Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

7403262 .. 7411621

Gene Structure 8360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG097300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGAAACTGCTGCTCCGACGACGCCGGCGGCCAGACGGCCGTCGGCGGCACCGCCGCTTCTCACGGCAATCCCAACGACGCTCACAACGACGCCGTCGATCACCTCCTCAAGACCCGCGGCTACCACGGCCTCTTCTCTCAGATCGAGGACTTGAATTCTTTTGAGCCGTTGACTGTTGTTAGAAGCCAATGTAGTCAAAGAGTCGAGGAATTTAAATTAGAAAGAAAAAGAAAAAAGCTTAAAACAACGAACTATTGTACAGTTCACCGGGACAAACCTAAATTGAGACTTCTAGAAAAAAATACCTTTGCTACTGGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

8.75

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccII	CGCG	1 cut(s)	120
AciI	CCGC	6 cut(s)	30, 48, 54, 57, 118, 120
AcoI	YGGCCR	2 cut(s)	31, 39
AcsI	RAATTY	2 cut(s)	157, 212
AcyI	GRCGYC	2 cut(s)	24, 93
AfaI	GTAC	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	283
AoxI	GGCC	3 cut(s)	31, 39, 130
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	157, 212
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	95, 260
BanI	GGYRCC	1 cut(s)	50
BceAI	ACGGC	6 cut(s)	26, 54, 80, 82, 145, 154
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	5 cut(s)	13, 31, 49, 57, 121
BlsI	GCNGC	5 cut(s)	14, 32, 50, 58, 122
Bme1390I	CCNGG	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	272
BoxI	GACNNNNGTC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	24, 93
BsaJI	CCNNGG	2 cut(s)	118, 127
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	118, 127
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	98
BseX3I	CGGCCG	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	33, 41, 132
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	27, 271
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	33, 41, 132
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	100, 144
BspACI	CCGC	6 cut(s)	30, 48, 54, 57, 118, 120
BspANI	GGCC	3 cut(s)	33, 41, 132
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	118, 127
BssMI	GATC	2 cut(s)	100, 144
BssNI	GRCGYC	2 cut(s)	24, 93
Bst4CI	ACNGT	2 cut(s)	178, 265
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	2 cut(s)	24, 93
BstAUI	TGTACA	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	2 cut(s)	118, 127
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	103, 147
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	100, 144
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	120
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	33, 41, 132
BtgI	CCRYGG	2 cut(s)	118, 127
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	26
Cfr42I	CCGCGG	1 cut(s)	121
CseI	GACGC	3 cut(s)	32, 89, 101
Csp6I	GTAC	1 cut(s)	261
CviJI	RGCY	7 cut(s)	33, 41, 123, 132, 169, 189, 241
CviKI_1	RGCY	7 cut(s)	33, 41, 123, 132, 169, 189, 241
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	102, 146
DpnII	GATC	2 cut(s)	100, 144
DraI	TTTAAA	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	31, 39
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	157
FaqI	GGGAC	1 cut(s)	287
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	5 cut(s)	13, 31, 49, 57, 121
Fsp4HI	GCNGC	5 cut(s)	13, 31, 49, 57, 121
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	5 cut(s)	13, 31, 49, 57, 121
HaeIII	GGCC	3 cut(s)	33, 41, 132
HapII	CCGG	2 cut(s)	27, 271
HgaI	GACGC	3 cut(s)	32, 89, 101
Hin1I	GRCGYC	2 cut(s)	24, 93
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	2 cut(s)	27, 271
HphI	GGTGA	2 cut(s)	95, 260
Hpy166II	GTNNAC	2 cut(s)	174, 268
Hpy188I	TCNGA	2 cut(s)	19, 144
Hpy188III	TCNNGA	2 cut(s)	112, 296
Hpy8I	GTNNAC	2 cut(s)	174, 268
Hpy99I	CGWCG	6 cut(s)	23, 26, 47, 83, 95, 101
HpyCH4III	ACNGT	2 cut(s)	178, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	24, 93
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	100, 144
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	40, 47, 284, 303
MaeI	CTAG	1 cut(s)	296
MalI	GATC	2 cut(s)	102, 146
MboI	GATC	2 cut(s)	100, 144
MboII	GAAGA	1 cut(s)	127
MluCI	AATT	4 cut(s)	157, 212, 218, 284
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	116, 119, 142, 143, 202
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	2 cut(s)	216, 243
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	2 cut(s)	27, 271
MspR9I	CCNGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	129
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	100, 144
NgoMIV	GCCGGC	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 96
PdiI	GCCGGC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	5 cut(s)	14, 32, 50, 58, 122
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PshAI	GACNNNNGTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SacII	CCGCGG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	216, 243
SatI	GCNGC	5 cut(s)	13, 31, 49, 57, 121
Sau3AI	GATC	2 cut(s)	100, 144
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	4 cut(s)	108, 243, 283, 311
Sfr303I	CCGCGG	1 cut(s)	121
SgrAI	CRCCGGYG	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	121
SmiI	ATTTAAAT	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	157, 212, 218, 284
SsiI	CCGC	6 cut(s)	30, 48, 54, 57, 118, 120
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	270
SwaI	ATTTAAAT	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	178, 265
TaqI	TCGA	3 cut(s)	99, 147, 207
TasI	AATT	4 cut(s)	157, 212, 218, 284
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	4 cut(s)	33, 51, 59, 123
Tru1I	TTAA	2 cut(s)	216, 243
Tru9I	TTAA	2 cut(s)	216, 243
TseI	GCWGC	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	157, 212
XbaI	TCTAGA	1 cut(s)	295
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.