Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002317

Physical Location & Seq

Genomic Coordinates Reverse (-)

18550540 .. 18558022

Gene Structure 7483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGGCAGACAGTGAGACGATTGTTGCTCAAACATCTGCAGTGATGGGGTATACATCAGCAGGATATACTTCAACGGGATATGCTGATGCCAGCTCAAATATTGCTACTGATGCAGGTGCATTGCATTCTGAGGCTACCCCAGAGTTTTCTAATACACCTGGCGGTTCTAACATAGGCGATGGAAATGCATATTCTGCGGATCCCAATTCTCTCATGCAAGAAACACAAGGTTACACAGCATATGAGACCAAACCGGCTGTTGGAGTGACAGATGCTAGTGGGAATGTTGTTAGTAATGAAAATGACGCCTTGGAGTCATCTCAAGTTGCTAGTTATGATTCTTCTATGAATGGTGTTATTGCTTCTGGAGTGGGAACTGTTTCATCAGTTCATAATGGCGATGCTTCAGATAATGCCGAACCTCTTGATCCACAACAATTTGGGGATGCTTCTGCCATGTCTGTCGAAGAAGATAGACTGTGGAACATTGTGAGGGCTAATTCCTTGGATTTCAATGCCTGGACTGCTTTAATTGAAGAGACAGAGAAGATTGCAGAGGATAACATATTGAAAATTCGGAAAGTTTATGATGCTTTTTTAGCAGAGTTTCCATTATGTTATGGTTATTGGAAAAAGTATGCGGATCATGAGGCACGTCTAGGTTCTATCGATAAAGTTGTGGAGGTTTATGAACGTGCAGTTCAAGGTGTTACCTATTCAGTTGATATCTGGTTGCATTACTGCATTTTTGCTATAAGCACATATGGAGATCCAGACACTATTAGAAGGCTTTTTGAGCGAGGACTTGCTTATGTTGGAACAGATTACCTGTCCTTTACTCTGTGGGATAAGTACATAGAATATGAGTACATGCAGCAGGAGTGGGGCCGCCTTGCCATGATCTATTCACGAATATTAGAGAACCCAAATCAGCAACTGGATCGGTATTGGAACAGCTTTAAGGAGTTAGCTGGAAGTCGGCCACTCTCAGAATTGAGGACTGCTGAAGAAGCTGCAGCAGCAGGAGGTGCACATTCAGAGGGTATTGACAAAGTAAATGGGGAAGATGTTCAATCTGATGGTGCAGAACAATCTCCTAAACCTGTAAGTGCTGACTTAACAGAAGCAGAGGAGTTGGAGAAGTATATCACCGTTAGAGAAGATGTGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTAGTTTTGAAACAGCTATTAGGAGGCCCTACTTTCACGTGCGGCCTCTCAATTCTGTAGAGCTTGAAAATTGGACCAGCTACCTAGACTTTATAGAAAGGGAAGGCGACTTGAGCAAGGTTGTCAAGCTATATGAAAGGTGCCTAATTGCTTGTGCTAATTATCCTGAATATTGGATTCGATATGTTCTATGCATGGAGGCCAGTGGAAGTATGGATATTGCCAATAATGCTCTTGCACGGGCAACCCAGGTTTTTGTGAAGAGACAACCGGAGATTCACCTTTTTGCTGCTCGATTCAAAGAGCAGAGTGGGGATATACCTGGTGCTCAAGCTGCCTATCAACTTGTACATTCTGAACTCTCGCCTGGTCTTCTTGAAGCAATCGTGAAGCATGCAAATATGGAACACCGTTTGGGAAATGTGGAAGCTGCCTACTCTTTATACGAACAGGCCATTGCCATTGAAAAAGGAAAAGAGCATTCACAGACGTTACCCATGTTGTATGCTCAGTACTCTCGGTTCACTTACCTGGTTTCTTTGAATGCGGAAAAAGCTAGAGAAATTTTAGATGGAGCACTCGAGCATGTACAACTGTCAAGAGCATTTCTTGAGTCCATGATAGTTTTCGAGACAATACAGCCACTGCCAAAGCGAATTGATCACATAGATTCATTGGTTGTGAAGTTCATAGAGCCCAGCTCAGAGAGCCCCAATTTTGCTAGCATTGCTGACAGAGAAGAGCTATCTGGCATCTATTTGGAGTTTGTTAATCTCTTTGGAGATGCAGTGTCTATCAAGAAGGCTGAGGATCGACATGCTAAGCTCTTCATACCTCATAGGAGCAGCACGTCAGAGTTGAAAAAACGTCAAGCTGAGGACTTTCTATCTTCAGATAAAGTGAAGCTAGCTAAAGCTTACTCTGGTGTTCCATCGCCCGCCCAGTCGATCATGGGAGCATATCCAAATGCACAGAGCCAATGGCCAGCTGGTTATGGTGCACAGCCTCAAGCTTGGCCACCGGCTACGCAAGCTACTCAGGGACAACAGTGGCCAGCTGGTTATACCCAACAGCCGTACAATGCATATGGTGGTTATGGAACTGCTGGCTACGCTAATCCGCAAGCGCCCGTGGTGGCGCCACAAACTGCTGCTTATGGTGCTTATCCTTCTACATATCCTGCTCAGCAGGCCGTCCCGCCACAAAGTTACGCGCATCCAACCGTGGCAGCGGTAGCACCAGCGGCAGCAGTAGCACCGGCTCCGCAGCCTGCTTCAGTTCCTCAGGCGTATTATGGGAGTTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000395 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005685 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0071004 GO:0071010 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

837

Amino Acids

92.06

Weight (kDa)

4.8

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_N	PF23240	158 - 322	7.7e-62	PRP39 N-terminal HAT repeat
Suf	PF05843	160 - 322	4e-15	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	207 - 326	7e-08	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
Suf	PF05843	380 - 593	1.6e-06	Suppressor of forked protein (Suf)
HAT_PRP39_C	PF23241	399 - 538	4.8e-47	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04080 AT1G04080 AT1G04080 AT1G04080 AT1G04080
fragaria_vesca	FvH4_2g20550
malus_domestica	MD00G1060100.v1.1
prunus_persica	Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1 Prupe.8G215900_v2.0.a1
pyrus_communis	pycom05g17390 pycom10g15270
rosa_chinensis	RchiOBHm_Chr1g0327141 RchiOBHm_Chr6g0282561 RchiOBHm_Chr6g0286711
rosa_laevigata	RLG00000007391 RLG00000012550 RLG00000030995
rosa_multiflora	Rmu_co8283097.1_g000001 Rmu_co8332197.1_g000001 Rmu_sc0001468.1_g000022
rosa_roxburghii	Rroxscaffold_1G00034270 Rroxscaffold_1G00060390 Rroxscaffold_7G00182090
rosa_rugosa	Rorug05G0468800 Rorug06G0182100 Rorug06G0182200
rosa_samantha	Rh2CG306300 Rh5BG355000 Rh5BG355100 Rh5BG357900 Rh6AG023000 Rh6AG294900 Rh6BG204700 Rh6BG298100 Rh6BG298200 Rh6CG298600 Rh6DG290600
rosa_wichuraiana	Rw1G013170 Rw5G035150 Rw6G025370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccB1I	GGYRCC	2 cut(s)	1341, 2338
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	2414
AclWI	GGATC	7 cut(s)	194, 207, 422, 651, 764, 948, 2019
AcoI	YGGCCR	4 cut(s)	980, 2183, 2216, 2252
AcsI	RAATTY	2 cut(s)	573, 1764
AcuI	CTGAAG	4 cut(s)	390, 1026, 2076, 2460
AcvI	CACGTG	1 cut(s)	1240
AcyI	GRCGYC	2 cut(s)	306, 2339
AfaI	GTAC	6 cut(s)	854, 869, 1551, 1715, 1791, 2279
AfiI	CCNNNNNNNGG	1 cut(s)	260
AjiI	CACGTC	2 cut(s)	656, 2052
AjnI	CCWGG	6 cut(s)	157, 518, 1449, 1522, 1567, 1731
Alw21I	GWGCWC	4 cut(s)	1033, 1531, 1780, 2203
Alw26I	GTCTC	5 cut(s)	8, 239, 533, 1459, 1826
Alw44I	GTGCAC	2 cut(s)	1029, 2199
AlwI	GGATC	7 cut(s)	194, 207, 422, 651, 764, 948, 2019
AlwNI	CAGNNNCTG	2 cut(s)	937, 1846
Ama87I	CYCGRG	1 cut(s)	1781
ApaLI	GTGCAC	2 cut(s)	1029, 2199
ApoI	RAATTY	2 cut(s)	573, 1764
Asp700I	GAANNNNTTC	2 cut(s)	379, 1068
AspLEI	GCGC	3 cut(s)	2329, 2341, 2416
AspS9I	GGNCC	3 cut(s)	886, 1227, 1275
AsuHPI	GGTGA	2 cut(s)	1141, 1472
AsuNHI	GCTAGC	2 cut(s)	1922, 2107
AvaI	CYCGRG	1 cut(s)	1781
AvaII	GGWCC	1 cut(s)	1275
AxyI	CCTNAGG	1 cut(s)	2484
BaeGI	GKGCMC	2 cut(s)	1033, 2203
BalI	TGGCCA	3 cut(s)	2185, 2218, 2254
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	2 cut(s)	1341, 2338
BanII	GRGCYC	2 cut(s)	1899, 1913
BbrPI	CACGTG	1 cut(s)	1240
BbsI	GAAGAC	1 cut(s)	1565
Bbv12I	GWGCWC	4 cut(s)	1033, 1531, 1780, 2203
BbvCI	CCTCAGC	2 cut(s)	2007, 2076
BccI	CCATC	5 cut(s)	37, 173, 1073, 1766, 2140
BceAI	ACGGC	2 cut(s)	2260, 2378
BcgI	CGANNNNNNTGC	4 cut(s)	167, 201, 923, 957
BciT130I	CCWGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
BclI	TGATCA	1 cut(s)	1861
BcoDI	GTCTC	5 cut(s)	8, 239, 533, 1459, 1826
BfaI	CTAG	7 cut(s)	276, 330, 659, 1286, 1758, 1923, 2108
BfmI	CTRYAG	3 cut(s)	36, 1014, 1257
BfoI	RGCGCY	2 cut(s)	2330, 2342
BfuAI	ACCTGC	1 cut(s)	104
BlpI	GCTNAGC	2 cut(s)	2022, 2385
BmcAI	AGTACT	1 cut(s)	1715
Bme1390I	CCNGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
Bme18I	GGWCC	1 cut(s)	1275
BmeT110I	CYCGRG	1 cut(s)	1781
BmgBI	CACGTC	2 cut(s)	656, 2052
BmgT120I	GGNCC	3 cut(s)	886, 1227, 1275
BmiI	GGNNCC	5 cut(s)	201, 887, 1343, 2340, 2463
BmrFI	CCNGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
BmrI	ACTGGG	1 cut(s)	2137
BmsI	GCATC	9 cut(s)	76, 100, 262, 391, 436, 580, 1962, 1975, 2425
BmtI	GCTAGC	2 cut(s)	1926, 2111
BmuI	ACTGGG	1 cut(s)	2137
BpiI	GAAGAC	1 cut(s)	1565
BplI	GAGNNNNNCTC	2 cut(s)	1886, 1918
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	2 cut(s)	2007, 2076
Bpu1102I	GCTNAGC	2 cut(s)	2022, 2385
BpuEI	CTTGAG	5 cut(s)	306, 1333, 1515, 1832, 2193
Bsa29I	ATCGAT	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	1240
BsaHI	GRCGYC	2 cut(s)	306, 2339
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	5 cut(s)	309, 504, 1449, 2331, 2424
BsaWI	WCCGGW	1 cut(s)	1471
BsaXI	ACNNNNNCTCC	2 cut(s)	1974, 2004
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	3 cut(s)	253, 2221, 2458
Bse1I	ACTGG	3 cut(s)	942, 1404, 2143
Bse21I	CCTNAGG	1 cut(s)	2484
Bse3DI	GCAATG	3 cut(s)	119, 1656, 1926
BseBI	CCWGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	5 cut(s)	309, 504, 1449, 2331, 2424
BseGI	GGATG	2 cut(s)	451, 2416
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	3 cut(s)	119, 1656, 1926
BseMII	CTCAG	9 cut(s)	120, 1002, 1724, 1917, 1998, 2067, 2252, 2399, 2498
BseNI	ACTGG	3 cut(s)	942, 1404, 2143
BseRI	GAGGAG	1 cut(s)	1145
BseSI	GKGCMC	2 cut(s)	1033, 2203
BseYI	CCCAGC	1 cut(s)	1898
BsgI	GTGCAG	2 cut(s)	717, 1104
Bsh1236I	CGCG	1 cut(s)	2414
BshNI	GGYRCC	2 cut(s)	1341, 2338
BshVI	ATCGAT	1 cut(s)	669
BsiHKAI	GWGCWC	4 cut(s)	1033, 1531, 1780, 2203
BsiHKCI	CYCGRG	1 cut(s)	1781
BsiSI	CCGG	4 cut(s)	254, 1472, 2222, 2459
BslFI	GGGAC	2 cut(s)	2256, 2381
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	5 cut(s)	8, 239, 533, 1459, 1826
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	2256, 2381
BsmI	GAATGC	3 cut(s)	124, 1681, 1750
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	1781
Bsp1286I	GDGCHC	6 cut(s)	1033, 1531, 1780, 1899, 1913, 2203
Bsp1407I	TGTACA	2 cut(s)	1549, 1789
Bsp1720I	GCTNAGC	2 cut(s)	2022, 2385
BspCNI	CTCAG	9 cut(s)	121, 1001, 1723, 1916, 1999, 2068, 2251, 2398, 2497
BspDI	ATCGAT	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	2414
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	5 cut(s)	201, 887, 1343, 2340, 2463
BspMAI	CTGCAG	2 cut(s)	40, 1018
BspMI	ACCTGC	1 cut(s)	104
BspOI	GCTAGC	2 cut(s)	1926, 2111
BspPI	GGATC	7 cut(s)	194, 207, 422, 651, 764, 948, 2019
BspQI	GCTCTTC	2 cut(s)	1935, 2033
BspT107I	GGYRCC	2 cut(s)	1341, 2338
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	3 cut(s)	119, 1656, 1926
BsrFI	RCCGGY	3 cut(s)	253, 2221, 2458
BsrGI	TGTACA	2 cut(s)	1549, 1789
BsrI	ACTGG	3 cut(s)	942, 1404, 2143
BssAI	RCCGGY	3 cut(s)	253, 2221, 2458
BssECI	CCNNGG	5 cut(s)	309, 504, 1449, 2331, 2424
BssNAI	GTATAC	1 cut(s)	51
BssNI	GRCGYC	2 cut(s)	306, 2339
BssT1I	CCWWGG	2 cut(s)	309, 504
Bst1107I	GTATAC	1 cut(s)	51
Bst2UI	CCWGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
Bst4CI	ACNGT	8 cut(s)	11, 379, 480, 1153, 1613, 1797, 2250, 2425
Bst6I	CTCTTC	4 cut(s)	531, 1457, 1935, 2033
BstACI	GRCGYC	2 cut(s)	306, 2339
BstAPI	GCANNNNNTGC	2 cut(s)	194, 1028
BstAUI	TGTACA	2 cut(s)	1549, 1789
BstBAI	YACGTR	1 cut(s)	1240
BstDSI	CCRYGG	2 cut(s)	2331, 2424
BstF5I	GGATG	2 cut(s)	451, 2416
BstFNI	CGCG	1 cut(s)	2414
BstH2I	RGCGCY	2 cut(s)	2330, 2342
BstHHI	GCGC	3 cut(s)	2329, 2341, 2416
BstMAI	GTCTC	5 cut(s)	8, 239, 533, 1459, 1826
BstNI	CCWGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
BstNSI	RCATGY	4 cut(s)	874, 1598, 1790, 2021
BstSCI	CCNGG	6 cut(s)	157, 518, 1449, 1522, 1567, 1731
BstSFI	CTRYAG	3 cut(s)	36, 1014, 1257
BstSLI	GKGCMC	2 cut(s)	1033, 2203
BstUI	CGCG	1 cut(s)	2414
BstV2I	GAAGAC	1 cut(s)	1565
BstX2I	RGATCY	2 cut(s)	199, 769
BstYI	RGATCY	2 cut(s)	199, 769
BstZ17I	GTATAC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	669
Bsu36I	CCTNAGG	1 cut(s)	2484
BsuTUI	ATCGAT	1 cut(s)	669
BtgI	CCRYGG	2 cut(s)	2331, 2424
BtgZI	GCGATG	3 cut(s)	192, 414, 2118
BtrI	CACGTC	2 cut(s)	656, 2052
BtsCI	GGATG	2 cut(s)	451, 2416
BtsI	GCAGTG	3 cut(s)	45, 1844, 1995
BtsIMutI	CAGTG	6 cut(s)	16, 45, 1411, 1844, 1995, 2255
BveI	ACCTGC	1 cut(s)	104
CaiI	CAGNNNCTG	2 cut(s)	937, 1846
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	3 cut(s)	2329, 2341, 2416
Cfr10I	RCCGGY	3 cut(s)	253, 2221, 2458
Cfr13I	GGNCC	3 cut(s)	886, 1227, 1275
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	1 cut(s)	314
CsiI	ACCWGGT	2 cut(s)	1522, 1731
Csp6I	GTAC	6 cut(s)	853, 868, 1550, 1714, 1790, 2278
CviQI	GTAC	6 cut(s)	853, 868, 1550, 1714, 1790, 2278
DinI	GGCGCC	1 cut(s)	2340
EaeI	YGGCCR	4 cut(s)	980, 2183, 2216, 2252
Eam1104I	CTCTTC	4 cut(s)	531, 1457, 1935, 2033
EarI	CTCTTC	4 cut(s)	531, 1457, 1935, 2033
Eco130I	CCWWGG	2 cut(s)	309, 504
Eco24I	GRGCYC	2 cut(s)	1899, 1913
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	1275
Eco57I	CTGAAG	4 cut(s)	390, 1026, 2076, 2460
Eco72I	CACGTG	1 cut(s)	1240
Eco81I	CCTNAGG	1 cut(s)	2484
Eco88I	CYCGRG	1 cut(s)	1781
EcoO109I	RGGNCCY	1 cut(s)	1227
EcoRII	CCWGG	6 cut(s)	157, 518, 1449, 1522, 1567, 1731
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	309, 504
EcoT22I	ATGCAT	3 cut(s)	190, 1397, 2287
EcoT38I	GRGCYC	2 cut(s)	1899, 1913
EgeI	GGCGCC	1 cut(s)	2340
EheI	GGCGCC	1 cut(s)	2340
ErhI	CCWWGG	2 cut(s)	309, 504
Esp3I	CGTCTC	1 cut(s)	8
FaqI	GGGAC	2 cut(s)	2256, 2381
FauI	CCCGC	2 cut(s)	2146, 2406
FauNDI	CATATG	3 cut(s)	241, 763, 2287
FbaI	TGATCA	1 cut(s)	1861
FblI	GTMKAC	1 cut(s)	50
FokI	GGATG	2 cut(s)	458, 2403
FriOI	GRGCYC	2 cut(s)	1899, 1913
FspBI	CTAG	7 cut(s)	276, 330, 659, 1286, 1758, 1923, 2108
GlaI	GCGC	3 cut(s)	2328, 2340, 2415
GsaI	CCCAGC	1 cut(s)	1902
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	2 cut(s)	2330, 2342
HapII	CCGG	4 cut(s)	254, 1472, 2222, 2459
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	3 cut(s)	2329, 2341, 2416
Hin1I	GRCGYC	2 cut(s)	306, 2339
Hin6I	GCGC	3 cut(s)	2327, 2339, 2414
HinP1I	GCGC	3 cut(s)	2327, 2339, 2414
HindIII	AAGCTT	2 cut(s)	2115, 2211
HinfI	GANTC	8 cut(s)	314, 338, 1190, 1378, 1477, 1497, 1814, 1871
HpaII	CCGG	4 cut(s)	254, 1472, 2222, 2459
HphI	GGTGA	2 cut(s)	1141, 1472
Hpy166II	GTNNAC	4 cut(s)	51, 1031, 1725, 2201
Hpy8I	GTNNAC	4 cut(s)	51, 1031, 1725, 2201
HpyAV	CCTTC	4 cut(s)	780, 1298, 1996, 2379
HpyCH4III	ACNGT	8 cut(s)	11, 379, 480, 1153, 1613, 1797, 2250, 2425
HpyCH4IV	ACGT	6 cut(s)	655, 694, 1239, 1691, 2051, 2068
HpySE526I	ACGT	6 cut(s)	655, 694, 1239, 1691, 2051, 2068
Hsp92I	GRCGYC	2 cut(s)	306, 2339
HspAI	GCGC	3 cut(s)	2327, 2339, 2414
KasI	GGCGCC	1 cut(s)	2338
Ksp22I	TGATCA	1 cut(s)	1861
LguI	GCTCTTC	2 cut(s)	1935, 2033
LmnI	GCTCC	4 cut(s)	1775, 2043, 2156, 2467
LweI	GCATC	9 cut(s)	76, 100, 262, 391, 436, 580, 1962, 1975, 2425
MabI	ACCWGGT	2 cut(s)	1522, 1731
MaeI	CTAG	7 cut(s)	276, 330, 659, 1286, 1758, 1923, 2108
MaeII	ACGT	6 cut(s)	655, 694, 1239, 1691, 2051, 2068
MaeIII	GTNAC	6 cut(s)	230, 265, 709, 1692, 2408, 2501
MflI	RGATCY	2 cut(s)	199, 769
MhlI	GDGCHC	6 cut(s)	1033, 1531, 1780, 1899, 1913, 2203
MlsI	TGGCCA	3 cut(s)	2185, 2218, 2254
MluNI	TGGCCA	3 cut(s)	2185, 2218, 2254
Mly113I	GGCGCC	1 cut(s)	2339
MlyI	GAGTC	2 cut(s)	323, 1823
MmeI	TCCRAC	4 cut(s)	241, 796, 1116, 2444
Mox20I	TGGCCA	3 cut(s)	2185, 2218, 2254
Mph1103I	ATGCAT	3 cut(s)	190, 1397, 2287
MroXI	GAANNNNTTC	2 cut(s)	379, 1068
MscI	TGGCCA	3 cut(s)	2185, 2218, 2254
MseI	TTAA	4 cut(s)	530, 960, 1118, 1971
Msp20I	TGGCCA	3 cut(s)	2185, 2218, 2254
MspA1I	CMGCKG	4 cut(s)	2189, 2258, 2432, 2444
MspI	CCGG	4 cut(s)	254, 1472, 2222, 2459
MspR9I	CCNGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
Mva1269I	GAATGC	3 cut(s)	124, 1681, 1750
MvaI	CCWGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
MvnI	CGCG	1 cut(s)	2414
NarI	GGCGCC	1 cut(s)	2339
NdeI	CATATG	3 cut(s)	241, 763, 2287
NheI	GCTAGC	2 cut(s)	1922, 2107
NlaIV	GGNNCC	5 cut(s)	201, 887, 1343, 2340, 2463
NmuCI	GTSAC	1 cut(s)	265
NsiI	ATGCAT	3 cut(s)	190, 1397, 2287
NspI	RCATGY	4 cut(s)	874, 1598, 1790, 2021
PaeI	GCATGC	1 cut(s)	1598
PaeR7I	CTCGAG	1 cut(s)	1781
PagI	TCATGA	1 cut(s)	646
PaqCI	CACCTGC	1 cut(s)	104
PciSI	GCTCTTC	2 cut(s)	1935, 2033
PctI	GAATGC	3 cut(s)	124, 1681, 1750
PdmI	GAANNNNTTC	2 cut(s)	379, 1068
PfeI	GAWTC	6 cut(s)	338, 1190, 1378, 1477, 1497, 1871
PleI	GAGTC	2 cut(s)	322, 1822
PluTI	GGCGCC	1 cut(s)	2342
PmaCI	CACGTG	1 cut(s)	1240
PmlI	CACGTG	1 cut(s)	1240
PpsI	GAGTC	2 cut(s)	322, 1822
Ppu21I	YACGTR	1 cut(s)	1240
Psp6I	CCWGG	6 cut(s)	157, 518, 1449, 1522, 1567, 1731
PspCI	CACGTG	1 cut(s)	1240
PspFI	CCCAGC	1 cut(s)	1898
PspGI	CCWGG	6 cut(s)	157, 518, 1449, 1522, 1567, 1731
PspN4I	GGNNCC	5 cut(s)	201, 887, 1343, 2340, 2463
PspPI	GGNCC	3 cut(s)	886, 1227, 1275
PspXI	VCTCGAGB	1 cut(s)	1781
PsrI	GAACNNNNNNTAC	2 cut(s)	1706, 1738
PstI	CTGCAG	2 cut(s)	40, 1018
PstNI	CAGNNNCTG	2 cut(s)	937, 1846
PsuI	RGATCY	2 cut(s)	199, 769
PvuII	CAGCTG	2 cut(s)	2189, 2258
RsaI	GTAC	6 cut(s)	854, 869, 1551, 1715, 1791, 2279
RsaNI	GTAC	6 cut(s)	853, 868, 1550, 1714, 1790, 2278
SapI	GCTCTTC	2 cut(s)	1935, 2033
SaqAI	TTAA	4 cut(s)	530, 960, 1118, 1971
Sau96I	GGNCC	3 cut(s)	886, 1227, 1275
ScaI	AGTACT	1 cut(s)	1715
SchI	GAGTC	2 cut(s)	323, 1823
ScrFI	CCNGG	6 cut(s)	159, 520, 1451, 1524, 1569, 1733
SduI	GDGCHC	6 cut(s)	1033, 1531, 1780, 1899, 1913, 2203
SexAI	ACCWGGT	2 cut(s)	1522, 1731
SfaNI	GCATC	9 cut(s)	76, 100, 262, 391, 436, 580, 1962, 1975, 2425
SfcI	CTRYAG	3 cut(s)	36, 1014, 1257
SfoI	GGCGCC	1 cut(s)	2340
Sfr274I	CTCGAG	1 cut(s)	1781
SinI	GGWCC	1 cut(s)	1275
SlaI	CTCGAG	1 cut(s)	1781
SmlI	CTYRAG	6 cut(s)	321, 1312, 1530, 1781, 1811, 2208
SmoI	CTYRAG	6 cut(s)	321, 1312, 1530, 1781, 1811, 2208
SphI	GCATGC	1 cut(s)	1598
SspDI	GGCGCC	1 cut(s)	2338
SspI	AATATT	3 cut(s)	100, 915, 1373
SspMI	CTAG	7 cut(s)	276, 330, 659, 1286, 1758, 1923, 2108
StyD4I	CCNGG	6 cut(s)	157, 518, 1449, 1522, 1567, 1731
StyI	CCWWGG	2 cut(s)	309, 504
TaaI	ACNGT	8 cut(s)	11, 379, 480, 1153, 1613, 1797, 2250, 2425
TaiI	ACGT	6 cut(s)	658, 697, 1242, 1694, 2054, 2071
TaqI	TCGA	9 cut(s)	465, 669, 1188, 1381, 1495, 1782, 1830, 2014, 2147
TatI	WGTACW	5 cut(s)	852, 867, 1549, 1713, 1789
TauI	GCSGC	3 cut(s)	891, 1246, 2447
TfiI	GAWTC	6 cut(s)	338, 1190, 1378, 1477, 1497, 1871
Tru1I	TTAA	4 cut(s)	530, 960, 1118, 1971
Tru9I	TTAA	4 cut(s)	530, 960, 1118, 1971
TscAI	CASTG	6 cut(s)	16, 45, 1411, 1851, 1995, 2255
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	9 cut(s)	312, 362, 372, 380, 705, 1350, 1863, 1879, 2020
TspRI	CASTG	6 cut(s)	16, 45, 1411, 1851, 1995, 2255
VneI	GTGCAC	2 cut(s)	1029, 2199
VpaK11BI	GGWCC	1 cut(s)	1275
XapI	RAATTY	2 cut(s)	573, 1764
XceI	RCATGY	4 cut(s)	874, 1598, 1790, 2021
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1411, 2186
XhoI	CTCGAG	1 cut(s)	1781
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	2 cut(s)	379, 1068
XspI	CTAG	7 cut(s)	276, 330, 659, 1286, 1758, 1923, 2108
ZrmI	AGTACT	1 cut(s)	1715
Zsp2I	ATGCAT	3 cut(s)	190, 1397, 2287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.