Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004377

Physical Location & Seq

Genomic Coordinates Forward (+)

665431 .. 669007

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGCTCTTCTCTCTCCTCTGCCATTCTCCTTCTTCTCTTTGCTTTCTGTCTCTCTCTTCCGACCCTCTCACCTGCCACCGAACTCAAAGGTGTTGATATTGAAAACCCAGTATTAGAAGTCATCCCGGCACCTCTTTCTGAGCACTCAGCTGTGCCTGGTTCTAAAGATGTTTTATTTTGCGTACGGGCACGAGTTTCTGGTATATCCAGGTTAAAACTTGGGAGTTATGCAAGTTCACTTAAGATCACCTTGTCTGCATCTCTAGGAATCCTGGAGAGGTTGCTTAGCAAAATTCAAGTCTGTTTTCATAGGAATAATACGCTTGGATTATGTCAGTGCGAAGAGGATGATTGGAAAAATATTCAGAAAGGGTTATGGAGCTCTGTCATATCGCCTTATGGTGAAAGATATGTCGATGTCAAGTTCATTGGCAAAATACCTGGCCCTGTCACCATAACTGTTGAAGAAGATTTTCAGAGATCTCGCCTTTTGTGTCTGGCACTGGGATTTACTTTACTGTTGTTGGCACCAATTGTCAGCAATTGGGTACCTTTTTATTATAGTAGTTCAATGGTTATAGGAGTTTTTCTGGTCATTATAATCATTCTCTTCCAGGGAATGAAGCTGTTGCTAACTGAGGGGAAAAATGTCCTCTATCTTACCATATGTGGATCAGTGCTTGGAGCAGGATCTTTCCTTGTTCATGAGTTTTCACTGATGGTAAATTCAATTCTTTTGAGTTTTGACCCTTTTGGACTAAGTGAGGAGATTCATAACCCAGTCTCTATATTTTTACTAGTGGGAATTATCCTCCCGGGAGCTGCATTAGGGTACTGGATTGTGAGGAAGTTTGTTGTCTCAAAAGATGGGACAGTAGATGTTGGTATAGCACAATTTGTCAAGTGGGCTATGCGTATCATTGGAACAACCTCAATCTTGCAGAGCACTCTCGATACTCCTTTAGCAATGGGCGCTTTGGATTCTTACTCGATCATCAACAAGTTGATTACTTGTCTGAAATGGCATCTCAAATCCAAATTGCAGCAGAAAAGCTGGAAGACAAGCAACAGACAAGCTTCAGAAATGAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NEMP

Protein Analysis

366

Amino Acids

40.07

Weight (kDa)

8.82

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28760
fragaria_vesca	FvH4_1g28540 FvH4_1g28540 FvH4_1g28540
malus_domestica	MD09G1231100.v1.1 MD12G1009700.v1.1 MD12G1009900.v1.1 MD14G1007100.v1.1
prunus_persica	Prupe.7G011900_v2.0.a1
pyrus_communis	pycom09g15000 pycom12g00750 pycom14g00560
rosa_chinensis	RchiOBHm_Chr3g0496221 RchiOBHm_Chr7g0220041
rosa_laevigata	RLG00000022546
rosa_multiflora	Rmu_sc0004080.1_g000008 Rmu_sc0012042.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132890 Rroxscaffold_6G00389440
rosa_rugosa	Rorug03G0280700
rosa_samantha	Rh2BG396500 Rh3AG327700 Rh3BG363700 Rh3CG360700 Rh3DG363800 Rh4AG043100 Rh5AG246200 Rh5AG289100 Rh6AG095200 Rh6CG082300 Rh6DG078000
rosa_wichuraiana	Rw3G028700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
Acc65I	GGTACC	1 cut(s)	550
AccB1I	GGYRCC	3 cut(s)	130, 529, 550
AclWI	GGATC	2 cut(s)	682, 700
AcsI	RAATTY	2 cut(s)	294, 727
AcuI	CTGAAG	1 cut(s)	1065
AfaI	GTAC	3 cut(s)	186, 552, 836
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	5 cut(s)	104, 299, 467, 573, 732
AhlI	ACTAGT	1 cut(s)	799
AjnI	CCWGG	5 cut(s)	157, 209, 273, 442, 615
AluBI	AGCT	6 cut(s)	152, 384, 628, 824, 1056, 1079
AluI	AGCT	6 cut(s)	152, 384, 628, 824, 1056, 1079
Alw21I	GWGCWC	3 cut(s)	147, 386, 950
Alw26I	GTCTC	3 cut(s)	56, 790, 865
AlwI	GGATC	2 cut(s)	682, 700
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	824, 1045
ApoI	RAATTY	2 cut(s)	294, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
Asp700I	GAANNNNTTC	1 cut(s)	474
Asp718I	GGTACC	1 cut(s)	550
AspLEI	GCGC	1 cut(s)	977
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	3 cut(s)	128, 818, 819
AsuHPI	GGTGA	4 cut(s)	63, 241, 416, 445
AvaI	CYCGRG	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	3 cut(s)	130, 529, 550
BanII	GRGCYC	2 cut(s)	8, 386
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	3 cut(s)	147, 386, 950
BbvI	GCAGC	2 cut(s)	811, 1057
BccI	CCATC	2 cut(s)	715, 863
BciT130I	CCWGG	5 cut(s)	159, 211, 275, 444, 617
BcnI	CCSGG	3 cut(s)	128, 818, 819
BcoDI	GTCTC	3 cut(s)	56, 790, 865
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	2 cut(s)	266, 800
BfoI	RGCGCY	1 cut(s)	978
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	482
BisI	GCNGC	2 cut(s)	825, 1046
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	2 cut(s)	826, 1047
Bme1390I	CCNGG	8 cut(s)	128, 159, 211, 275, 444, 617, 818, 819
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	3 cut(s)	132, 531, 552
BmrFI	CCNGG	8 cut(s)	128, 159, 211, 275, 444, 617, 818, 819
BmrI	ACTGGG	3 cut(s)	104, 515, 776
BmsI	GCATC	2 cut(s)	269, 1036
BmuI	ACTGGG	3 cut(s)	104, 515, 776
BpiI	GAAGAC	1 cut(s)	1067
BpmI	CTGGAG	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuMI	CCSGG	3 cut(s)	128, 818, 819
BsaJI	CCNNGG	2 cut(s)	616, 817
Bse1I	ACTGG	4 cut(s)	110, 510, 782, 842
Bse3DI	GCAATG	1 cut(s)	975
BseBI	CCWGG	5 cut(s)	159, 211, 275, 444, 617
BseDI	CCNNGG	2 cut(s)	616, 817
BseGI	GGATG	2 cut(s)	123, 355
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	3 cut(s)	132, 162, 630
BseNI	ACTGG	4 cut(s)	110, 510, 782, 842
BseRI	GAGGAG	2 cut(s)	7, 782
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	811, 1057
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	3 cut(s)	130, 529, 550
BsiHKAI	GWGCWC	3 cut(s)	147, 386, 950
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	2 cut(s)	128, 818
BsiWI	CGTACG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	886
BsmAI	GTCTC	3 cut(s)	56, 790, 865
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	5 cut(s)	8, 147, 193, 386, 950
Bsp143I	GATC	5 cut(s)	246, 482, 674, 692, 993
Bsp1720I	GCTNAGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	133, 161, 631
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	132, 531, 552
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	682, 700
BspQI	GCTCTTC	1 cut(s)	13
BspT107I	GGYRCC	3 cut(s)	130, 529, 550
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	4 cut(s)	110, 510, 782, 842
BssECI	CCNNGG	2 cut(s)	616, 817
BssMI	GATC	5 cut(s)	246, 482, 674, 692, 993
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	5 cut(s)	159, 211, 275, 444, 617
Bst4CI	ACNGT	3 cut(s)	463, 522, 877
Bst6I	CTCTTC	4 cut(s)	13, 63, 339, 617
BstAFI	CTTAAG	1 cut(s)	242
BstDEI	CTNAG	5 cut(s)	141, 148, 287, 639, 761
BstF5I	GGATG	2 cut(s)	123, 355
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	1 cut(s)	977
BstKTI	GATC	5 cut(s)	249, 485, 677, 695, 996
BstMAI	GTCTC	3 cut(s)	56, 790, 865
BstMBI	GATC	5 cut(s)	246, 482, 674, 692, 993
BstMWI	GCNNNNNNNGC	1 cut(s)	974
BstNI	CCWGG	5 cut(s)	159, 211, 275, 444, 617
BstSCI	CCNGG	8 cut(s)	126, 157, 209, 273, 442, 615, 816, 817
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	811, 1057
BstV2I	GAAGAC	1 cut(s)	1067
BstX2I	RGATCY	2 cut(s)	482, 692
BstYI	RGATCY	2 cut(s)	482, 692
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	123, 355
BtsIMutI	CAGTG	4 cut(s)	344, 503, 684, 716
BveI	ACCTGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	977
Cfr13I	GGNCC	1 cut(s)	446
Cfr9I	CCCGGG	1 cut(s)	817
Csp6I	GTAC	3 cut(s)	185, 551, 835
CviAII	CATG	1 cut(s)	707
CviJI	RGCY	9 cut(s)	6, 152, 384, 447, 628, 824, 911, 1056, 1079
CviKI_1	RGCY	9 cut(s)	6, 152, 384, 447, 628, 824, 911, 1056, 1079
CviQI	GTAC	3 cut(s)	185, 551, 835
DdeI	CTNAG	5 cut(s)	141, 148, 287, 639, 761
DpnI	GATC	5 cut(s)	248, 484, 676, 694, 995
DpnII	GATC	5 cut(s)	246, 482, 674, 692, 993
Eam1104I	CTCTTC	4 cut(s)	13, 63, 339, 617
EarI	CTCTTC	4 cut(s)	13, 63, 339, 617
Ecl136II	GAGCTC	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	8, 386
Eco53kI	GAGCTC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	1065
Eco88I	CYCGRG	1 cut(s)	817
EcoICRI	GAGCTC	1 cut(s)	384
EcoRII	CCWGG	5 cut(s)	157, 209, 273, 442, 615
EcoT38I	GRGCYC	2 cut(s)	8, 386
FaeI	CATG	1 cut(s)	710
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	1 cut(s)	706
FauNDI	CATATG	1 cut(s)	668
Fnu4HI	GCNGC	2 cut(s)	825, 1046
FokI	GGATG	2 cut(s)	110, 362
FriOI	GRGCYC	2 cut(s)	8, 386
Fsp4HI	GCNGC	2 cut(s)	825, 1046
FspBI	CTAG	2 cut(s)	266, 800
GlaI	GCGC	1 cut(s)	976
GluI	GCNGC	2 cut(s)	825, 1046
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	2 cut(s)	128, 818
HhaI	GCGC	1 cut(s)	977
Hin1II	CATG	1 cut(s)	710
Hin6I	GCGC	1 cut(s)	975
HinP1I	GCGC	1 cut(s)	975
HindIII	AAGCTT	1 cut(s)	1077
HinfI	GANTC	3 cut(s)	270, 772, 983
HpaII	CCGG	2 cut(s)	128, 818
HphI	GGTGA	4 cut(s)	63, 241, 416, 445
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	6 cut(s)	63, 142, 369, 480, 1020, 1084
Hpy188III	TCNNGA	2 cut(s)	707, 953
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	463, 522, 877
HpyCH4V	TGCA	5 cut(s)	233, 260, 827, 943, 1045
HpyF10VI	GCNNNNNNNGC	1 cut(s)	974
HpyF3I	CTNAG	5 cut(s)	141, 148, 287, 639, 761
Hsp92II	CATG	1 cut(s)	710
HspAI	GCGC	1 cut(s)	975
KpnI	GGTACC	1 cut(s)	554
Kzo9I	GATC	5 cut(s)	246, 482, 674, 692, 993
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	3 cut(s)	381, 686, 821
Lsp1109I	GCAGC	2 cut(s)	811, 1057
LweI	GCATC	2 cut(s)	269, 1036
MaeI	CTAG	2 cut(s)	266, 800
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	5 cut(s)	248, 484, 676, 694, 995
MboI	GATC	5 cut(s)	246, 482, 674, 692, 993
MboII	GAAGA	7 cut(s)	26, 50, 356, 479, 482, 604, 1072
MfeI	CAATTG	2 cut(s)	534, 544
MflI	RGATCY	2 cut(s)	482, 692
MhlI	GDGCHC	5 cut(s)	8, 147, 193, 386, 950
MluCI	AATT	8 cut(s)	294, 534, 544, 727, 732, 807, 896, 1040
MmeI	TCCRAC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	2 cut(s)	215, 243
MspA1I	CMGCKG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	2 cut(s)	128, 818
MspR9I	CCNGG	8 cut(s)	128, 159, 211, 275, 444, 617, 818, 819
MunI	CAATTG	2 cut(s)	534, 544
MvaI	CCWGG	5 cut(s)	159, 211, 275, 444, 617
MwoI	GCNNNNNNNGC	1 cut(s)	974
NciI	CCSGG	3 cut(s)	128, 818, 819
NdeI	CATATG	1 cut(s)	668
NdeII	GATC	5 cut(s)	246, 482, 674, 692, 993
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	3 cut(s)	132, 531, 552
NmuCI	GTSAC	1 cut(s)	451
PagI	TCATGA	1 cut(s)	706
PaqCI	CACCTGC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	270, 772, 983
Pfl23II	CGTACG	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	826, 1047
PsiI	TTATAA	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	386
Psp6I	CCWGG	5 cut(s)	157, 209, 273, 442, 615
PspGI	CCWGG	5 cut(s)	157, 209, 273, 442, 615
PspLI	CGTACG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	132, 531, 552
PspPI	GGNCC	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	482, 692
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	3 cut(s)	186, 552, 836
RsaNI	GTAC	3 cut(s)	185, 551, 835
SacI	GAGCTC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	215, 243
SatI	GCNGC	2 cut(s)	825, 1046
Sau3AI	GATC	5 cut(s)	246, 482, 674, 692, 993
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	8 cut(s)	128, 159, 211, 275, 444, 617, 818, 819
SduI	GDGCHC	5 cut(s)	8, 147, 193, 386, 950
SfaNI	GCATC	2 cut(s)	269, 1036
SmaI	CCCGGG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	8 cut(s)	294, 534, 544, 727, 732, 807, 896, 1040
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	266, 800
SstI	GAGCTC	1 cut(s)	386
StyD4I	CCNGG	8 cut(s)	126, 157, 209, 273, 442, 615, 816, 817
TaaI	ACNGT	3 cut(s)	463, 522, 877
TaqI	TCGA	3 cut(s)	417, 954, 992
TasI	AATT	8 cut(s)	294, 534, 544, 727, 732, 807, 896, 1040
TfiI	GAWTC	3 cut(s)	270, 772, 983
Tru1I	TTAA	2 cut(s)	215, 243
Tru9I	TTAA	2 cut(s)	215, 243
TscAI	CASTG	4 cut(s)	344, 510, 684, 723
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	824, 1045
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	5 cut(s)	299, 418, 638, 695, 764
TspMI	CCCGGG	1 cut(s)	817
TspRI	CASTG	4 cut(s)	344, 510, 684, 723
Vha464I	CTTAAG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	294, 727
XmaI	CCCGGG	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	2 cut(s)	266, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.