pycom11g20700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003464
Physical Location & Seq
Forward (+)
23815526 .. 23815765
240 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGGAGGTGAAAGGCGGGCGTGCAAGTTTGAGATGGCGTTGAAGTCCATGCAGCGCAAGATCGATGTTTCGGCTGCGGCAGATCACTCATCAGCTGCTCCCAATGAGGCCAAAACCGGTTGGCGCAATATTATTGCTGCTAGGGCTGCGAGTCCGCCAAATACGATGGCCCTTGAGGATAAGAGAAGAAGAGAGAAAGTTGAAAATCTTATTCACTTAGTCTGCTGGGGACCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.76

Weight (kDa)

9.78

Isoelectric Point (pI)

63.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 16, 77, 155
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 43, 203
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 2 cut(s) 108, 168
ApeKI GCWGC 5 cut(s) 52, 74, 95, 137, 146
AsiGI ACCGGT 1 cut(s) 116
AspLEI GCGC 2 cut(s) 57, 126
AspS9I GGNCC 2 cut(s) 169, 230
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 230
BbvI GCAGC 5 cut(s) 61, 64, 82, 124, 133
BccI CCATC 2 cut(s) 28, 160
BfaI CTAG 1 cut(s) 141
BisI GCNGC 6 cut(s) 53, 75, 78, 96, 138, 147
BlsI GCNGC 6 cut(s) 54, 76, 79, 97, 139, 148
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 169, 230
BmiI GGNNCC 2 cut(s) 231, 232
BpuEI CTTGAG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 116
Bse118I RCCGGY 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 63
BseXI GCAGC 5 cut(s) 61, 64, 82, 124, 133
BseYI CCCAGC 1 cut(s) 225
BshFI GGCC 2 cut(s) 110, 170
BshTI ACCGGT 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 63
BsiSI CCGG 1 cut(s) 117
BsnI GGCC 2 cut(s) 110, 170
Bsp143I GATC 2 cut(s) 60, 82
BspACI CCGC 3 cut(s) 16, 77, 155
BspANI GGCC 2 cut(s) 110, 170
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 231, 232
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 2 cut(s) 60, 82
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 18, 22
BstDEI CTNAG 1 cut(s) 217
BstHHI GCGC 2 cut(s) 57, 126
BstKTI GATC 2 cut(s) 63, 85
BstMBI GATC 2 cut(s) 60, 82
BstMWI GCNNNNNNNGC 2 cut(s) 143, 146
BstV1I GCAGC 5 cut(s) 61, 64, 82, 124, 133
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 2 cut(s) 110, 170
BsuTUI ATCGAT 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 18, 22
CfoI GCGC 2 cut(s) 57, 126
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 169, 230
ClaI ATCGAT 1 cut(s) 63
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 74, 95, 110, 146, 170
CviKI_1 RGCY 5 cut(s) 74, 95, 110, 146, 170
DdeI CTNAG 1 cut(s) 217
DpnI GATC 2 cut(s) 62, 84
DpnII GATC 2 cut(s) 60, 82
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 230
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FatI CATG 1 cut(s) 48
FauI CCCGC 1 cut(s) 9
Fnu4HI GCNGC 6 cut(s) 53, 75, 78, 96, 138, 147
Fsp4HI GCNGC 6 cut(s) 53, 75, 78, 96, 138, 147
FspBI CTAG 1 cut(s) 141
GlaI GCGC 2 cut(s) 56, 125
GluI GCNGC 6 cut(s) 53, 75, 78, 96, 138, 147
GsaI CCCAGC 1 cut(s) 229
HaeIII GGCC 2 cut(s) 110, 170
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 57, 126
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 2 cut(s) 55, 124
HinP1I GCGC 2 cut(s) 55, 124
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 24, 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 146
HpyF3I CTNAG 1 cut(s) 217
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 2 cut(s) 55, 124
KflI GGGWCCC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 60, 82
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 2 cut(s) 130, 211
Lsp1109I GCAGC 5 cut(s) 61, 64, 82, 124, 133
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 62, 84
MboI GATC 2 cut(s) 60, 82
MboII GAAGA 2 cut(s) 198, 201
MluCI AATT 1 cut(s) 235
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 2 cut(s) 100, 169
MseI TTAA 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 143, 146
NdeII GATC 2 cut(s) 60, 82
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 231, 232
PinAI ACCGGT 1 cut(s) 116
PkrI GCNGC 6 cut(s) 54, 76, 79, 97, 139, 148
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 231, 232
PspPI GGNCC 2 cut(s) 169, 230
PspPPI RGGWCCY 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 6 cut(s) 53, 75, 78, 96, 138, 147
Sau3AI GATC 2 cut(s) 60, 82
Sau96I GGNCC 2 cut(s) 169, 230
SchI GAGTC 1 cut(s) 160
SetI ASST 2 cut(s) 10, 97
SgeI CNNG 9 cut(s) 29, 33, 37, 61, 70, 129, 153, 162, 185
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 235
SsiI CCGC 3 cut(s) 16, 77, 155
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 141
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 235
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TseI GCWGC 5 cut(s) 52, 74, 95, 137, 146
VpaK11BI GGWCC 1 cut(s) 230
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.