Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

29619632 .. 29621284

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGATCAGAAAATGTTTCTCATTGTTACCCTATTTTTCTTGCCATTGTTTGCTGAAGCCACACCGCGCATGCCCCCAACAAAACCGAGTTCCACTAATACCACCACCACCTTATCATCAAACTCATCTTTTAACTTTAGGTACAAAAGCTTGAACCTTAACGATCTTCCCACAGAAATCGACTGGGTAAAAGAAGGACTAGTTACCCCAGTCAAGAACCAACTAGGGTGTGGTAGTTGCTGGGCGTTTGCAGCTGTAGCTGCTGTCGAAGGAATTGCCCAAAGAGCGACCGGCGAATTGAGAGTATTGTCGGAGCAACAACTATTGGACTGCAGTAGAGACTTTGGTACCAATGGCTGCAGGGGAAGTGGTCACAGATTGAAGGCCTTTAATTACATTAAAGAACATGGAGTCGCTTATAGTGACAAGTATCCATACAAAGGTACGGACACGCAAGCATGCGACAACACCACCGTCAGTTATCCAGCAGCCACAATAACTGGCTATGAACGGGTCCCTAATAATGAAATGGATCTGATGAGAGCTGTGGCCAATCAACCAGTCACTGCCTCAGTTTTCACATGTGACGAATTTGATTATTACACAGGTTGGTATATATTTGAGGACCGAGAGGGGAAATGTAATTTTGATATAGATAAGGCGAACCATGCCATTACTATAGTTGGGTACGGGACTGAAAACGGTGTAGATTATTGGAAAATAAAAAATTCATGGGGAGAGGAATGGGGTGACAAGGGTTATATGAAAATGCGAAGGAATGTTGCGACTAAGCCGGAAGGTATTTGCGGAATTGCTAGTGCTCCTATATACCCAACCGATGATATTGCTCCGTCCCGGTCAAACCCCGAAGGTCCAAGTAAGATAGTTGGGGGTCCAGGTCAAACCCCGGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

305

Amino Acids

33.67

Weight (kDa)

5.26

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	56 - 279	2.2e-65	Papain family cysteine protease
Peptidase_C1_2	PF03051	212 - 259	3.3e-06	Peptidase C1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AccII	CGCG	1 cut(s)	67
AciI	CCGC	2 cut(s)	65, 807
AclWI	GGATC	2 cut(s)	12, 540
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	590, 727
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	4 cut(s)	143, 349, 445, 689
AfiI	CCNNNNNNNGG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	154, 382
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	895
AluBI	AGCT	4 cut(s)	150, 254, 260, 545
AluI	AGCT	4 cut(s)	150, 254, 260, 545
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	12, 540
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	384, 549
ApeKI	GCWGC	4 cut(s)	251, 260, 357, 488
ApoI	RAATTY	2 cut(s)	590, 727
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	4 cut(s)	514, 625, 872, 893
AsuC2I	CCSGG	2 cut(s)	856, 908
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	4 cut(s)	514, 625, 872, 893
BaeI	ACNNNNGTAYC	2 cut(s)	331, 364
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	4 cut(s)	247, 263, 344, 500
BcgI	CGANNNNNNTGC	4 cut(s)	257, 291, 827, 861
BciT130I	CCWGG	1 cut(s)	897
BciVI	GTATCC	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	856, 908
BcoDI	GTCTC	1 cut(s)	333
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	3 cut(s)	200, 224, 816
BfmI	CTRYAG	4 cut(s)	255, 331, 358, 678
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	4 cut(s)	252, 261, 358, 489
BlsI	GCNGC	4 cut(s)	253, 262, 359, 490
Bme1390I	CCNGG	3 cut(s)	856, 897, 908
Bme18I	GGWCC	4 cut(s)	514, 625, 872, 893
BmgT120I	GGNCC	4 cut(s)	514, 625, 872, 893
BmiI	GGNNCC	4 cut(s)	349, 515, 516, 894
BmrFI	CCNGG	3 cut(s)	856, 897, 908
BmrI	ACTGGG	2 cut(s)	193, 203
BmuI	ACTGGG	2 cut(s)	193, 203
BpuMI	CCSGG	2 cut(s)	856, 908
BsaJI	CCNNGG	1 cut(s)	906
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	4 cut(s)	188, 209, 505, 560
BseBI	CCWGG	1 cut(s)	897
BseDI	CCNNGG	1 cut(s)	906
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	4 cut(s)	188, 209, 505, 560
BseXI	GCAGC	4 cut(s)	247, 263, 344, 500
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	386, 551
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	823
BsiSI	CCGG	4 cut(s)	291, 794, 856, 908
BslFI	GGGAC	3 cut(s)	500, 706, 838
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	3 cut(s)	500, 706, 838
BsnI	GGCC	2 cut(s)	386, 551
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp143I	GATC	3 cut(s)	4, 163, 532
BspACI	CCGC	2 cut(s)	65, 807
BspANI	GGCC	2 cut(s)	386, 551
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	349, 515, 516, 894
BspMAI	CTGCAG	2 cut(s)	335, 362
BspPI	GGATC	2 cut(s)	12, 540
BspT107I	GGYRCC	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	4 cut(s)	188, 209, 505, 560
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	906
BssMI	GATC	3 cut(s)	4, 163, 532
Bst2UI	CCWGG	1 cut(s)	897
Bst4CI	ACNGT	2 cut(s)	475, 704
BstC8I	GCNNGC	3 cut(s)	71, 456, 460
BstDEI	CTNAG	2 cut(s)	571, 789
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	7, 166, 535
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	4, 163, 532
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 257, 260, 284, 668
BstNI	CCWGG	1 cut(s)	897
BstNSI	RCATGY	3 cut(s)	73, 462, 585
BstSCI	CCNGG	3 cut(s)	854, 895, 906
BstSFI	CTRYAG	4 cut(s)	255, 331, 358, 678
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	247, 263, 344, 500
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	386, 551
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	3 cut(s)	71, 456, 460
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	514, 625, 872, 893
Csp6I	GTAC	4 cut(s)	142, 348, 444, 688
CviAII	CATG	6 cut(s)	70, 407, 459, 582, 668, 732
CviQI	GTAC	4 cut(s)	142, 348, 444, 688
DdeI	CTNAG	2 cut(s)	571, 789
DpnI	GATC	3 cut(s)	6, 165, 534
DpnII	GATC	3 cut(s)	4, 163, 532
EaeI	YGGCCR	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	386
Eco47I	GGWCC	4 cut(s)	514, 625, 872, 893
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	895
FaeI	CATG	6 cut(s)	73, 410, 462, 585, 671, 735
FaqI	GGGAC	3 cut(s)	500, 706, 838
FatI	CATG	6 cut(s)	69, 406, 458, 581, 667, 731
Fnu4HI	GCNGC	4 cut(s)	252, 261, 358, 489
Fsp4HI	GCNGC	4 cut(s)	252, 261, 358, 489
FspBI	CTAG	3 cut(s)	200, 224, 816
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	4 cut(s)	252, 261, 358, 489
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	386, 551
HapII	CCGG	4 cut(s)	291, 794, 856, 908
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	6 cut(s)	73, 410, 462, 585, 671, 735
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	1 cut(s)	411
HpaII	CCGG	4 cut(s)	291, 794, 856, 908
HphI	GGTGA	1 cut(s)	761
Hpy188I	TCNGA	3 cut(s)	9, 313, 537
Hpy188III	TCNNGA	1 cut(s)	214
HpyAV	CCTTC	7 cut(s)	188, 263, 376, 768, 791, 863, 905
HpyCH4III	ACNGT	2 cut(s)	475, 704
HpyCH4V	TGCA	3 cut(s)	251, 333, 360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 257, 260, 284, 668
HpyF3I	CTNAG	2 cut(s)	571, 789
Hsp92II	CATG	6 cut(s)	73, 410, 462, 585, 671, 735
HspAI	GCGC	1 cut(s)	67
KflI	GGGWCCC	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	4, 163, 532
LmnI	GCTCC	3 cut(s)	313, 826, 853
Lsp1109I	GCAGC	4 cut(s)	247, 263, 344, 500
MaeI	CTAG	3 cut(s)	200, 224, 816
MaeIII	GTNAC	7 cut(s)	25, 202, 371, 422, 562, 584, 749
MalI	GATC	3 cut(s)	6, 165, 534
MboI	GATC	3 cut(s)	4, 163, 532
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	823
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	7 cut(s)	273, 296, 391, 590, 643, 727, 810
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	4 cut(s)	580, 616, 625, 733
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	4 cut(s)	132, 159, 390, 399
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	4 cut(s)	291, 794, 856, 908
MspR9I	CCNGG	3 cut(s)	856, 897, 908
MvaI	CCWGG	1 cut(s)	897
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	5 cut(s)	251, 257, 260, 284, 668
NciI	CCSGG	2 cut(s)	856, 908
NdeII	GATC	3 cut(s)	4, 163, 532
NlaIII	CATG	6 cut(s)	73, 410, 462, 585, 671, 735
NlaIV	GGNNCC	4 cut(s)	349, 515, 516, 894
NmuCI	GTSAC	5 cut(s)	371, 422, 562, 584, 749
NspI	RCATGY	3 cut(s)	73, 462, 585
PaeI	GCATGC	2 cut(s)	73, 462
PceI	AGGCCT	1 cut(s)	386
PciI	ACATGT	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	253, 262, 359, 490
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	514
PscI	ACATGT	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	895
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	895
PspN4I	GGNNCC	4 cut(s)	349, 515, 516, 894
PspPI	GGNCC	4 cut(s)	514, 625, 872, 893
PspPPI	RGGWCCY	1 cut(s)	514
PstI	CTGCAG	2 cut(s)	335, 362
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	4 cut(s)	143, 349, 445, 689
RsaNI	GTAC	4 cut(s)	142, 348, 444, 688
SaqAI	TTAA	4 cut(s)	132, 159, 390, 399
SatI	GCNGC	4 cut(s)	252, 261, 358, 489
Sau3AI	GATC	3 cut(s)	4, 163, 532
Sau96I	GGNCC	4 cut(s)	514, 625, 872, 893
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	3 cut(s)	856, 897, 908
SduI	GDGCHC	1 cut(s)	823
SfcI	CTRYAG	4 cut(s)	255, 331, 358, 678
SinI	GGWCC	4 cut(s)	514, 625, 872, 893
SpeI	ACTAGT	1 cut(s)	199
SphI	GCATGC	2 cut(s)	73, 462
Sse9I	AATT	7 cut(s)	273, 296, 391, 590, 643, 727, 810
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	65, 807
SspMI	CTAG	3 cut(s)	200, 224, 816
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	854, 895, 906
TaaI	ACNGT	2 cut(s)	475, 704
TaqI	TCGA	2 cut(s)	180, 267
TaqII	GACCGA	1 cut(s)	642
TasI	AATT	7 cut(s)	273, 296, 391, 590, 643, 727, 810
Tru1I	TTAA	4 cut(s)	132, 159, 390, 399
Tru9I	TTAA	4 cut(s)	132, 159, 390, 399
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	5 cut(s)	371, 422, 562, 584, 749
TseI	GCWGC	4 cut(s)	251, 260, 357, 488
Tsp45I	GTSAC	5 cut(s)	371, 422, 562, 584, 749
TspDTI	ATGAA	4 cut(s)	522, 540, 720, 779
TspGWI	ACGGA	2 cut(s)	461, 840
TspRI	CASTG	1 cut(s)	571
VpaK11BI	GGWCC	4 cut(s)	514, 625, 872, 893
XapI	RAATTY	2 cut(s)	590, 727
XceI	RCATGY	3 cut(s)	73, 462, 585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	200, 224, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.