Rroxscaffold_5G00381270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003464
Physical Location & Seq
Forward (+)
61306208 .. 61307764
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381270.1

Sequence Viewer

Length: 507 bp
ATGCCACCGAGACTCAACCCATTTCTCCCAAAATCGAACGGTTCCAAAATCGAAACCATCCCAAAATCCAAATCCTCCCTAAATCGATCTAGGGCTCCGACGAAGGTAGGGGACGAAGCGGTAGCGGATCGAGGAGGCGAAGCAACCGGCGAAGGGAGGCTGCGAATCCGGCGAAGGGAGGCTGCCAATCTAGCAAAGCAAGGCTGCGAAGCCGGCGAAGTGAGGCGGCAAATCCAGCGAAGCAAGGCTGCGAAGCAACGGGCGAACCTAGGGCCGCGAAGCCGGCGAAGTGAGGCGGCGAAGGAGGCTGCGAAGGTTATCAATTTGACTATGGCTCAGCAACATTTTGTTTGTAGACAAAGGATTAGAGTTGTAATCGCCAAAGCATTTTTGGGCACATTTTGTCATCCCTTATGCTCTGTATTACCGATTGACTTGCAGGATGGGGCTAATGAAAGCAATGCTGAAGTGAGCAAATGCAAGAAGGCCAGGCTAGTATACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.52

Weight (kDa)

10.55

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 355, 498
AccII CGCG 1 cut(s) 277
AciI CCGC 5 cut(s) 119, 125, 226, 275, 296
AclWI GGATC 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 153, 175
AjnI CCWGG 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 1 cut(s) 135
AoxI GGCC 2 cut(s) 272, 486
ApeKI GCWGC 5 cut(s) 160, 182, 204, 248, 308
AspA2I CCTAGG 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 272
AvrII CCTAGG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 97
BbvI GCAGC 5 cut(s) 147, 169, 191, 235, 295
BccI CCATC 2 cut(s) 65, 437
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 5 cut(s) 90, 191, 269, 494, 505
BisI GCNGC 8 cut(s) 161, 183, 205, 227, 249, 275, 297, 309
BlnI CCTAGG 1 cut(s) 268
BlpI GCTNAGC 1 cut(s) 336
BlsI GCNGC 8 cut(s) 162, 184, 206, 228, 250, 276, 298, 310
Bme1390I CCNGG 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 43, 96
BmrFI CCNGG 1 cut(s) 490
Bpu1102I GCTNAGC 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 175
Bse118I RCCGGY 3 cut(s) 146, 212, 282
Bse3DI GCAATG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 3 cut(s) 57, 406, 448
BseLI CCNNNNNNNGG 2 cut(s) 153, 175
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 5 cut(s) 147, 169, 191, 235, 295
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 274, 488
BshVI ATCGAT 1 cut(s) 85
BsiSI CCGG 4 cut(s) 147, 169, 213, 283
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 153, 175
BsmAI GTCTC 1 cut(s) 4
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 2 cut(s) 274, 488
Bsp1286I GDGCHC 2 cut(s) 97, 398
Bsp143I GATC 2 cut(s) 86, 127
Bsp1720I GCTNAGC 1 cut(s) 336
BspACI CCGC 5 cut(s) 119, 125, 226, 275, 296
BspANI GGCC 2 cut(s) 274, 488
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 1 cut(s) 85
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 43, 96
BspPI GGATC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 3 cut(s) 146, 212, 282
BssAI RCCGGY 3 cut(s) 146, 212, 282
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 2 cut(s) 86, 127
BssNAI GTATAC 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 268
Bst1107I GTATAC 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 214, 284
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 57, 406, 448
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 2 cut(s) 89, 130
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 86, 127
BstMWI GCNNNNNNNGC 6 cut(s) 169, 191, 213, 235, 283, 305
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 488
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 5 cut(s) 147, 169, 191, 235, 295
BstZ17I GTATAC 1 cut(s) 499
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 2 cut(s) 274, 488
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 3 cut(s) 57, 406, 448
Cac8I GCNNGC 2 cut(s) 214, 284
Cfr10I RCCGGY 3 cut(s) 146, 212, 282
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 85
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 88, 129
DpnII GATC 2 cut(s) 86, 127
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 268
FaiI YATR 3 cut(s) 332, 415, 499
FaqI GGGAC 1 cut(s) 125
FblI GTMKAC 2 cut(s) 355, 498
Fnu4HI GCNGC 8 cut(s) 161, 183, 205, 227, 249, 275, 297, 309
FokI GGATG 3 cut(s) 44, 393, 455
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 8 cut(s) 161, 183, 205, 227, 249, 275, 297, 309
FspBI CTAG 5 cut(s) 90, 191, 269, 494, 505
GluI GCNGC 8 cut(s) 161, 183, 205, 227, 249, 275, 297, 309
HaeIII GGCC 2 cut(s) 274, 488
HapII CCGG 4 cut(s) 147, 169, 213, 283
HinfI GANTC 2 cut(s) 12, 165
HpaII CCGG 4 cut(s) 147, 169, 213, 283
Hpy166II GTNNAC 2 cut(s) 356, 499
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 2 cut(s) 356, 499
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 6 cut(s) 97, 146, 168, 295, 307, 478
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 439, 480
HpyF10VI GCNNNNNNNGC 6 cut(s) 169, 191, 213, 235, 283, 305
HpyF3I CTNAG 1 cut(s) 336
KroI GCCGGC 2 cut(s) 212, 282
KroNI GCCGGC 2 cut(s) 214, 284
Kzo9I GATC 2 cut(s) 86, 127
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 160, 182, 226, 248, 296, 425, 475, 502
Lsp1109I GCAGC 5 cut(s) 147, 169, 191, 235, 295
MaeI CTAG 5 cut(s) 90, 191, 269, 494, 505
MalI GATC 2 cut(s) 88, 129
MboI GATC 2 cut(s) 86, 127
MhlI GDGCHC 2 cut(s) 97, 398
MluCI AATT 1 cut(s) 322
MlyI GAGTC 1 cut(s) 6
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 8 cut(s) 85, 125, 128, 150, 172, 216, 286, 298
MroNI GCCGGC 2 cut(s) 212, 282
MspI CCGG 4 cut(s) 147, 169, 213, 283
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 6 cut(s) 169, 191, 213, 235, 283, 305
NaeI GCCGGC 2 cut(s) 214, 284
NdeII GATC 2 cut(s) 86, 127
NgoMIV GCCGGC 2 cut(s) 212, 282
NlaIV GGNNCC 2 cut(s) 43, 96
PdiI GCCGGC 2 cut(s) 214, 284
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 8 cut(s) 162, 184, 206, 228, 250, 276, 298, 310
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 2 cut(s) 43, 96
PspPI GGNCC 1 cut(s) 272
SatI GCNGC 8 cut(s) 161, 183, 205, 227, 249, 275, 297, 309
Sau3AI GATC 2 cut(s) 86, 127
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 97, 398
SetI ASST 3 cut(s) 108, 270, 318
Sse9I AATT 1 cut(s) 322
SsiI CCGC 5 cut(s) 119, 125, 226, 275, 296
SspMI CTAG 5 cut(s) 90, 191, 269, 494, 505
StyD4I CCNGG 1 cut(s) 488
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 4 cut(s) 35, 51, 85, 130
TasI AATT 1 cut(s) 322
TauI GCSGC 3 cut(s) 229, 277, 299
TfiI GAWTC 1 cut(s) 165
TseI GCWGC 5 cut(s) 160, 182, 204, 248, 308
TspDTI ATGAA 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmaJI CCTAGG 1 cut(s) 268
XmiI GTMKAC 2 cut(s) 355, 498
XspI CTAG 5 cut(s) 90, 191, 269, 494, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.