Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

9274205 .. 9282588

Gene Structure 8384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG120700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAACGGCCACACACGGAAGAGCAAGCCTTTCGATGACTCTCACCTTCACACTCTCCAGAGGCAGCGACCAGCTCCTGGTTCTTCTCCTTCTCGCCATTGTCGTCGATCGGTTTTTCACTACAGTCGAACCAAAATGGACATGATCAGTCCTACTATATACATATCTGAACCAAGGAAGGGGGTGGAGTCTGGGGGCAAATTGGTCAAATCAACTAGTCAAAAAACCCTACCGTTGGTTACCGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGATTGGGCCAGCCTGTGTGCCAGGTATTTCGTTTGTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

10.35

Isoelectric Point (pI)

65.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	77
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	7
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	77, 179, 235
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	2 cut(s)	76, 300
AluBI	AGCT	3 cut(s)	74, 248, 257
AluI	AGCT	3 cut(s)	74, 248, 257
Alw21I	GWGCWC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	7, 286
ApeKI	GCWGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	2 cut(s)	78, 302
BclI	TGATCA	1 cut(s)	144
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	78, 302
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	78, 302
BpmI	CTGGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 179, 235
BseBI	CCWGG	2 cut(s)	78, 302
BseDI	CCNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	77, 179, 235
BseMII	CTCAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	257
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	9, 288
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	77, 179, 235
BsnI	GGCC	2 cut(s)	9, 288
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	107, 144
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	9, 288
BspCNI	CTCAG	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	107, 144
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	2 cut(s)	78, 302
Bst4CI	ACNGT	2 cut(s)	125, 234
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	26, 290
BstDEI	CTNAG	1 cut(s)	251
BstEII	GGTNACC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	110, 147
BstMBI	GATC	2 cut(s)	107, 144
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	78, 302
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	76, 300
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	9, 288
Cac8I	GCNNGC	2 cut(s)	26, 290
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	7 cut(s)	9, 28, 74, 248, 257, 288, 292
CviKI_1	RGCY	7 cut(s)	9, 28, 74, 248, 257, 288, 292
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	109, 146
DpnII	GATC	2 cut(s)	107, 144
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	76, 300
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	1 cut(s)	145
FaiI	YATR	4 cut(s)	143, 158, 160, 164
FatI	CATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	65
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	9, 288
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	2 cut(s)	38, 188
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	169, 252
Hpy188III	TCNNGA	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	56, 99, 172
HpyCH4III	ACNGT	2 cut(s)	125, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	107, 144
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	79, 245
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	238, 317
MalI	GATC	2 cut(s)	109, 146
MboI	GATC	2 cut(s)	107, 144
MboII	GAAGA	2 cut(s)	31, 75
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	32, 197
MnlI	CCTC	1 cut(s)	54
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	78, 302
MvaI	CCWGG	2 cut(s)	78, 302
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	107, 144
NlaIII	CATG	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	66
Ple19I	CGATCG	1 cut(s)	110
PleI	GAGTC	2 cut(s)	32, 196
PpsI	GAGTC	2 cut(s)	32, 196
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	76, 300
PspEI	GGTNACC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	76, 300
PspPI	GGNCC	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	107, 144
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	32, 197
ScrFI	CCNGG	2 cut(s)	78, 302
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	5 cut(s)	48, 76, 250, 259, 306
SfcI	CTRYAG	1 cut(s)	121
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	76, 300
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	125, 234
TaqI	TCGA	3 cut(s)	33, 106, 127
TasI	AATT	1 cut(s)	200
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.