Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

16374366 .. 16375662

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007383

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCTACATTGAGTCCATCACTCCTTTACCTCCAGCTCCAAGCTCCATACTCCATCCCTCATCCATTAACCAAACTAAGCAAACTGCTTCAGTCTGCTCCATCCCTCCTCCATCCCTCTTCTACTGCTTCTCACGGGAATTCCAACGACGCCGTCGATCACCTCCTCAAGTCCCGCGGCTACCACAGCCTCTTCTCTCAAATCGAGGTTCGAGCAGGGACTGAAGATACCACAGCCTCTTCTCTCAGATTCAGATCAAGGTTCGAGCAAGGACTAAAGCTACCACGGCCTCTTCTATCAAATCGAGGACGAGGAAGAGCAAACCAAGGAATGGACAGTAGCATCTCTGCGAATAAGTTGTGTCTCATAGCAGTTTTAGCTTGCTCATTAAAAACTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.57

Weight (kDa)

10.17

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	175, 177
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	74, 243
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	37, 44, 280, 380
AluI	AGCT	4 cut(s)	37, 44, 280, 380
Alw26I	GTCTC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	152
BccI	CCATC	4 cut(s)	25, 62, 109, 120
BceAI	ACGGC	2 cut(s)	137, 302
BcoDI	GTCTC	1 cut(s)	368
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmsI	GCATC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	152, 383
BsaBI	GATNNNNATC	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	175, 284, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	175, 284, 325
BseGI	GGATG	4 cut(s)	54, 61, 101, 112
BseJI	GATNNNNATC	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	98, 155
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	289
BslFI	GGGAC	2 cut(s)	157, 232
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	157, 232
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	157, 254
BspACI	CCGC	2 cut(s)	175, 177
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	175, 284, 325
BssMI	GATC	2 cut(s)	157, 254
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	5 cut(s)	124, 197, 244, 297, 310
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	77, 245
BstDSI	CCRYGG	2 cut(s)	175, 284
BstF5I	GGATG	4 cut(s)	54, 61, 101, 112
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	160, 257
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	157, 254
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 286, 377
BstUI	CGCG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	2 cut(s)	175, 284
BtsCI	GGATG	4 cut(s)	54, 61, 101, 112
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	1 cut(s)	158
CviJI	RGCY	8 cut(s)	37, 44, 180, 189, 236, 280, 289, 380
CviKI_1	RGCY	8 cut(s)	37, 44, 180, 189, 236, 280, 289, 380
DdeI	CTNAG	2 cut(s)	77, 245
DpnI	GATC	2 cut(s)	159, 256
DpnII	GATC	2 cut(s)	157, 254
Eam1104I	CTCTTC	5 cut(s)	124, 197, 244, 297, 310
EarI	CTCTTC	5 cut(s)	124, 197, 244, 297, 310
Eco130I	CCWWGG	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	74, 243
EcoRI	GAATTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaiI	YATR	2 cut(s)	49, 368
FaqI	GGGAC	2 cut(s)	157, 232
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	4 cut(s)	41, 48, 88, 99
Fsp4HI	GCNGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	13, 249
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	248, 254
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	152, 158
HpyCH4III	ACNGT	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 286, 377
HpyF3I	CTNAG	2 cut(s)	77, 245
Hsp92I	GRCGYC	1 cut(s)	150
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	157, 254
LguI	GCTCTTC	1 cut(s)	310
LmnI	GCTCC	3 cut(s)	42, 49, 103
LpnPI	CCDG	2 cut(s)	47, 201
LweI	GCATC	1 cut(s)	351
MalI	GATC	2 cut(s)	159, 256
MboI	GATC	2 cut(s)	157, 254
MboII	GAAGA	6 cut(s)	111, 184, 231, 236, 284, 327
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	168
MseI	TTAA	2 cut(s)	68, 389
MspA1I	CMGCKG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	186, 286, 377
NdeII	GATC	2 cut(s)	157, 254
PciSI	GCTCTTC	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	68, 389
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	157, 254
SchI	GAGTC	1 cut(s)	22
SetI	ASST	8 cut(s)	33, 39, 46, 165, 210, 263, 282, 382
SfaNI	GCATC	1 cut(s)	351
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SmlI	CTYRAG	2 cut(s)	167, 398
SmoI	CTYRAG	2 cut(s)	167, 398
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	2 cut(s)	175, 177
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	5 cut(s)	156, 204, 211, 264, 304
TasI	AATT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	68, 389
Tru9I	TTAA	2 cut(s)	68, 389
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.