RchiOBHm_Chr7g0220041

NEMP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004377
Physical Location & Seq
Reverse (-)
38836587 .. 38836992
406 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19696

Sequence Viewer

Length: 234 bp
ATGTCCCCTTATGAGGAGAAATATGTTGATGTCAAGTACATTGGCGATTTAATTGGGTCTTCCACCATCACTGTTGAAGAAGTTTCTCAGCAATGGCGCCTTTGGTTTCTAGCAGTGGGATTCATTTTACTATTGCTGGCACTAAGCATCAGTAGTTGGGTTCATTTTTATTATAGCACTTCAATGGTTATAGTAGTTTTTATGGTCATTATATTCCTTCTCATCCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NEMP

Protein Analysis

77

Amino Acids

8.95

Weight (kDa)

4.64

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NEMP PF10225 22 - 77 7.8e-11 NEMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 2 cut(s) 77, 183
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
AspLEI GCGC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 51
BccI CCATC 1 cut(s) 74
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 98
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 98
BssNI GRCGYC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 87, 143
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 69, 120
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 37
CviJI RGCY 1 cut(s) 229
CviKI_1 RGCY 1 cut(s) 229
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 87, 143
DinI GGCGCC 1 cut(s) 98
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaiI YATR 6 cut(s) 12, 24, 174, 191, 203, 212
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 100
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 97
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 87, 143
Hsp92I GRCGYC 1 cut(s) 97
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
LpnPI CCDG 1 cut(s) 122
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 110
MboII GAAGA 2 cut(s) 51, 89
MluCI AATT 1 cut(s) 51
Mly113I GGCGCC 1 cut(s) 97
MnlI CCTC 1 cut(s) 7
MseI TTAA 2 cut(s) 50, 232
MslI CAYNNNNRTG 1 cut(s) 182
NarI GGCGCC 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 120
PluTI GGCGCC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 50, 232
SetI ASST 1 cut(s) 231
SfaNI GCATC 1 cut(s) 156
SfoI GGCGCC 1 cut(s) 98
SgeI CNNG 3 cut(s) 46, 122, 149
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 51
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 73
TasI AATT 1 cut(s) 51
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 2 cut(s) 50, 232
Tru9I TTAA 2 cut(s) 50, 232
TscAI CASTG 2 cut(s) 76, 120
TspDTI ATGAA 2 cut(s) 112, 152
TspRI CASTG 2 cut(s) 76, 120
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.