGATTCGCTTGGACTCTGTCAGTGTAGAAATGATGAGTGGAAAACTCTCGAGAAAGGGCTATGGGAATCTGTCATGTCCCCTTATGAGGAGAAATATGTTGATGTCAAGTACATTGGCGATTTAATTGGGTCTTCCACCATCACTGTTGAAGAAGTTTCTCAGCAATGGCGCCTTTGGTTTCTAGCAGTGGGATTCATTTTACTATTGCTGGCACCAAGCATCAGTAGTTGGGTTCATTTTTATTATAGCACTTCAATGGTTATAGGAGTTTTTATGGTCATTATATTCCTTCTCATCCAAGCTGTCGAGTTGCCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTCAAAGCACCTGCCCAAGCAAGGCAAATGGGGGGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NEMP

Protein Analysis

235

Amino Acids

26.15

Weight (kDa)

6.89

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEMP PF10225 151 - 207 2e-14 NEMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 685
Acc36I ACCTGC 1 cut(s) 685
AccB1I GGYRCC 2 cut(s) 483, 526
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 484
AfaI GTAC 3 cut(s) 105, 204, 425
AfiI CCNNNNNNNGG 4 cut(s) 75, 155, 400, 687
AgsI TTSAA 4 cut(s) 95, 464, 570, 640
AluBI AGCT 1 cut(s) 617
AluI AGCT 1 cut(s) 617
Alw26I GTCTC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 362
ApoI RAATTY 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 486
AvaI CYCGRG 1 cut(s) 362
BanI GGYRCC 2 cut(s) 483, 526
BbsI GAAGAC 1 cut(s) 438
BccI CCATC 3 cut(s) 53, 265, 461
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 2 cut(s) 207, 497
BfoI RGCGCY 1 cut(s) 487
BfuAI ACCTGC 1 cut(s) 685
BmcAI AGTACT 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 485, 528
BmsI GCATC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 484
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 155, 400, 687
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 485
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 4 cut(s) 75, 155, 400, 687
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 416
BseYI CCCAGC 1 cut(s) 118
BshNI GGYRCC 2 cut(s) 483, 526
BsiHKCI CYCGRG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 4 cut(s) 75, 155, 400, 687
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 2 cut(s) 88, 209
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 485, 528
BspMI ACCTGC 1 cut(s) 685
BspT107I GGYRCC 2 cut(s) 483, 526
BsrDI GCAATG 1 cut(s) 485
BsrI ACTGG 1 cut(s) 101
BssMI GATC 2 cut(s) 88, 209
BssNI GRCGYC 1 cut(s) 484
Bst4CI ACNGT 3 cut(s) 126, 311, 460
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 609
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 2 cut(s) 91, 212
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 88, 209
BstV2I GAAGAC 1 cut(s) 438
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 4 cut(s) 307, 341, 456, 507
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 525
CfoI GCGC 1 cut(s) 486
Csp6I GTAC 3 cut(s) 104, 203, 424
CviAII CATG 1 cut(s) 388
CviJI RGCY 3 cut(s) 5, 373, 617
CviKI_1 RGCY 3 cut(s) 5, 373, 617
CviQI GTAC 3 cut(s) 104, 203, 424
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 1 cut(s) 485
DpnI GATC 2 cut(s) 90, 211
DpnII GATC 2 cut(s) 88, 209
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 362
EgeI GGCGCC 1 cut(s) 485
EheI GGCGCC 1 cut(s) 485
FaeI CATG 1 cut(s) 391
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 387
FokI GGATG 1 cut(s) 596
FspBI CTAG 2 cut(s) 207, 497
GlaI GCGC 1 cut(s) 485
GsaI CCCAGC 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 487
HhaI GCGC 1 cut(s) 486
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 317, 327, 380, 507
Hpy166II GTNNAC 3 cut(s) 115, 182, 203
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 4 cut(s) 92, 362, 364, 637
Hpy8I GTNNAC 3 cut(s) 115, 182, 203
HpyAV CCTTC 2 cut(s) 20, 614
HpyCH4III ACNGT 3 cut(s) 126, 311, 460
HpyCH4V TGCA 3 cut(s) 230, 283, 704
HpyF3I CTNAG 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 1 cut(s) 484
KasI GGCGCC 1 cut(s) 483
Kzo9I GATC 2 cut(s) 88, 209
LpnPI CCDG 7 cut(s) 114, 123, 132, 141, 183, 509, 690
LweI GCATC 1 cut(s) 543
MaeI CTAG 2 cut(s) 207, 497
MalI GATC 2 cut(s) 90, 211
MboI GATC 2 cut(s) 88, 209
MboII GAAGA 4 cut(s) 10, 438, 476, 625
MluCI AATT 4 cut(s) 216, 232, 291, 438
Mly113I GGCGCC 1 cut(s) 484
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 4 cut(s) 24, 270, 289, 394
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 266, 437
MslI CAYNNNNRTG 2 cut(s) 312, 569
MspA1I CMGCKG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 142
NarI GGCGCC 1 cut(s) 484
NdeII GATC 2 cut(s) 88, 209
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 2 cut(s) 485, 528
PaeR7I CTCGAG 1 cut(s) 362
PaqCI CACCTGC 1 cut(s) 685
PctI GAATGC 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 317, 380, 507
PflFI GACNNNGTC 1 cut(s) 330
PleI GAGTC 1 cut(s) 321
PluTI GGCGCC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 485, 528
PsyI GACNNNGTC 1 cut(s) 330
RsaI GTAC 3 cut(s) 105, 204, 425
RsaNI GTAC 3 cut(s) 104, 203, 424
RseI CAYNNNNRTG 2 cut(s) 312, 569
SaqAI TTAA 2 cut(s) 266, 437
Sau3AI GATC 2 cut(s) 88, 209
ScaI AGTACT 1 cut(s) 105
SchI GAGTC 1 cut(s) 321
SetI ASST 7 cut(s) 85, 208, 281, 300, 619, 653, 679
SfaNI GCATC 1 cut(s) 543
SfoI GGCGCC 1 cut(s) 485
Sfr274I CTCGAG 1 cut(s) 362
SlaI CTCGAG 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 312, 569
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 216, 232, 291, 438
SsiI CCGC 1 cut(s) 153
SspDI GGCGCC 1 cut(s) 483
SspMI CTAG 2 cut(s) 207, 497
TaaI ACNGT 3 cut(s) 126, 311, 460
TaqI TCGA 4 cut(s) 41, 190, 363, 621
TasI AATT 4 cut(s) 216, 232, 291, 438
TatI WGTACW 2 cut(s) 103, 423
TfiI GAWTC 3 cut(s) 317, 380, 507
Tru1I TTAA 2 cut(s) 266, 437
Tru9I TTAA 2 cut(s) 266, 437
TscAI CASTG 4 cut(s) 314, 341, 463, 507
TspDTI ATGAA 2 cut(s) 499, 539
TspRI CASTG 4 cut(s) 314, 341, 463, 507
Tth111I GACNNNGTC 1 cut(s) 330
XapI RAATTY 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 207, 497
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.