Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

26736690 .. 26758554

Gene Structure 21865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG270600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACAATGGAACTTCAACAAAAAGTCGGATTTACGTTTCTCAGGTTACAGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGATTGGGCCAGCCTGTGTGCCAGTACTCTATGAGGAAGGGGATGTCCAAATTTGGCGCCACTTGTAAGTATCACCATCCTAAGCAGGGAGGAGGCTATGCGGCCCCTTTATCACTAAATTACTATGGATACCCATTACGACCGATGGTTGCTGACATAGATCCAGTGAAGGAGGATGTTGTGGGGGGCGCATGGGACAATGGTGGTGTTCTGGCTGTTGTTCACCATGGCTGGCTAAAGGTGGTTCGCTGTTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

115

Amino Acids

12.46

Weight (kDa)

9.22

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	2 cut(s)	71, 188
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	80, 113
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	2 cut(s)	56, 65
AluI	AGCT	2 cut(s)	56, 65
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	94, 189
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	146, 278
AspS9I	GGNCC	2 cut(s)	94, 190
AsuHPI	GGTGA	2 cut(s)	152, 302
AvaI	CYCGRG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	2 cut(s)	171, 226
BciVI	GTATCC	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	94, 190
BmiI	GGNNCC	2 cut(s)	145, 192
Bpu10I	CCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	109, 251
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	135, 163, 268
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	50, 56
BseNI	ACTGG	2 cut(s)	109, 251
BseRI	GAGGAG	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	96, 191
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	96, 191
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	71, 188
BspANI	GGCC	2 cut(s)	96, 191
BspCNI	CTCAG	2 cut(s)	51, 55
BspLI	GGNNCC	2 cut(s)	145, 192
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	109, 251
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	247
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	98, 320
BstDEI	CTNAG	3 cut(s)	42, 59, 168
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	135, 163, 268
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 278
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	96, 191
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	135, 163, 268
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	98, 320
CfoI	GCGC	2 cut(s)	146, 278
Cfr13I	GGNCC	2 cut(s)	94, 190
Csp6I	GTAC	2 cut(s)	79, 112
CviAII	CATG	2 cut(s)	279, 314
CviJI	RGCY	9 cut(s)	56, 65, 96, 100, 183, 191, 302, 318, 322
CviKI_1	RGCY	9 cut(s)	56, 65, 96, 100, 183, 191, 302, 318, 322
CviQI	GTAC	2 cut(s)	79, 112
DdeI	CTNAG	3 cut(s)	42, 59, 168
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	58
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	282, 317
FaiI	YATR	6 cut(s)	119, 186, 213, 245, 280, 315
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	278, 313
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	142, 150, 275
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	2 cut(s)	145, 277
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	96, 191
HhaI	GCGC	2 cut(s)	146, 278
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	282, 317
Hin6I	GCGC	2 cut(s)	144, 276
HinP1I	GCGC	2 cut(s)	144, 276
HphI	GGTGA	2 cut(s)	152, 302
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	30, 60
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	118, 250
HpyCH4IV	ACGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	3 cut(s)	42, 59, 168
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	282, 317
HspAI	GCGC	2 cut(s)	144, 276
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	137, 205
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	4 cut(s)	114, 170, 173, 253
MwoI	GCNNNNNNNGC	1 cut(s)	62
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	282, 317
NlaIV	GGNNCC	2 cut(s)	145, 192
PkrI	GCNGC	1 cut(s)	190
PluTI	GGCGCC	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	145, 192
PspPI	GGNCC	2 cut(s)	94, 190
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	2 cut(s)	80, 113
RsaNI	GTAC	2 cut(s)	79, 112
SacI	GAGCTC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	94, 190
ScaI	AGTACT	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	5 cut(s)	39, 48, 58, 67, 330
SfoI	GGCGCC	1 cut(s)	145
Sse9I	AATT	2 cut(s)	137, 205
SsiI	CCGC	2 cut(s)	71, 188
SspDI	GGCGCC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	313
TaiI	ACGT	1 cut(s)	39
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	137, 205
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.