Rh3CG360700

NEMP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004377
Physical Location & Seq
Reverse (-)
44774545 .. 44781321
6777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG360700.1

Sequence Viewer

Length: 1479 bp
ATGGCTACCCTTCCTTTCTTCGTTTTCTCTCTCTTTCTGTCGACCATCTCATTCTTATGTTCCACTACCCCTACCCCTACCGGGAAAGGTATTGATCTTGAAAATCCAGTACTAAAAGTCAACCCAGCACCGCTTTCTCTTTCTGGGCACTTGCCAACCGCTGGTTCTAAAGATGTTTTATTTTGTGAACGGGTTCGAGTTTCTGGTATACCTAGATCAAAAATTGGGAGTTATGCAAATTCCTTTCGGATTACTCTGTCTCCATCTGTCCTAATCCCGGAGAGGTTGCATAGCAAAATTGAGGTCTGTTTTCACCGTAATGATTCGCTTGGACTCTGTCAGTGTAGAAATGATGAGTGGAAAACTCTCGAGAAAGGGCTATGGGAATCTGTCATGGCCCCTTATGACGAGAAATATGTTGATGTCAAGTACATTGGCGATTTACTTGGGTCTTCCACCATCACTGTTGAAGAAGTTTCTCAGCAATGGCGCCTTTGGTTTCTAGCAGTGGGATTCATTTTACTGTTGCTGGCACCAAGCATCAGTAGTTGGGTTCATTTTTATTATAGCACTTCAATGGTTATAGGAGTTTTTATGGTCATTATATTCCTTCTCTTCCAGGGAATGAAATTGCTGCCATTTGGAAGAAAAAATTTCTTCTATCTTGTTACTGTATATGGGTCAGTGCTTGGAGCTGGATCTTATCTCTTTCATCACTTCTCTGTCATGGTAAATTCAATTCTTGTAAATTTTGGGATTAGTGAAGACATGCACAATCTGATCTCTAAATTTTTACTGGTGGCGATTATCCTTATGGGTGCTGCACTAGGTTACTGGATTGGGAGGAAGCTTTTCATCGCAAAGGATGGAACAGTAGATGTTGTTGTAGCCCAATTTGCTATGTGGGCAATCCGCTTTTTTGGAATCACCACTCTTGATACTCCTTTGGCTATTGGAGCGTTGGTTTCCTGCTTGGTTATCTGCAAACTTATCACTTTTGTGAAGTGGCATGGTAGAATGAATCAGTCAAATGGTGCGAGTGGGAGTCCTTTACAGCAGAAAGGAAGACACGTCACAGGAAGACACAGTCGTCCAGAGTTCCTTCGCAGGTCCAGCGCACTAGAGGCATGGAACAGTACAAGGGGTGCATCTGCTTGGTCTGATTCTCCTGTTAAAGGTGTTGTGTCGCCATCTTTTAGGACATGTGATCAACAGGAGTACTATTCAACCTTCCACAAGATGCGAAACCGAAAGAAGTTCACAAAGAAAGAGTGGGATGATTTTACAATGGAATCAACGCGGCATGCTCTAGCAGAATGGGCAGCATCTCCTGAATTCACCGATTGGGTTATCGAGCATGCCGACCGCATACAACTCCTTCCAAGCGATAGTTCAGATGAAACTGCAGGAAGTGAATCTGATTCTACTGATGAGAATGTCGTGGGGAGCACGGATAGGTGTGGTTTTCTCAAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NEMP

Protein Analysis

492

Amino Acids

55.15

Weight (kDa)

8.47

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEMP PF10225 154 - 411 1.6e-32 NEMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1089
Acc36I ACCTGC 1 cut(s) 1098
AccB1I GGYRCC 2 cut(s) 489, 532
AccB7I CCANNNNNTGG 1 cut(s) 161
AccI GTMKAC 2 cut(s) 41, 208
AccII CGCG 1 cut(s) 1300
AciI CCGC 5 cut(s) 131, 159, 913, 1300, 1366
AclWI GGATC 1 cut(s) 706
AcsI RAATTY 6 cut(s) 238, 652, 733, 748, 788, 1334
AcyI GRCGYC 1 cut(s) 490
AfaI GTAC 4 cut(s) 111, 431, 1138, 1220
AfiI CCNNNNNNNGG 4 cut(s) 81, 161, 277, 1175
AflIII ACRYGT 2 cut(s) 1069, 1202
AgsI TTSAA 5 cut(s) 101, 470, 576, 738, 1227
AjiI CACGTC 1 cut(s) 1072
AjnI CCWGG 1 cut(s) 618
AjuI GAANNNNNNNTTGG 4 cut(s) 148, 180, 1375, 1407
AleI CACNNNNGTG 1 cut(s) 998
AluBI AGCT 2 cut(s) 695, 850
AluI AGCT 2 cut(s) 695, 850
Alw21I GWGCWC 1 cut(s) 1451
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 706
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 3 cut(s) 634, 821, 1322
ApoI RAATTY 6 cut(s) 238, 652, 733, 748, 788, 1334
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
Asp700I GAANNNNTTC 2 cut(s) 192, 851
AspLEI GCGC 2 cut(s) 492, 1118
AspS9I GGNCC 2 cut(s) 397, 1110
AsuC2I CCSGG 2 cut(s) 82, 278
AsuHPI GGTGA 3 cut(s) 305, 919, 1330
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 1110
BaeGI GKGCMC 1 cut(s) 150
BanI GGYRCC 2 cut(s) 489, 532
BbsI GAAGAC 4 cut(s) 444, 771, 1072, 1087
Bbv12I GWGCWC 1 cut(s) 1451
BbvI GCAGC 3 cut(s) 621, 808, 1334
BccI CCATC 5 cut(s) 53, 271, 467, 860, 1198
BciT130I CCWGG 1 cut(s) 620
BclI TGATCA 1 cut(s) 1207
BcnI CCSGG 2 cut(s) 82, 278
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 5 cut(s) 213, 503, 827, 1121, 1310
BfmI CTRYAG 1 cut(s) 1404
BfoI RGCGCY 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 1098
BisI GCNGC 4 cut(s) 635, 822, 1301, 1323
BlsI GCNGC 4 cut(s) 636, 823, 1302, 1324
BmcAI AGTACT 2 cut(s) 111, 1220
Bme1390I CCNGG 3 cut(s) 82, 278, 620
Bme18I GGWCC 1 cut(s) 1110
BmeT110I CYCGRG 1 cut(s) 368
BmgBI CACGTC 1 cut(s) 1072
BmgT120I GGNCC 2 cut(s) 397, 1110
BmiI GGNNCC 3 cut(s) 399, 491, 534
BmrFI CCNGG 3 cut(s) 82, 278, 620
BmsI GCATC 4 cut(s) 549, 1157, 1230, 1334
BpiI GAAGAC 4 cut(s) 444, 771, 1072, 1087
BpuMI CCSGG 2 cut(s) 82, 278
BsaHI GRCGYC 1 cut(s) 490
BsaJI CCNNGG 1 cut(s) 619
BsaXI ACNNNNNCTCC 4 cut(s) 244, 274, 948, 978
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 161, 277, 1175
Bse1I ACTGG 3 cut(s) 107, 801, 839
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 2 cut(s) 871, 1282
BseLI CCNNNNNNNGG 4 cut(s) 81, 161, 277, 1175
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 3 cut(s) 107, 801, 839
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 3 cut(s) 621, 808, 1334
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 1 cut(s) 1300
Bsh1285I CGRYCG 1 cut(s) 1366
BshFI GGCC 1 cut(s) 398
BshNI GGYRCC 2 cut(s) 489, 532
BsiEI CGRYCG 1 cut(s) 1366
BsiHKAI GWGCWC 1 cut(s) 1451
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 81, 278
BslI CCNNNNNNNGG 4 cut(s) 81, 161, 277, 1175
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 150, 1451
Bsp143I GATC 5 cut(s) 94, 215, 698, 780, 1207
BspACI CCGC 5 cut(s) 131, 159, 913, 1300, 1366
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 493
BspFNI CGCG 1 cut(s) 1300
BspLI GGNNCC 3 cut(s) 399, 491, 534
BspMAI CTGCAG 1 cut(s) 1408
BspMI ACCTGC 1 cut(s) 1098
BspPI GGATC 1 cut(s) 706
BspT107I GGYRCC 2 cut(s) 489, 532
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 3 cut(s) 107, 801, 839
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 5 cut(s) 94, 215, 698, 780, 1207
BssNAI GTATAC 1 cut(s) 209
BssNI GRCGYC 1 cut(s) 490
Bst1107I GTATAC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 7 cut(s) 317, 466, 525, 673, 874, 1088, 1136
Bst6I CTCTTC 1 cut(s) 620
BstACI GRCGYC 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 531, 1305, 1359
BstDEI CTNAG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 1173
BstF5I GGATG 2 cut(s) 871, 1282
BstFNI CGCG 1 cut(s) 1300
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 2 cut(s) 492, 1118
BstKTI GATC 5 cut(s) 97, 218, 701, 783, 1210
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 5 cut(s) 94, 215, 698, 780, 1207
BstMCI CGRYCG 1 cut(s) 1366
BstMWI GCNNNNNNNGC 6 cut(s) 896, 905, 956, 1113, 1124, 1319
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 4 cut(s) 772, 1206, 1307, 1361
BstSCI CCNGG 3 cut(s) 80, 276, 618
BstSFI CTRYAG 1 cut(s) 1404
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 1 cut(s) 1300
BstV1I GCAGC 3 cut(s) 621, 808, 1334
BstV2I GAAGAC 4 cut(s) 444, 771, 1072, 1087
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BstZ17I GTATAC 1 cut(s) 209
BsuRI GGCC 1 cut(s) 398
BtgZI GCGATG 1 cut(s) 841
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 2 cut(s) 871, 1282
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 4 cut(s) 347, 462, 513, 690
BveI ACCTGC 1 cut(s) 1098
Cac8I GCNNGC 3 cut(s) 531, 1305, 1359
CfoI GCGC 2 cut(s) 492, 1118
Cfr13I GGNCC 2 cut(s) 397, 1110
Csp6I GTAC 4 cut(s) 110, 430, 1137, 1219
CviAII CATG 8 cut(s) 394, 727, 769, 1010, 1128, 1203, 1304, 1358
CviJI RGCY 7 cut(s) 5, 379, 398, 695, 850, 890, 950
CviKI_1 RGCY 7 cut(s) 5, 379, 398, 695, 850, 890, 950
CviQI GTAC 4 cut(s) 110, 430, 1137, 1219
DdeI CTNAG 1 cut(s) 480
DinI GGCGCC 1 cut(s) 491
DpnI GATC 5 cut(s) 96, 217, 700, 782, 1209
DpnII GATC 5 cut(s) 94, 215, 698, 780, 1207
DrdI GACNNNNNNGTC 1 cut(s) 1089
DseDI GACNNNNNNGTC 1 cut(s) 1089
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 1173
EcoRI GAATTC 1 cut(s) 1334
EcoRII CCWGG 1 cut(s) 618
EgeI GGCGCC 1 cut(s) 491
EheI GGCGCC 1 cut(s) 491
FaeI CATG 8 cut(s) 397, 730, 772, 1013, 1131, 1206, 1307, 1361
FatI CATG 8 cut(s) 393, 726, 768, 1009, 1127, 1202, 1303, 1357
FbaI TGATCA 1 cut(s) 1207
FblI GTMKAC 2 cut(s) 41, 208
Fnu4HI GCNGC 4 cut(s) 635, 822, 1301, 1323
FokI GGATG 2 cut(s) 878, 1289
Fsp4HI GCNGC 4 cut(s) 635, 822, 1301, 1323
FspBI CTAG 5 cut(s) 213, 503, 827, 1121, 1310
GlaI GCGC 2 cut(s) 491, 1117
GluI GCNGC 4 cut(s) 635, 822, 1301, 1323
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 1 cut(s) 398
HapII CCGG 2 cut(s) 81, 278
HhaI GCGC 2 cut(s) 492, 1118
Hin1I GRCGYC 1 cut(s) 490
Hin1II CATG 8 cut(s) 397, 730, 772, 1013, 1131, 1206, 1307, 1361
Hin6I GCGC 2 cut(s) 490, 1116
HinP1I GCGC 2 cut(s) 490, 1116
HincII GTYRAC 2 cut(s) 42, 121
HindII GTYRAC 2 cut(s) 42, 121
HindIII AAGCTT 1 cut(s) 848
HpaII CCGG 2 cut(s) 81, 278
HphI GGTGA 3 cut(s) 305, 919, 1330
Hpy166II GTNNAC 5 cut(s) 42, 121, 188, 209, 1260
Hpy188I TCNGA 5 cut(s) 249, 780, 1162, 1396, 1420
Hpy188III TCNNGA 6 cut(s) 98, 368, 370, 935, 1094, 1331
Hpy8I GTNNAC 5 cut(s) 42, 121, 188, 209, 1260
HpyAV CCTTC 5 cut(s) 20, 620, 1112, 1240, 1388
HpyCH4III ACNGT 7 cut(s) 317, 466, 525, 673, 874, 1088, 1136
HpyCH4IV ACGT 1 cut(s) 1071
HpyCH4V TGCA 7 cut(s) 236, 289, 772, 824, 984, 1148, 1406
HpyF10VI GCNNNNNNNGC 6 cut(s) 896, 905, 956, 1113, 1124, 1319
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 1071
Hsp92I GRCGYC 1 cut(s) 490
Hsp92II CATG 8 cut(s) 397, 730, 772, 1013, 1131, 1206, 1307, 1361
HspAI GCGC 2 cut(s) 490, 1116
KasI GGCGCC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 1207
Kzo9I GATC 5 cut(s) 94, 215, 698, 780, 1207
LmnI GCTCC 3 cut(s) 692, 956, 1446
Lsp1109I GCAGC 3 cut(s) 621, 808, 1334
LweI GCATC 4 cut(s) 549, 1157, 1230, 1334
MaeI CTAG 5 cut(s) 213, 503, 827, 1121, 1310
MaeII ACGT 1 cut(s) 1071
MaeIII GTNAC 3 cut(s) 667, 830, 1072
MalI GATC 5 cut(s) 96, 217, 700, 782, 1209
MboI GATC 5 cut(s) 94, 215, 698, 780, 1207
MboII GAAGA 9 cut(s) 10, 444, 482, 607, 649, 657, 776, 1077, 1092
MflI RGATCY 1 cut(s) 698
MhlI GDGCHC 2 cut(s) 150, 1451
Mly113I GGCGCC 1 cut(s) 490
MlyI GAGTC 2 cut(s) 327, 1054
MnlI CCTC 4 cut(s) 276, 295, 837, 1117
MroXI GAANNNNTTC 2 cut(s) 192, 851
MseI TTAA 1 cut(s) 1173
MslI CAYNNNNRTG 4 cut(s) 55, 318, 575, 998
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 2 cut(s) 81, 278
MspR9I CCNGG 3 cut(s) 82, 278, 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 1 cut(s) 1300
MwoI GCNNNNNNNGC 6 cut(s) 896, 905, 956, 1113, 1124, 1319
NarI GGCGCC 1 cut(s) 490
NciI CCSGG 2 cut(s) 82, 278
NdeII GATC 5 cut(s) 94, 215, 698, 780, 1207
NlaIII CATG 8 cut(s) 397, 730, 772, 1013, 1131, 1206, 1307, 1361
NlaIV GGNNCC 3 cut(s) 399, 491, 534
NmuCI GTSAC 1 cut(s) 1072
NspI RCATGY 4 cut(s) 772, 1206, 1307, 1361
OliI CACNNNNGTG 1 cut(s) 998
PaeI GCATGC 2 cut(s) 1307, 1361
PaeR7I CTCGAG 1 cut(s) 368
PciI ACATGT 1 cut(s) 1202
PcsI WCGNNNNNNNCGW 1 cut(s) 1359
PdmI GAANNNNTTC 2 cut(s) 192, 851
PfeI GAWTC 9 cut(s) 323, 386, 513, 924, 1021, 1163, 1292, 1415, 1421
PflFI GACNNNGTC 2 cut(s) 336, 1086
PflMI CCANNNNNTGG 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 4 cut(s) 636, 823, 1302, 1324
PleI GAGTC 2 cut(s) 327, 1053
PluTI GGCGCC 1 cut(s) 493
PpsI GAGTC 2 cut(s) 327, 1053
PscI ACATGT 1 cut(s) 1202
Psp6I CCWGG 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 399, 491, 534
PspPI GGNCC 2 cut(s) 397, 1110
PstI CTGCAG 1 cut(s) 1408
PsuI RGATCY 1 cut(s) 698
PsyI GACNNNGTC 2 cut(s) 336, 1086
RsaI GTAC 4 cut(s) 111, 431, 1138, 1220
RsaNI GTAC 4 cut(s) 110, 430, 1137, 1219
RseI CAYNNNNRTG 4 cut(s) 55, 318, 575, 998
SalI GTCGAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 1173
SatI GCNGC 4 cut(s) 635, 822, 1301, 1323
Sau3AI GATC 5 cut(s) 94, 215, 698, 780, 1207
Sau96I GGNCC 2 cut(s) 397, 1110
ScaI AGTACT 2 cut(s) 111, 1220
SchI GAGTC 2 cut(s) 327, 1054
ScrFI CCNGG 3 cut(s) 82, 278, 620
SduI GDGCHC 2 cut(s) 150, 1451
SfaNI GCATC 4 cut(s) 549, 1157, 1230, 1334
SfcI CTRYAG 1 cut(s) 1404
SfoI GGCGCC 1 cut(s) 491
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 1110
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 4 cut(s) 55, 318, 575, 998
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SphI GCATGC 2 cut(s) 1307, 1361
SsiI CCGC 5 cut(s) 131, 159, 913, 1300, 1366
SspDI GGCGCC 1 cut(s) 489
SspMI CTAG 5 cut(s) 213, 503, 827, 1121, 1310
StyD4I CCNGG 3 cut(s) 80, 276, 618
TaaI ACNGT 7 cut(s) 317, 466, 525, 673, 874, 1088, 1136
TaiI ACGT 1 cut(s) 1074
TaqI TCGA 4 cut(s) 41, 196, 369, 1353
TatI WGTACW 4 cut(s) 109, 429, 1136, 1218
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 9 cut(s) 323, 386, 513, 924, 1021, 1163, 1292, 1415, 1421
Tru1I TTAA 1 cut(s) 1173
Tru9I TTAA 1 cut(s) 1173
TscAI CASTG 4 cut(s) 347, 469, 513, 690
TseFI GTSAC 1 cut(s) 1072
TseI GCWGC 3 cut(s) 634, 821, 1322
Tsp45I GTSAC 1 cut(s) 1072
TspDTI ATGAA 7 cut(s) 505, 545, 641, 701, 844, 1034, 1413
TspGWI ACGGA 1 cut(s) 1466
TspRI CASTG 4 cut(s) 347, 469, 513, 690
Tth111I GACNNNGTC 2 cut(s) 336, 1086
Van91I CCANNNNNTGG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 1110
XagI CCTNNNNNAGG 1 cut(s) 1173
XapI RAATTY 6 cut(s) 238, 652, 733, 748, 788, 1334
XceI RCATGY 4 cut(s) 772, 1206, 1307, 1361
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 2 cut(s) 41, 208
XmnI GAANNNNTTC 2 cut(s) 192, 851
XspI CTAG 5 cut(s) 213, 503, 827, 1121, 1310
ZrmI AGTACT 2 cut(s) 111, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.