Rh2BG110900

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003464
Physical Location & Seq
Forward (+)
9376440 .. 9379085
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG110900.1

Sequence Viewer

Length: 477 bp
ATGGTAAATCGATACGAGTCCATTTCGGAGTCCTCCGACTCTGACTCCGACGACGGCCTCGAAGACGAGGAAGAGGACGGCGACGAAGACGACGACTCGGATGACGAGAACGATGACGATGAAGATGACGACGACGATGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCTGGTTCAGTCAATAGACGATGAGGATGACGAAGAAGACGAGGAAGACGCTGAAGGAGGCGATGACGACGACGACGGCGAGGGAGATGACGACGACTGTGAGGGCGAGGATGAGGTTACAGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGATTGGGCCAGCCTGTGTGCCAGTACTCTATGAGGAAGGGGATGTCCAAATTTGGCGCCACTTGTAAGTATCACCATCCTAAGCAGGGAGGAGGCTATGCGGCCCCTTTATCACTAAATTACTATGGATACCCATTACGACCGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

4.05

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 2 cut(s) 311, 428
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 3 cut(s) 153, 320, 353
AfiI CCNNNNNNNGG 1 cut(s) 413
AgeI ACCGGT 1 cut(s) 469
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 296, 305
AluI AGCT 2 cut(s) 296, 305
Alw21I GWGCWC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 55, 166, 334, 429
ApoI RAATTY 1 cut(s) 377
AsiGI ACCGGT 1 cut(s) 469
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 3 cut(s) 167, 334, 430
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 323
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 298
BbsI GAAGAC 4 cut(s) 69, 93, 213, 222
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 1 cut(s) 411
BceAI ACGGC 3 cut(s) 70, 94, 262
BciT130I CCWGG 1 cut(s) 143
BciVI GTATCC 1 cut(s) 449
BfoI RGCGCY 1 cut(s) 387
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 3 cut(s) 167, 334, 430
BmiI GGNNCC 2 cut(s) 385, 432
BmrFI CCNGG 1 cut(s) 143
BpiI GAAGAC 4 cut(s) 69, 93, 213, 222
Bpu10I CCTNAGC 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 384
BsaWI WCCGGW 2 cut(s) 161, 469
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 10
BseGI GGATG 5 cut(s) 106, 202, 286, 375, 403
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 470
BshFI GGCC 4 cut(s) 57, 168, 336, 431
BshNI GGYRCC 1 cut(s) 383
BshTI ACCGGT 1 cut(s) 469
BshVI ATCGAT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 162, 470
BslI CCNNNNNNNGG 1 cut(s) 413
BsnI GGCC 4 cut(s) 57, 168, 336, 431
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 2 cut(s) 311, 428
BspANI GGCC 4 cut(s) 57, 168, 336, 431
BspCNI CTCAG 1 cut(s) 291
BspDI ATCGAT 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 385, 432
BspT107I GGYRCC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 156, 269
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 299, 408
BstF5I GGATG 5 cut(s) 106, 202, 286, 375, 403
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstMCI CGRYCG 1 cut(s) 470
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 4 cut(s) 69, 93, 213, 222
Bsu15I ATCGAT 1 cut(s) 10
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 4 cut(s) 57, 168, 336, 431
BsuTUI ATCGAT 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 5 cut(s) 106, 202, 286, 375, 403
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 167, 334, 430
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 152, 319, 352
CspAI ACCGGT 1 cut(s) 469
CviJI RGCY 8 cut(s) 57, 168, 296, 305, 336, 340, 423, 431
CviKI_1 RGCY 8 cut(s) 57, 168, 296, 305, 336, 340, 423, 431
CviQI GTAC 3 cut(s) 152, 319, 352
DdeI CTNAG 2 cut(s) 299, 408
DinI GGCGCC 1 cut(s) 385
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 298
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
FaiI YATR 4 cut(s) 359, 426, 453, 475
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 5 cut(s) 113, 209, 293, 382, 390
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 429
GlaI GCGC 1 cut(s) 385
GluI GCNGC 1 cut(s) 429
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 4 cut(s) 57, 168, 336, 431
HapII CCGG 2 cut(s) 162, 470
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 5 cut(s) 17, 29, 38, 44, 95
HpaII CCGG 2 cut(s) 162, 470
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 6 cut(s) 28, 37, 43, 49, 100, 300
HpyAV CCTTC 2 cut(s) 218, 358
HpyCH4III ACNGT 2 cut(s) 156, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 299, 408
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 1 cut(s) 384
KasI GGCGCC 1 cut(s) 383
LmnI GCTCC 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 7 cut(s) 74, 83, 98, 134, 215, 218, 227
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 2 cut(s) 377, 445
Mly113I GGCGCC 1 cut(s) 384
MlyI GAGTC 5 cut(s) 26, 32, 38, 38, 89
MmeI TCCRAC 2 cut(s) 60, 72
MspI CCGG 2 cut(s) 162, 470
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 302
NarI GGCGCC 1 cut(s) 384
NlaIV GGNNCC 2 cut(s) 385, 432
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 90, 207, 246
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 469
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 5 cut(s) 25, 32, 37, 38, 89
PluTI GGCGCC 1 cut(s) 387
PpsI GAGTC 5 cut(s) 25, 32, 37, 38, 89
Psp124BI GAGCTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 385, 432
PspPI GGNCC 3 cut(s) 167, 334, 430
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 3 cut(s) 153, 320, 353
RsaNI GTAC 3 cut(s) 152, 319, 352
SacI GAGCTC 1 cut(s) 298
SatI GCNGC 1 cut(s) 429
Sau96I GGNCC 3 cut(s) 167, 334, 430
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 5 cut(s) 26, 32, 38, 38, 89
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 150, 288, 298, 307
SfoI GGCGCC 1 cut(s) 385
Sse9I AATT 2 cut(s) 377, 445
SsiI CCGC 2 cut(s) 311, 428
SspDI GGCGCC 1 cut(s) 383
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 156, 269
TaqI TCGA 2 cut(s) 10, 60
TasI AATT 2 cut(s) 377, 445
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 135
Tth111I GACNNNGTC 1 cut(s) 137
XapI RAATTY 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.