NEMP family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28760 |
| fragaria_vesca | FvH4_1g28540 FvH4_1g28540 FvH4_1g28540 |
| malus_domestica | MD09G1231100.v1.1 MD12G1009700.v1.1 MD12G1009900.v1.1 MD14G1007100.v1.1 |
| prunus_persica | Prupe.7G011900_v2.0.a1 |
| pyrus_communis | pycom09g15000 pycom12g00750 pycom14g00560 |
| rosa_chinensis | RchiOBHm_Chr3g0496221 RchiOBHm_Chr7g0220041 |
| rosa_laevigata | RLG00000022546 |
| rosa_multiflora | Rmu_sc0004080.1_g000008 Rmu_sc0012042.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00132890 Rroxscaffold_6G00389440 |
| rosa_rugosa | Rorug03G0280700 |
| rosa_samantha | Rh2BG396500 Rh3AG327700 Rh3BG363700 Rh3CG360700 Rh3DG363800 Rh4AG043100 Rh5AG246200 Rh5AG289100 Rh6AG095200 Rh6CG082300 Rh6DG078000 |
| rosa_wichuraiana | Rw3G028700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 602 |
| AarI | CACCTGC | 1 cut(s) | 82 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1098, 1448 |
| Acc36I | ACCTGC | 2 cut(s) | 82, 1107 |
| Acc65I | GGTACC | 1 cut(s) | 550 |
| AccB1I | GGYRCC | 5 cut(s) | 130, 486, 529, 550, 1213 |
| AccI | GTMKAC | 2 cut(s) | 257, 1090 |
| AciI | CCGC | 5 cut(s) | 21, 809, 1312, 1373, 1378 |
| AclWI | GGATC | 3 cut(s) | 682, 700, 1435 |
| AcsI | RAATTY | 4 cut(s) | 294, 727, 742, 1106 |
| AcuI | CTGAAG | 2 cut(s) | 350, 1365 |
| AcyI | GRCGYC | 2 cut(s) | 131, 487 |
| AdeI | CACNNNGTG | 1 cut(s) | 1252 |
| AfaI | GTAC | 4 cut(s) | 114, 552, 827, 1232 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1084, 1187 |
| AflII | CTTAAG | 2 cut(s) | 242, 1481 |
| AgsI | TTSAA | 7 cut(s) | 104, 299, 467, 573, 732, 742, 1239 |
| AhlI | ACTAGT | 1 cut(s) | 790 |
| AjnI | CCWGG | 5 cut(s) | 157, 442, 615, 1077, 1208 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1387, 1419 |
| AluBI | AGCT | 6 cut(s) | 145, 384, 628, 815, 1319, 1387 |
| AluI | AGCT | 6 cut(s) | 145, 384, 628, 815, 1319, 1387 |
| Alw21I | GWGCWC | 4 cut(s) | 147, 386, 941, 1463 |
| Alw26I | GTCTC | 3 cut(s) | 56, 781, 856 |
| AlwI | GGATC | 3 cut(s) | 682, 700, 1435 |
| ApeKI | GCWGC | 3 cut(s) | 815, 1063, 1334 |
| ApoI | RAATTY | 4 cut(s) | 294, 727, 742, 1106 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 474 |
| Asp718I | GGTACC | 1 cut(s) | 550 |
| AspLEI | GCGC | 3 cut(s) | 133, 489, 968 |
| AspS9I | GGNCC | 1 cut(s) | 1375 |
| AsuC2I | CCSGG | 1 cut(s) | 128 |
| AsuHPI | GGTGA | 2 cut(s) | 63, 445 |
| AvaII | GGWCC | 1 cut(s) | 1375 |
| BaeGI | GKGCMC | 2 cut(s) | 193, 1216 |
| BanI | GGYRCC | 5 cut(s) | 130, 486, 529, 550, 1213 |
| BanII | GRGCYC | 3 cut(s) | 8, 147, 386 |
| BauI | CACGAG | 1 cut(s) | 192 |
| Bbv12I | GWGCWC | 4 cut(s) | 147, 386, 941, 1463 |
| BbvI | GCAGC | 3 cut(s) | 802, 1050, 1346 |
| BccI | CCATC | 4 cut(s) | 477, 715, 854, 1210 |
| BceAI | ACGGC | 1 cut(s) | 1031 |
| BciT130I | CCWGG | 5 cut(s) | 159, 444, 617, 1079, 1210 |
| BcnI | CCSGG | 1 cut(s) | 128 |
| BcoDI | GTCTC | 3 cut(s) | 56, 781, 856 |
| BcuI | ACTAGT | 1 cut(s) | 790 |
| BfaI | CTAG | 4 cut(s) | 116, 791, 1122, 1322 |
| BfmI | CTRYAG | 2 cut(s) | 1064, 1437 |
| BfoI | RGCGCY | 3 cut(s) | 134, 490, 969 |
| BfrI | CTTAAG | 2 cut(s) | 242, 1481 |
| BfuAI | ACCTGC | 2 cut(s) | 82, 1107 |
| BisI | GCNGC | 3 cut(s) | 816, 1064, 1335 |
| BlsI | GCNGC | 3 cut(s) | 817, 1065, 1336 |
| BmcAI | AGTACT | 2 cut(s) | 114, 1232 |
| Bme1390I | CCNGG | 6 cut(s) | 128, 159, 444, 617, 1079, 1210 |
| Bme18I | GGWCC | 1 cut(s) | 1375 |
| BmgT120I | GGNCC | 1 cut(s) | 1375 |
| BmiI | GGNNCC | 6 cut(s) | 132, 488, 531, 552, 919, 1215 |
| BmrFI | CCNGG | 6 cut(s) | 128, 159, 444, 617, 1079, 1210 |
| BmrI | ACTGGG | 2 cut(s) | 104, 767 |
| BmsI | GCATC | 4 cut(s) | 753, 1027, 1030, 1346 |
| BmuI | ACTGGG | 2 cut(s) | 104, 767 |
| BpmI | CTGGAG | 1 cut(s) | 1192 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| BpuMI | CCSGG | 1 cut(s) | 128 |
| Bsa29I | ATCGAT | 1 cut(s) | 1468 |
| BsaHI | GRCGYC | 2 cut(s) | 131, 487 |
| BsaJI | CCNNGG | 2 cut(s) | 616, 1209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1039, 1069 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1084, 1187 |
| Bse1I | ACTGG | 4 cut(s) | 110, 643, 773, 833 |
| Bse3DI | GCAATG | 1 cut(s) | 966 |
| BseBI | CCWGG | 5 cut(s) | 159, 444, 617, 1079, 1210 |
| BseCI | ATCGAT | 1 cut(s) | 1468 |
| BseDI | CCNNGG | 2 cut(s) | 616, 1209 |
| BseGI | GGATG | 5 cut(s) | 123, 355, 1045, 1202, 1294 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1084, 1187 |
| BseMI | GCAATG | 1 cut(s) | 966 |
| BseMII | CTCAG | 1 cut(s) | 162 |
| BseNI | ACTGG | 4 cut(s) | 110, 643, 773, 833 |
| BseRI | GAGGAG | 4 cut(s) | 7, 23, 26, 773 |
| BseSI | GKGCMC | 2 cut(s) | 193, 1216 |
| BseXI | GCAGC | 3 cut(s) | 802, 1050, 1346 |
| BseYI | CCCAGC | 1 cut(s) | 1043 |
| BsgI | GTGCAG | 1 cut(s) | 1274 |
| BshNI | GGYRCC | 5 cut(s) | 130, 486, 529, 550, 1213 |
| BshVI | ATCGAT | 1 cut(s) | 1468 |
| BsiHKAI | GWGCWC | 4 cut(s) | 147, 386, 941, 1463 |
| BsiSI | CCGG | 1 cut(s) | 128 |
| BslFI | GGGAC | 2 cut(s) | 877, 1334 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1084, 1187 |
| BsmAI | GTCTC | 3 cut(s) | 56, 781, 856 |
| BsmFI | GGGAC | 2 cut(s) | 877, 1334 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 147, 193, 386, 941, 1216, 1463 |
| Bsp143I | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| BspACI | CCGC | 5 cut(s) | 21, 809, 1312, 1373, 1378 |
| BspCNI | CTCAG | 1 cut(s) | 161 |
| BspDI | ATCGAT | 1 cut(s) | 1468 |
| BspLI | GGNNCC | 6 cut(s) | 132, 488, 531, 552, 919, 1215 |
| BspMAI | CTGCAG | 1 cut(s) | 1068 |
| BspMI | ACCTGC | 2 cut(s) | 82, 1107 |
| BspPI | GGATC | 3 cut(s) | 682, 700, 1435 |
| BspQI | GCTCTTC | 1 cut(s) | 13 |
| BspT107I | GGYRCC | 5 cut(s) | 130, 486, 529, 550, 1213 |
| BspTI | CTTAAG | 2 cut(s) | 242, 1481 |
| BsrDI | GCAATG | 1 cut(s) | 966 |
| BsrI | ACTGG | 4 cut(s) | 110, 643, 773, 833 |
| BssECI | CCNNGG | 2 cut(s) | 616, 1209 |
| BssMI | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| BssNI | GRCGYC | 2 cut(s) | 131, 487 |
| BssSI | CACGAG | 1 cut(s) | 192 |
| Bst2BI | CACGAG | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 5 cut(s) | 159, 444, 617, 1079, 1210 |
| Bst4CI | ACNGT | 4 cut(s) | 463, 868, 983, 1417 |
| Bst6I | CTCTTC | 5 cut(s) | 13, 44, 63, 339, 617 |
| BstACI | GRCGYC | 2 cut(s) | 131, 487 |
| BstAFI | CTTAAG | 2 cut(s) | 242, 1481 |
| BstC8I | GCNNGC | 1 cut(s) | 1371 |
| BstDEI | CTNAG | 3 cut(s) | 148, 752, 1112 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1185 |
| BstF5I | GGATG | 5 cut(s) | 123, 355, 1045, 1202, 1294 |
| BstH2I | RGCGCY | 3 cut(s) | 134, 490, 969 |
| BstHHI | GCGC | 3 cut(s) | 133, 489, 968 |
| BstKTI | GATC | 6 cut(s) | 249, 421, 677, 695, 1430, 1468 |
| BstMAI | GTCTC | 3 cut(s) | 56, 781, 856 |
| BstMBI | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 815, 965, 1122, 1331, 1366 |
| BstNI | CCWGG | 5 cut(s) | 159, 444, 617, 1079, 1210 |
| BstNSI | RCATGY | 1 cut(s) | 1373 |
| BstSCI | CCNGG | 6 cut(s) | 126, 157, 442, 615, 1077, 1208 |
| BstSFI | CTRYAG | 2 cut(s) | 1064, 1437 |
| BstSLI | GKGCMC | 2 cut(s) | 193, 1216 |
| BstV1I | GCAGC | 3 cut(s) | 802, 1050, 1346 |
| BstX2I | RGATCY | 2 cut(s) | 674, 692 |
| BstYI | RGATCY | 2 cut(s) | 674, 692 |
| Bsu15I | ATCGAT | 1 cut(s) | 1468 |
| BsuTUI | ATCGAT | 1 cut(s) | 1468 |
| BtsCI | GGATG | 5 cut(s) | 123, 355, 1045, 1202, 1294 |
| BtsIMutI | CAGTG | 2 cut(s) | 344, 716 |
| BveI | ACCTGC | 2 cut(s) | 82, 1107 |
| Cac8I | GCNNGC | 1 cut(s) | 1371 |
| CfoI | GCGC | 3 cut(s) | 133, 489, 968 |
| Cfr13I | GGNCC | 1 cut(s) | 1375 |
| ClaI | ATCGAT | 1 cut(s) | 1468 |
| CpoI | CGGWCCG | 1 cut(s) | 1375 |
| CsiI | ACCWGGT | 1 cut(s) | 1077 |
| Csp6I | GTAC | 4 cut(s) | 113, 551, 826, 1231 |
| CspI | CGGWCCG | 1 cut(s) | 1375 |
| CviAII | CATG | 2 cut(s) | 391, 1370 |
| CviQI | GTAC | 4 cut(s) | 113, 551, 826, 1231 |
| DdeI | CTNAG | 3 cut(s) | 148, 752, 1112 |
| DinI | GGCGCC | 2 cut(s) | 132, 488 |
| DpnI | GATC | 6 cut(s) | 248, 420, 676, 694, 1429, 1467 |
| DpnII | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| DraIII | CACNNNGTG | 1 cut(s) | 1252 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1098, 1448 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1098, 1448 |
| Eam1104I | CTCTTC | 5 cut(s) | 13, 44, 63, 339, 617 |
| EarI | CTCTTC | 5 cut(s) | 13, 44, 63, 339, 617 |
| EciI | GGCGGA | 1 cut(s) | 10 |
| Ecl136II | GAGCTC | 2 cut(s) | 145, 384 |
| Eco24I | GRGCYC | 3 cut(s) | 8, 147, 386 |
| Eco47I | GGWCC | 1 cut(s) | 1375 |
| Eco53kI | GAGCTC | 2 cut(s) | 145, 384 |
| Eco57I | CTGAAG | 2 cut(s) | 350, 1365 |
| EcoICRI | GAGCTC | 2 cut(s) | 145, 384 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1185 |
| EcoRII | CCWGG | 5 cut(s) | 157, 442, 615, 1077, 1208 |
| EcoT22I | ATGCAT | 1 cut(s) | 768 |
| EcoT38I | GRGCYC | 3 cut(s) | 8, 147, 386 |
| EgeI | GGCGCC | 2 cut(s) | 132, 488 |
| EheI | GGCGCC | 2 cut(s) | 132, 488 |
| FaeI | CATG | 2 cut(s) | 394, 1373 |
| FaqI | GGGAC | 2 cut(s) | 877, 1334 |
| FatI | CATG | 2 cut(s) | 390, 1369 |
| FauI | CCCGC | 2 cut(s) | 802, 1319 |
| FblI | GTMKAC | 2 cut(s) | 257, 1090 |
| Fnu4HI | GCNGC | 3 cut(s) | 816, 1064, 1335 |
| FokI | GGATG | 5 cut(s) | 110, 362, 1052, 1189, 1301 |
| FriOI | GRGCYC | 3 cut(s) | 8, 147, 386 |
| Fsp4HI | GCNGC | 3 cut(s) | 816, 1064, 1335 |
| FspBI | CTAG | 4 cut(s) | 116, 791, 1122, 1322 |
| GlaI | GCGC | 3 cut(s) | 132, 488, 967 |
| GluI | GCNGC | 3 cut(s) | 816, 1064, 1335 |
| GsaI | CCCAGC | 1 cut(s) | 1047 |
| GsuI | CTGGAG | 1 cut(s) | 1192 |
| HaeII | RGCGCY | 3 cut(s) | 134, 490, 969 |
| HapII | CCGG | 1 cut(s) | 128 |
| HhaI | GCGC | 3 cut(s) | 133, 489, 968 |
| Hin1I | GRCGYC | 2 cut(s) | 131, 487 |
| Hin1II | CATG | 2 cut(s) | 394, 1373 |
| Hin6I | GCGC | 3 cut(s) | 131, 487, 966 |
| HinP1I | GCGC | 3 cut(s) | 131, 487, 966 |
| HinfI | GANTC | 6 cut(s) | 510, 1054, 1156, 1175, 1304, 1433 |
| HpaII | CCGG | 1 cut(s) | 128 |
| HphI | GGTGA | 2 cut(s) | 63, 445 |
| Hpy166II | GTNNAC | 5 cut(s) | 185, 239, 258, 1091, 1272 |
| Hpy188III | TCNNGA | 2 cut(s) | 1103, 1343 |
| Hpy8I | GTNNAC | 5 cut(s) | 185, 239, 258, 1091, 1272 |
| HpyAV | CCTTC | 5 cut(s) | 636, 1063, 1146, 1252, 1400 |
| HpyCH4III | ACNGT | 4 cut(s) | 463, 868, 983, 1417 |
| HpyCH4V | TGCA | 8 cut(s) | 233, 286, 766, 818, 934, 993, 1066, 1255 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 815, 965, 1122, 1331, 1366 |
| HpyF3I | CTNAG | 3 cut(s) | 148, 752, 1112 |
| Hsp92I | GRCGYC | 2 cut(s) | 131, 487 |
| Hsp92II | CATG | 2 cut(s) | 394, 1373 |
| HspAI | GCGC | 3 cut(s) | 131, 487, 966 |
| KasI | GGCGCC | 2 cut(s) | 130, 486 |
| KpnI | GGTACC | 1 cut(s) | 554 |
| Kzo9I | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| LguI | GCTCTTC | 1 cut(s) | 13 |
| LmnI | GCTCC | 6 cut(s) | 36, 381, 686, 812, 1392, 1458 |
| Lsp1109I | GCAGC | 3 cut(s) | 802, 1050, 1346 |
| LweI | GCATC | 4 cut(s) | 753, 1027, 1030, 1346 |
| MabI | ACCWGGT | 1 cut(s) | 1077 |
| MaeI | CTAG | 4 cut(s) | 116, 791, 1122, 1322 |
| MaeIII | GTNAC | 1 cut(s) | 451 |
| MalI | GATC | 6 cut(s) | 248, 420, 676, 694, 1429, 1467 |
| MboI | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| MboII | GAAGA | 7 cut(s) | 31, 50, 356, 356, 479, 482, 604 |
| MfeI | CAATTG | 1 cut(s) | 534 |
| MflI | RGATCY | 2 cut(s) | 674, 692 |
| MhlI | GDGCHC | 7 cut(s) | 8, 147, 193, 386, 941, 1216, 1463 |
| MluCI | AATT | 9 cut(s) | 294, 534, 727, 732, 742, 798, 887, 1106, 1354 |
| Mly113I | GGCGCC | 2 cut(s) | 131, 487 |
| MlyI | GAGTC | 3 cut(s) | 1063, 1165, 1169 |
| MmeI | TCCRAC | 4 cut(s) | 86, 856, 1017, 1121 |
| Mph1103I | ATGCAT | 1 cut(s) | 768 |
| MroXI | GAANNNNTTC | 1 cut(s) | 474 |
| MseI | TTAA | 4 cut(s) | 215, 243, 1185, 1482 |
| MspCI | CTTAAG | 2 cut(s) | 242, 1481 |
| MspI | CCGG | 1 cut(s) | 128 |
| MspR9I | CCNGG | 6 cut(s) | 128, 159, 444, 617, 1079, 1210 |
| MunI | CAATTG | 1 cut(s) | 534 |
| MvaI | CCWGG | 5 cut(s) | 159, 444, 617, 1079, 1210 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 815, 965, 1122, 1331, 1366 |
| NarI | GGCGCC | 2 cut(s) | 131, 487 |
| NciI | CCSGG | 1 cut(s) | 128 |
| NdeII | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| NlaIII | CATG | 2 cut(s) | 394, 1373 |
| NlaIV | GGNNCC | 6 cut(s) | 132, 488, 531, 552, 919, 1215 |
| NmuCI | GTSAC | 1 cut(s) | 451 |
| NsiI | ATGCAT | 1 cut(s) | 768 |
| NspI | RCATGY | 1 cut(s) | 1373 |
| PaeI | GCATGC | 1 cut(s) | 1373 |
| PaqCI | CACCTGC | 1 cut(s) | 82 |
| PciSI | GCTCTTC | 1 cut(s) | 13 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1449 |
| PdmI | GAANNNNTTC | 1 cut(s) | 474 |
| PfeI | GAWTC | 3 cut(s) | 510, 1304, 1433 |
| PflFI | GACNNNGTC | 1 cut(s) | 1095 |
| PkrI | GCNGC | 3 cut(s) | 817, 1065, 1336 |
| PleI | GAGTC | 3 cut(s) | 1062, 1164, 1169 |
| PluTI | GGCGCC | 2 cut(s) | 134, 490 |
| PpsI | GAGTC | 3 cut(s) | 1062, 1164, 1169 |
| PsiI | TTATAA | 1 cut(s) | 602 |
| Psp124BI | GAGCTC | 2 cut(s) | 147, 386 |
| Psp6I | CCWGG | 5 cut(s) | 157, 442, 615, 1077, 1208 |
| PspFI | CCCAGC | 1 cut(s) | 1043 |
| PspGI | CCWGG | 5 cut(s) | 157, 442, 615, 1077, 1208 |
| PspN4I | GGNNCC | 6 cut(s) | 132, 488, 531, 552, 919, 1215 |
| PspPI | GGNCC | 1 cut(s) | 1375 |
| PstI | CTGCAG | 1 cut(s) | 1068 |
| PsuI | RGATCY | 2 cut(s) | 674, 692 |
| PsyI | GACNNNGTC | 1 cut(s) | 1095 |
| RsaI | GTAC | 4 cut(s) | 114, 552, 827, 1232 |
| RsaNI | GTAC | 4 cut(s) | 113, 551, 826, 1231 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1375 |
| RsrII | CGGWCCG | 1 cut(s) | 1375 |
| SacI | GAGCTC | 2 cut(s) | 147, 386 |
| SapI | GCTCTTC | 1 cut(s) | 13 |
| SaqAI | TTAA | 4 cut(s) | 215, 243, 1185, 1482 |
| SatI | GCNGC | 3 cut(s) | 816, 1064, 1335 |
| Sau3AI | GATC | 6 cut(s) | 246, 418, 674, 692, 1427, 1465 |
| Sau96I | GGNCC | 1 cut(s) | 1375 |
| ScaI | AGTACT | 2 cut(s) | 114, 1232 |
| SchI | GAGTC | 3 cut(s) | 1063, 1165, 1169 |
| ScrFI | CCNGG | 6 cut(s) | 128, 159, 444, 617, 1079, 1210 |
| SduI | GDGCHC | 7 cut(s) | 8, 147, 193, 386, 941, 1216, 1463 |
| SexAI | ACCWGGT | 1 cut(s) | 1077 |
| SfaNI | GCATC | 4 cut(s) | 753, 1027, 1030, 1346 |
| SfcI | CTRYAG | 2 cut(s) | 1064, 1437 |
| SfoI | GGCGCC | 2 cut(s) | 132, 488 |
| SinI | GGWCC | 1 cut(s) | 1375 |
| SmlI | CTYRAG | 3 cut(s) | 242, 422, 1481 |
| SmoI | CTYRAG | 3 cut(s) | 242, 422, 1481 |
| SpeI | ACTAGT | 1 cut(s) | 790 |
| SphI | GCATGC | 1 cut(s) | 1373 |
| Sse9I | AATT | 9 cut(s) | 294, 534, 727, 732, 742, 798, 887, 1106, 1354 |
| SsiI | CCGC | 5 cut(s) | 21, 809, 1312, 1373, 1378 |
| SspDI | GGCGCC | 2 cut(s) | 130, 486 |
| SspMI | CTAG | 4 cut(s) | 116, 791, 1122, 1322 |
| SstI | GAGCTC | 2 cut(s) | 147, 386 |
| StyD4I | CCNGG | 6 cut(s) | 126, 157, 442, 615, 1077, 1208 |
| TaaI | ACNGT | 4 cut(s) | 463, 868, 983, 1417 |
| TaqI | TCGA | 4 cut(s) | 417, 945, 1365, 1468 |
| TasI | AATT | 9 cut(s) | 294, 534, 727, 732, 742, 798, 887, 1106, 1354 |
| TatI | WGTACW | 2 cut(s) | 112, 1230 |
| TfiI | GAWTC | 3 cut(s) | 510, 1304, 1433 |
| Tru1I | TTAA | 4 cut(s) | 215, 243, 1185, 1482 |
| Tru9I | TTAA | 4 cut(s) | 215, 243, 1185, 1482 |
| TscAI | CASTG | 2 cut(s) | 344, 723 |
| TseFI | GTSAC | 1 cut(s) | 451 |
| TseI | GCWGC | 3 cut(s) | 815, 1063, 1334 |
| Tsp45I | GTSAC | 1 cut(s) | 451 |
| TspDTI | ATGAA | 7 cut(s) | 299, 418, 420, 638, 695, 988, 1425 |
| TspRI | CASTG | 2 cut(s) | 344, 723 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1095 |
| Vha464I | CTTAAG | 2 cut(s) | 242, 1481 |
| VpaK11BI | GGWCC | 1 cut(s) | 1375 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1185 |
| XapI | RAATTY | 4 cut(s) | 294, 727, 742, 1106 |
| XceI | RCATGY | 1 cut(s) | 1373 |
| XmiI | GTMKAC | 2 cut(s) | 257, 1090 |
| XmnI | GAANNNNTTC | 1 cut(s) | 474 |
| XspI | CTAG | 4 cut(s) | 116, 791, 1122, 1322 |
| ZrmI | AGTACT | 2 cut(s) | 114, 1232 |
| Zsp2I | ATGCAT | 1 cut(s) | 768 |