Rh4BG190400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003464
Physical Location & Seq
Reverse (-)
33023553 .. 33027995
4443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG190400.1

Sequence Viewer

Length: 666 bp
ATGCTTCATCCTCCATCGGTCCATCCCTCCAGTCTGCTCCATCCCTGCTCCGCTGCTTTGGTAGATCTGCGATTACAACTAGTCAACGACGCCGTCGATCACCTCAAATCCGGCGGCTACCGCGGCCTCTTCTCTCAGATCAAAGTTCGAGTGCAAGATATTCGGAGGCTTCCCCTTTTCTGCAGTCTTATAGACATTCTTGTGGAACTCCTGGAAGCTGGACGAGGAAGAGCAAACCAAGGAATGGACAGTAGCATCTCTGCGAATAAGTTGTGCCTCATAGCAGTTTTAGCTTGTTCATTCAAAACTCTCAAAACTGAATTGCAAGCTCTTTATGAAACATATAAGAAGAATATTGTGTCCGATGTAGCACCTACGCAATCTGAAAATTTAACTTCTTCTACACCGAGTGCTCCGGGTTCTATAGCATTGCCTATTGTTGGTAATTCCTCAATGCAAAGTTTGAAAAGGGCAAAGCTAGCTGAAGAAAGGAGACTCATTAGGGAAGCACGACCAGATTGGATGGGAAATAGTGAAGATGAAGCTGGAAATGAATCTGATAATGATTCTGTAAATGAGTCTGGTGAACAGGTACCAAGATCAGTTGAATCCCATGAGTTATCAACAAATCTGCAGCCTCAATTTTCAAGGGCTGCAGGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.06

Weight (kDa)

5.97

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 592
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 1 cut(s) 123
AciI CCGC 4 cut(s) 51, 114, 121, 123
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 504
AcyI GRCGYC 1 cut(s) 90
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 2 cut(s) 244, 440
AgsI TTSAA 4 cut(s) 304, 466, 608, 648
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 6 cut(s) 218, 293, 329, 478, 482, 545
AluI AGCT 6 cut(s) 218, 293, 329, 478, 482, 545
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 487
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 53, 634, 653
ApoI RAATTY 1 cut(s) 388
Asp718I GGTACC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 92, 596
AsuNHI GCTAGC 1 cut(s) 478
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 3 cut(s) 40, 640, 646
BccI CCATC 4 cut(s) 22, 30, 48, 517
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 487
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 2 cut(s) 80, 479
BfmI CTRYAG 4 cut(s) 181, 423, 632, 654
BglII AGATCT 1 cut(s) 64
BisI GCNGC 5 cut(s) 54, 115, 124, 635, 654
BlsI GCNGC 5 cut(s) 55, 116, 125, 636, 655
Bme1390I CCNGG 2 cut(s) 212, 417
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 2 cut(s) 212, 417
BmsI GCATC 1 cut(s) 264
BmtI GCTAGC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 121, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 440
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 428
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 121, 238
BseGI GGATG 4 cut(s) 7, 22, 40, 528
BseLI CCNNNNNNNGG 2 cut(s) 244, 440
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 40, 640, 646
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 2 cut(s) 111, 416
BslI CCNNNNNNNGG 2 cut(s) 244, 440
BsmAI GTCTC 1 cut(s) 487
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 4 cut(s) 64, 97, 138, 599
BspACI CCGC 4 cut(s) 51, 114, 121, 123
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 3 cut(s) 185, 636, 658
BspOI GCTAGC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 592
BsrDI GCAATG 1 cut(s) 428
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 121, 238
BssMI GATC 4 cut(s) 64, 97, 138, 599
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 134, 223
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 3 cut(s) 327, 480, 658
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 4 cut(s) 7, 22, 40, 528
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 4 cut(s) 67, 100, 141, 602
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 4 cut(s) 64, 97, 138, 599
BstMWI GCNNNNNNNGC 4 cut(s) 120, 123, 290, 479
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 210, 415
BstSFI CTRYAG 4 cut(s) 181, 423, 632, 654
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 40, 640, 646
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 4 cut(s) 7, 22, 40, 528
Cac8I GCNNGC 3 cut(s) 327, 480, 658
Cfr13I GGNCC 1 cut(s) 19
Cfr42I CCGCGG 1 cut(s) 124
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 593
CviAII CATG 1 cut(s) 614
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 1 cut(s) 135
DpnI GATC 4 cut(s) 66, 99, 140, 601
DpnII GATC 4 cut(s) 64, 97, 138, 599
DraIII CACNNNGTG 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 134, 223
EarI CTCTTC 2 cut(s) 134, 223
Eco130I CCWWGG 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 1 cut(s) 617
FaiI YATR 9 cut(s) 191, 281, 336, 343, 345, 425, 615, 662, 664
FatI CATG 1 cut(s) 613
FauNDI CATATG 1 cut(s) 662
Fnu4HI GCNGC 5 cut(s) 54, 115, 124, 635, 654
FokI GGATG 3 cut(s) 9, 27, 535
Fsp4HI GCNGC 5 cut(s) 54, 115, 124, 635, 654
FspBI CTAG 2 cut(s) 80, 479
GluI GCNGC 5 cut(s) 54, 115, 124, 635, 654
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 111, 416
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 617
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 5 cut(s) 495, 554, 566, 578, 608
HpaII CCGG 2 cut(s) 111, 416
HphI GGTGA 2 cut(s) 92, 596
Hpy166II GTNNAC 2 cut(s) 85, 587
Hpy188I TCNGA 5 cut(s) 138, 165, 364, 385, 559
Hpy8I GTNNAC 2 cut(s) 85, 587
Hpy99I CGWCG 2 cut(s) 92, 98
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 6 cut(s) 154, 183, 325, 457, 634, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 123, 290, 479
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 617
KpnI GGTACC 1 cut(s) 596
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 4 cut(s) 64, 97, 138, 599
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 3 cut(s) 42, 53, 418
Lsp1109I GCAGC 3 cut(s) 40, 640, 646
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 80, 479
MalI GATC 4 cut(s) 66, 99, 140, 601
MboI GATC 4 cut(s) 64, 97, 138, 599
MboII GAAGA 6 cut(s) 121, 240, 361, 390, 497, 548
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 4 cut(s) 320, 388, 445, 641
MlyI GAGTC 2 cut(s) 489, 587
MnlI CCTC 9 cut(s) 21, 37, 113, 137, 159, 218, 287, 460, 648
MseI TTAA 1 cut(s) 392
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 53, 123
MspI CCGG 2 cut(s) 111, 416
MspR9I CCNGG 2 cut(s) 212, 417
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 120, 123, 290, 479
NciI CCSGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 662
NdeII GATC 4 cut(s) 64, 97, 138, 599
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 1 cut(s) 617
NlaIV GGNNCC 1 cut(s) 594
PciSI GCTCTTC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 3 cut(s) 554, 566, 608
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 5 cut(s) 55, 116, 125, 636, 655
PleI GAGTC 2 cut(s) 489, 586
PpsI GAGTC 2 cut(s) 489, 586
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 3 cut(s) 185, 636, 658
PsuI RGATCY 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 1 cut(s) 200
SacII CCGCGG 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 5 cut(s) 54, 115, 124, 635, 654
Sau3AI GATC 4 cut(s) 64, 97, 138, 599
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 2 cut(s) 489, 587
ScrFI CCNGG 2 cut(s) 212, 417
SduI GDGCHC 1 cut(s) 415
SetI ASST 9 cut(s) 105, 220, 295, 331, 376, 480, 484, 547, 594
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 4 cut(s) 181, 423, 632, 654
Sfr303I CCGCGG 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 4 cut(s) 320, 388, 445, 641
SsiI CCGC 4 cut(s) 51, 114, 121, 123
SspI AATATT 1 cut(s) 355
SspMI CTAG 2 cut(s) 80, 479
StyD4I CCNGG 2 cut(s) 210, 415
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 96, 148
TaqII GACCGA 1 cut(s) 7
TasI AATT 4 cut(s) 320, 388, 445, 641
TauI GCSGC 2 cut(s) 117, 126
TfiI GAWTC 3 cut(s) 554, 566, 608
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TseI GCWGC 3 cut(s) 53, 634, 653
TspDTI ATGAA 4 cut(s) 288, 351, 555, 567
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 388
XspI CTAG 2 cut(s) 80, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.