Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Forward (+)

77227294 .. 77234951

Gene Structure 7658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG491800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTGCATCTTATCACCCACTGAGAAATTTCCCCTGCTGGATCCTGATTCGATACAGATTCGAGTGCAAGCTATTCTGGGGCTTCCCCTTTTCTGCAAGGACACCTCTGAACACATCTCGAAGATTGTAAACGTTCTTGTGCACTGCTTCAAGCTGGTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

54

Amino Acids

6.08

Weight (kDa)

6.69

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
API5	PF05918	9 - 49	2e-10	Apoptosis inhibitory protein 5 (API5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	2 cut(s)	35, 48
AcsI	RAATTY	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	71, 154
AluI	AGCT	2 cut(s)	71, 154
Alw21I	GWGCWC	1 cut(s)	144
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	35, 48
ApaLI	GTGCAC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	2 cut(s)	35, 48
BssMI	GATC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	18, 142
Cac8I	GCNNGC	1 cut(s)	69
CviJI	RGCY	3 cut(s)	71, 82, 154
CviKI_1	RGCY	3 cut(s)	71, 82, 154
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
FaiI	YATR	1 cut(s)	163
HinfI	GANTC	2 cut(s)	47, 58
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	130, 142
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	44, 118
Hpy8I	GTNNAC	2 cut(s)	130, 142
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	6, 67, 96, 142
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	23, 47, 57, 62, 140
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	1 cut(s)	132
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	26
MnlI	CCTC	1 cut(s)	115
NdeII	GATC	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	47, 58
Psp1406I	AACGTT	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	4 cut(s)	73, 107, 135, 156
SfaNI	GCATC	1 cut(s)	15
SgeI	CNNG	9 cut(s)	46, 50, 56, 74, 80, 89, 109, 130, 149
Sse9I	AATT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	50, 61, 119
TasI	AATT	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	47, 58
TscAI	CASTG	2 cut(s)	25, 149
TspRI	CASTG	2 cut(s)	25, 149
VneI	GTGCAC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.