Rh6AG095200

NEMP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004377
Physical Location & Seq
Forward (+)
14043733 .. 14052038
8306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG095200.1

Sequence Viewer

Length: 528 bp
ATGGAGTTGAGTTCCAATGTTTATGATATTTGTTCTCTGTGGATCACTAATCTGTACACTTGTTCAGCTCCTAAATATATTTTGAGACCTTTCAGAGTCTTTGATGCTTTTGTTGCTACTTTGTGGGATTTCAATATAACATGGCAATATGAAATTACAGGTATTGATCTTGAAAATCAAGTACTAAATGTCAACCCAGCACCGCTTTCTCTTTTTGGGCACTCGCCTACCGCTGGTTCTAAAGATGTATTATTTTGTGAACGGGTTCGAGTTTCTGGTGTACCTAGATCAAAAATTGGGAGTTATGCAAATTCCTTTCGGATTACTCTGTCTCCATCTGTCTTAATCCCAGAGAGGTTGCATAGCAAAATTGAGTGTAGAAATGATGAGTGGAAAACTCTCGAGAAAGGGCTATGGGAATCTGTCATGTCCCCTTATGAGGAGAAATATGTTGATGTCAAGTACATTGGCGATTTACTTGGGTCTTCCACCATCACTGTTGAAGAAGGTCTTTCAAAAATAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NEMP

Protein Analysis

175

Amino Acids

19.91

Weight (kDa)

5.45

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 231
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 4 cut(s) 56, 183, 282, 464
AfiI CCNNNNNNNGG 2 cut(s) 233, 439
AgsI TTSAA 4 cut(s) 133, 173, 503, 516
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 79, 336
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 401
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 477
BccI CCATC 2 cut(s) 343, 500
BcoDI GTCTC 2 cut(s) 79, 336
BfaI CTAG 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 401
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 439
BseLI CCNNNNNNNGG 2 cut(s) 233, 439
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 233, 439
BsmAI GTCTC 2 cut(s) 79, 336
BsmFI GGGAC 1 cut(s) 415
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 3 cut(s) 42, 166, 287
BspACI CCGC 2 cut(s) 203, 231
BspPI GGATC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 54
BssMI GATC 3 cut(s) 42, 166, 287
Bst4CI ACNGT 1 cut(s) 499
BstAUI TGTACA 1 cut(s) 54
BstKTI GATC 3 cut(s) 45, 169, 290
BstMAI GTCTC 2 cut(s) 79, 336
BstMBI GATC 3 cut(s) 42, 166, 287
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 495
Csp6I GTAC 4 cut(s) 55, 182, 281, 463
CviAII CATG 2 cut(s) 141, 427
CviJI RGCY 2 cut(s) 68, 412
CviKI_1 RGCY 2 cut(s) 68, 412
CviQI GTAC 4 cut(s) 55, 182, 281, 463
DpnI GATC 3 cut(s) 44, 168, 289
DpnII GATC 3 cut(s) 42, 166, 287
Eco31I GGTCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 401
FaeI CATG 2 cut(s) 144, 430
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 415
FatI CATG 2 cut(s) 140, 426
FspBI CTAG 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 144, 430
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 96, 419
Hpy166II GTNNAC 4 cut(s) 57, 193, 260, 281
Hpy188I TCNGA 2 cut(s) 95, 321
Hpy188III TCNNGA 3 cut(s) 170, 401, 403
Hpy8I GTNNAC 4 cut(s) 57, 193, 260, 281
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4V TGCA 2 cut(s) 308, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 144, 430
Kzo9I GATC 3 cut(s) 42, 166, 287
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 144, 210, 219, 261, 363
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 285
MalI GATC 3 cut(s) 44, 168, 289
MboI GATC 3 cut(s) 42, 166, 287
MboII GAAGA 2 cut(s) 477, 515
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 4 cut(s) 153, 294, 310, 369
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 2 cut(s) 348, 433
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 42, 166, 287
NlaIII CATG 2 cut(s) 144, 430
PaeR7I CTCGAG 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 419
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 196
RsaI GTAC 4 cut(s) 56, 183, 282, 464
RsaNI GTAC 4 cut(s) 55, 182, 281, 463
SaqAI TTAA 1 cut(s) 344
Sau3AI GATC 3 cut(s) 42, 166, 287
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 70, 91, 163, 286, 359, 511
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 401
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 153, 294, 310, 369
SsiI CCGC 2 cut(s) 203, 231
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 499
TaqI TCGA 2 cut(s) 268, 402
TasI AATT 4 cut(s) 153, 294, 310, 369
TatI WGTACW 3 cut(s) 54, 181, 462
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 1 cut(s) 502
XapI RAATTY 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.