Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

30360576 .. 30362304

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG278800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGGGACACAGGACTTCAGACCGGTGACCCAGCTGGTTTCACCCTTGCTGATACCTTGGCATGTGGGATTAGGCAGGTGTGCAAGTTTGAGATGGAATTGAAGTCGATGATGCCGCAGAAGATGAATGGTTTTGCCGCAGCAGAGTCGTCATCATCATCAACTGGTAATAATCAGGCCAAAACGACGTTGCGTATGTTTGGGGGTAGTGTGAATCACCAGCAACAGAGAAAGACCGTTGATGATGAGAGAAGAAGAATAGAGAAGGCTGAAAATCTGGTGCACTTGATTTGCTGGGGACCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

8.57

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	67
AciI	CCGC	2 cut(s)	116, 138
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	177
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	140
AsiGI	ACCGGT	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	34, 38, 209
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	116, 138, 141
BlsI	GCNGC	3 cut(s)	117, 139, 142
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	300, 301
BmsI	GCATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	2 cut(s)	31, 294
BshFI	GGCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	116, 138
BspANI	GGCC	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	300, 301
BspMI	ACCTGC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	238
BstEII	GGTNACC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	66
BstPI	GGTNACC	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	299
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	3 cut(s)	35, 179, 269
CviKI_1	RGCY	3 cut(s)	35, 179, 269
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	66
FaiI	YATR	2 cut(s)	64, 197
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	116, 138, 141
Fsp4HI	GCNGC	3 cut(s)	116, 138, 141
GluI	GCNGC	3 cut(s)	116, 138, 141
GsaI	CCCAGC	2 cut(s)	35, 298
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	66
HinfI	GANTC	2 cut(s)	146, 214
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	3 cut(s)	34, 38, 209
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	84, 283
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	66
KflI	GGGWCCC	1 cut(s)	299
LpnPI	CCDG	9 cut(s)	21, 37, 45, 62, 150, 161, 233, 263, 280
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	133, 264, 267
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	98, 304
MlyI	GAGTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	24
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	2 cut(s)	300, 301
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	66
PaqCI	CACCTGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	214
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	117, 139, 142
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
PspEI	GGTNACC	1 cut(s)	26
PspFI	CCCAGC	2 cut(s)	31, 294
PspN4I	GGNNCC	2 cut(s)	300, 301
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	3 cut(s)	116, 138, 141
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	37, 59, 81, 191
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	1 cut(s)	299
Sse9I	AATT	2 cut(s)	98, 304
SsiI	CCGC	2 cut(s)	116, 138
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	98, 304
TauI	GCSGC	2 cut(s)	118, 140
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.