Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004377

Physical Location & Seq

Genomic Coordinates Reverse (-)

39195637 .. 39211443

Gene Structure 15807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG289100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCAAAATTGGGCTACAGACCACGGTAACGGCGGCACGAAGGCTGAGAGTGGTCAGAAAACAACGTCATCCAGCACCTCAGCAAACGCACCGCCCAACTCTGAAGCACTTCCTTCACATAAGCTCGAAATCGTTGTCGTCGTCATCCTCCGACGCCTTGCTCAGCTTGCCTCTGCGATTGCGAGTATTGATCTTAAAAATCCAGTACTACATGTCAACCCAGCACCGCTTTCTCTTTCTGGGCACTTGCCTACCGCTGGTTCTAAAGATGTTTTATTTTGTGAACGGGTTCAAGTTTCTGGTGTACCTAGATCAAAAATTGGGAGTTATGCAAATTCCTTTCGGATTACTCTGTCTCCATCTGTCTTAATCCCAGAGAGGTTGCATAGCAAAATTGAGGTCTGTTTTCACCGTAATGATTCGCTTGGACTCTGTCAGTGTAGAAATGATGAGTGGAAAACTCTCGAGAAAGGGCTATGGGAATCTGTCATGTCCCCATATGAGGGGAAATATGTTGATGTCAAGTACATTGGCGATTTACTTGGGTCTTCCACCATCACTGTTGAAGAAGGCTGTCGAGTTGCCAATCTTCTTGCAAGTAAAAGCACCTGCCCAAGCAAGGCAAATGGTTCTCAGCTAAAGCCAAAGGTAGCTGGTGTTGATTGGAATTTTAACAGTTGGGGAGGTACGCTTTATAGTTATGCAAAGCTGATGTATGTATTGAAGTTGTACAGTTTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

247

Amino Acids

26.83

Weight (kDa)

8.97

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28760
fragaria_vesca	FvH4_1g28540 FvH4_1g28540 FvH4_1g28540
malus_domestica	MD09G1231100.v1.1 MD12G1009700.v1.1 MD12G1009900.v1.1 MD14G1007100.v1.1
prunus_persica	Prupe.7G011900_v2.0.a1
pyrus_communis	pycom09g15000 pycom12g00750 pycom14g00560
rosa_chinensis	RchiOBHm_Chr3g0496221 RchiOBHm_Chr7g0220041
rosa_laevigata	RLG00000022546
rosa_multiflora	Rmu_sc0004080.1_g000008 Rmu_sc0012042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132890 Rroxscaffold_6G00389440
rosa_rugosa	Rorug03G0280700
rosa_samantha	Rh2BG396500 Rh3AG327700 Rh3BG363700 Rh3CG360700 Rh3DG363800 Rh4AG043100 Rh5AG246200 Rh5AG289100 Rh6AG095200 Rh6CG082300 Rh6DG078000
rosa_wichuraiana	Rw3G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	617
AciI	CCGC	4 cut(s)	33, 92, 227, 255
AcsI	RAATTY	2 cut(s)	334, 667
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	5 cut(s)	207, 306, 527, 688, 731
AfiI	CCNNNNNNNGG	4 cut(s)	257, 502, 503, 619
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	293, 566, 724
AluBI	AGCT	5 cut(s)	124, 166, 637, 653, 709
AluI	AGCT	5 cut(s)	124, 166, 637, 653, 709
Alw26I	GTCTC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	464
ApoI	RAATTY	2 cut(s)	334, 667
ArsI	GACNNNNNNTTYG	4 cut(s)	120, 152, 384, 416
Asp700I	GAANNNNTTC	2 cut(s)	108, 288
AsuHPI	GGTGA	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	367, 563
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	2 cut(s)	15, 740
BfuAI	ACCTGC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	34
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	4 cut(s)	257, 502, 503, 619
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	68, 144
BseLI	CCNNNNNNNGG	4 cut(s)	257, 502, 503, 619
BseMII	CTCAG	4 cut(s)	36, 93, 176, 647
BseNI	ACTGG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	4 cut(s)	257, 502, 503, 619
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	2 cut(s)	190, 311
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	4 cut(s)	33, 92, 227, 255
BspCNI	CTCAG	4 cut(s)	37, 92, 175, 646
BspMI	ACCTGC	1 cut(s)	617
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	190, 311
BssNI	GRCGYC	1 cut(s)	154
Bst4CI	ACNGT	5 cut(s)	26, 413, 562, 677, 734
BstACI	GRCGYC	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	45, 79, 162, 633
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	68, 144
BstKTI	GATC	2 cut(s)	193, 314
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	190, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	2 cut(s)	15, 740
BstSLI	GKGCMC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	68, 144
BtsIMutI	CAGTG	2 cut(s)	443, 558
BveI	ACCTGC	1 cut(s)	617
Cac8I	GCNNGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	5 cut(s)	206, 305, 526, 687, 730
CviAII	CATG	2 cut(s)	212, 490
CviQI	GTAC	5 cut(s)	206, 305, 526, 687, 730
DdeI	CTNAG	4 cut(s)	45, 79, 162, 633
DpnI	GATC	2 cut(s)	192, 313
DpnII	GATC	2 cut(s)	190, 311
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	464
FaeI	CATG	2 cut(s)	215, 493
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	211, 489
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	55, 131
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	34
GsaI	CCCAGC	1 cut(s)	224
HgaI	GACGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	215, 493
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	419, 429, 482
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	3 cut(s)	217, 284, 305
Hpy188I	TCNGA	4 cut(s)	57, 103, 152, 345
Hpy188III	TCNNGA	2 cut(s)	464, 466
Hpy8I	GTNNAC	3 cut(s)	217, 284, 305
Hpy99I	CGWCG	2 cut(s)	143, 156
HpyAV	CCTTC	3 cut(s)	34, 123, 563
HpyCH4III	ACNGT	5 cut(s)	26, 413, 562, 677, 734
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	5 cut(s)	4, 332, 385, 596, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	4 cut(s)	45, 79, 162, 633
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	215, 493
Kzo9I	GATC	2 cut(s)	190, 311
LpnPI	CCDG	9 cut(s)	85, 216, 225, 234, 243, 285, 387, 622, 639
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	192, 313
MboI	GATC	2 cut(s)	190, 311
MboII	GAAGA	3 cut(s)	540, 578, 581
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	5 cut(s)	7, 318, 334, 393, 667
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	7 cut(s)	88, 158, 181, 372, 391, 496, 677
MroXI	GAANNNNTTC	2 cut(s)	108, 288
MseI	TTAA	3 cut(s)	195, 368, 672
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	2 cut(s)	190, 311
NlaIII	CATG	2 cut(s)	215, 493
NspI	RCATGY	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	617
PciI	ACATGT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	2 cut(s)	108, 288
PfeI	GAWTC	2 cut(s)	419, 482
PflFI	GACNNNGTC	1 cut(s)	432
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PscI	ACATGT	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	432
RsaI	GTAC	5 cut(s)	207, 306, 527, 688, 731
RsaNI	GTAC	5 cut(s)	206, 305, 526, 687, 730
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	195, 368, 672
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	190, 311
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	2 cut(s)	15, 740
Sfr274I	CTCGAG	1 cut(s)	464
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	7, 318, 334, 393, 667
SsiI	CCGC	4 cut(s)	33, 92, 227, 255
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	5 cut(s)	26, 413, 562, 677, 734
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	126, 465, 577
TasI	AATT	5 cut(s)	7, 318, 334, 393, 667
TatI	WGTACW	3 cut(s)	205, 525, 729
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	419, 482
Tru1I	TTAA	3 cut(s)	195, 368, 672
Tru9I	TTAA	3 cut(s)	195, 368, 672
TscAI	CASTG	2 cut(s)	443, 565
TspRI	CASTG	2 cut(s)	443, 565
Tth111I	GACNNNGTC	1 cut(s)	432
XapI	RAATTY	2 cut(s)	334, 667
XceI	RCATGY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	464
XmnI	GAANNNNTTC	2 cut(s)	108, 288
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.