Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

7344818 .. 7347899

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGAAACTGCTGCTCCGATGACGCCGGCGGCCAGACGGCCGTCGGCGGCACCGCCGCTTCTCACGGCAATCCCAACGACGCTCACAACGACGCCGTCGATCACCTCCTCAAGACCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGTTATCCTTGGCTGCTATAGACTTGCGTGATCGGGACGTGCTCTCGAAGATGCTTAAGCTAGATGAGCAACAATTTCTTGGCGAGGCAACTTGTGCATTGTCGGAGGTGTGGTATAGTGATCATTCTCTAAAAGCTCAAAAATCACTGGCTGACCTGGAAAAGCTTCATACTAGTGGACAAGGAGAAAATTTATTTATACCTGCTGGGCATGATCACCACAACAAGGTAACTATGTTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

130

Amino Acids

14.07

Weight (kDa)

5.44

Isoelectric Point (pI)

16.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	50
AccII	CGCG	1 cut(s)	120
AciI	CCGC	6 cut(s)	30, 48, 54, 57, 118, 120
AcoI	YGGCCR	2 cut(s)	31, 39
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	2 cut(s)	24, 93
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	203
AhlI	ACTAGT	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	3 cut(s)	208, 284, 313
AluI	AGCT	3 cut(s)	208, 284, 313
Alw21I	GWGCWC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	31, 39, 130
ApeKI	GCWGC	2 cut(s)	12, 161
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	95, 356
BanI	GGYRCC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	148
BceAI	ACGGC	5 cut(s)	26, 54, 80, 82, 145
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	268, 361
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	209, 321
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	6 cut(s)	13, 31, 49, 57, 121, 162
BlsI	GCNGC	6 cut(s)	14, 32, 50, 58, 122, 163
Bme1390I	CCNGG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	24, 93
BsaJI	CCNNGG	3 cut(s)	118, 127, 156
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	118, 127, 156
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	98
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	33, 41, 132
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	33, 41, 132
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	100, 144, 178, 268, 361
BspACI	CCGC	6 cut(s)	30, 48, 54, 57, 118, 120
BspANI	GGCC	3 cut(s)	33, 41, 132
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	118, 127, 156
BssMI	GATC	5 cut(s)	100, 144, 178, 268, 361
BssNI	GRCGYC	2 cut(s)	24, 93
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	2 cut(s)	24, 93
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	2 cut(s)	118, 127
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	5 cut(s)	103, 147, 181, 271, 364
BstMBI	GATC	5 cut(s)	100, 144, 178, 268, 361
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 214, 242
BstNI	CCWGG	1 cut(s)	305
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	148
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	33, 41, 132
BtgI	CCRYGG	2 cut(s)	118, 127
BtrI	CACGTC	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	26
Cfr42I	CCGCGG	1 cut(s)	121
CseI	GACGC	3 cut(s)	32, 89, 101
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	33, 41, 123, 132, 161, 208, 284, 299, 313
CviKI_1	RGCY	9 cut(s)	33, 41, 123, 132, 161, 208, 284, 299, 313
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	5 cut(s)	102, 146, 180, 270, 363
DpnII	GATC	5 cut(s)	100, 144, 178, 268, 361
EaeI	YGGCCR	2 cut(s)	31, 39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	362
FaiI	YATR	6 cut(s)	167, 264, 318, 347, 360, 383
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	2 cut(s)	268, 361
Fnu4HI	GCNGC	6 cut(s)	13, 31, 49, 57, 121, 162
Fsp4HI	GCNGC	6 cut(s)	13, 31, 49, 57, 121, 162
FspBI	CTAG	2 cut(s)	209, 321
GluI	GCNGC	6 cut(s)	13, 31, 49, 57, 121, 162
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	33, 41, 132
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	3 cut(s)	32, 89, 101
Hin1I	GRCGYC	2 cut(s)	24, 93
Hin1II	CATG	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	311
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	95, 356
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	4 cut(s)	19, 144, 253, 392
Hpy188III	TCNNGA	3 cut(s)	112, 182, 193
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	4 cut(s)	47, 83, 95, 101
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 214, 242
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	2 cut(s)	24, 93
Hsp92II	CATG	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	2 cut(s)	268, 361
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	100, 144, 178, 268, 361
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	40, 47, 281, 290, 317, 339, 363
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	209, 321
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	5 cut(s)	102, 146, 180, 270, 363
MboI	GATC	5 cut(s)	100, 144, 178, 268, 361
MboII	GAAGA	2 cut(s)	127, 208
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	221, 337
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	116, 119, 143, 226, 247
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	129, 214, 242
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	5 cut(s)	100, 144, 178, 268, 361
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 96
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	312
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	14, 32, 50, 58, 122, 163
PshAI	GACNNNNGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	321
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	6 cut(s)	13, 31, 49, 57, 121, 162
Sau3AI	GATC	5 cut(s)	100, 144, 178, 268, 361
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	9 cut(s)	108, 189, 210, 258, 286, 306, 315, 352, 378
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	165
Sfr303I	CCGCGG	1 cut(s)	121
SgrAI	CRCCGGYG	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	110, 203
SmoI	CTYRAG	2 cut(s)	110, 203
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	2 cut(s)	221, 337
SsiI	CCGC	6 cut(s)	30, 48, 54, 57, 118, 120
SspMI	CTAG	2 cut(s)	209, 321
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	3 cut(s)	99, 147, 194
TasI	AATT	2 cut(s)	221, 337
TauI	GCSGC	4 cut(s)	33, 51, 59, 123
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	12, 161
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	300
Tth111I	GACNNNGTC	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	209, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.