Rh5CG279300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003464
Physical Location & Seq
Reverse (-)
30455819 .. 30460993
5175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG279300.1

Sequence Viewer

Length: 309 bp
ATGGGCAGCAAACAAAGGCAGGTGTGCAAGTTTGAGATGGAATTGAAGTCGATGATGCTGCAGAAGATGAATGGTTTTGCCGCAGCAGAGTCGTCATCATCATCAACTGGTAATAATCAGGCCAAAACGACGTTGCGTGTGTTTGAGGGTAGAGTGAATCACCAGCCACAGAGAACGACCGTTGATGATGAGAGAAGAAGAATAGAGAAGGCTGAAAATCTGGTTACCGGAGCTCTGAGAGTTGGGGCGGTGGAGTACCCTGAGCGACTGGGCCAGCCTGTGTGCCAGGTATTTGGTTTGTGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

9.25

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 10
AciI CCGC 2 cut(s) 81, 248
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw21I GWGCWC 1 cut(s) 235
AoxI GGCC 2 cut(s) 120, 271
ApeKI GCWGC 3 cut(s) 6, 58, 83
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 3 cut(s) 18, 45, 95
BccI CCATC 1 cut(s) 31
BcgI CGANNNNNNTGC 4 cut(s) 40, 72, 74, 106
BciT130I CCWGG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 59
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 4 cut(s) 7, 59, 81, 84
BlsI GCNGC 4 cut(s) 8, 60, 82, 85
Bme1390I CCNGG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 112, 273
BseBI CCWGG 1 cut(s) 287
BseMII CTCAG 2 cut(s) 227, 252
BseNI ACTGG 2 cut(s) 112, 273
BseXI GCAGC 3 cut(s) 18, 45, 95
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 2 cut(s) 122, 273
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 228
BsnI GGCC 2 cut(s) 122, 273
Bsp1286I GDGCHC 1 cut(s) 235
BspACI CCGC 2 cut(s) 81, 248
BspANI GGCC 2 cut(s) 122, 273
BspCNI CTCAG 2 cut(s) 228, 253
BspMAI CTGCAG 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 112, 273
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 236, 261
BstEII GGTNACC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 180
BstNI CCWGG 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 18, 45, 95
BstXI CCANNNNNNTGG 1 cut(s) 293
BsuRI GGCC 2 cut(s) 122, 273
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 256
CviJI RGCY 6 cut(s) 122, 166, 212, 233, 273, 277
CviKI_1 RGCY 6 cut(s) 122, 166, 212, 233, 273, 277
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 236, 261
Ecl136II GAGCTC 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 233
Eco91I GGTNACC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 235
Fnu4HI GCNGC 4 cut(s) 7, 59, 81, 84
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 7, 59, 81, 84
GluI GCNGC 4 cut(s) 7, 59, 81, 84
HaeIII GGCC 2 cut(s) 122, 273
HapII CCGG 1 cut(s) 228
HinfI GANTC 2 cut(s) 89, 157
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 27, 61
HpyF3I CTNAG 2 cut(s) 236, 261
HpySE526I ACGT 1 cut(s) 131
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 18, 45, 95
LweI GCATC 1 cut(s) 45
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 223, 302
MboII GAAGA 3 cut(s) 76, 207, 210
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 139
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
PaqCI CACCTGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 4 cut(s) 8, 60, 82, 85
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 63
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SacI GAGCTC 1 cut(s) 235
SatI GCNGC 4 cut(s) 7, 59, 81, 84
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 235
SetI ASST 4 cut(s) 24, 134, 235, 291
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 41
SsiI CCGC 2 cut(s) 81, 248
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 41
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 157
TseI GCWGC 3 cut(s) 6, 58, 83
TspDTI ATGAA 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.