Rh2CG113000

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003464
Physical Location & Seq
Forward (+)
9938082 .. 9941102
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG113000.1

Sequence Viewer

Length: 477 bp
ATGGTAAATCGATACGAGTCCATTTCGGAGTCCTCCGACTCTGACTCCGACGACGGCCTCGAAGACGAGGAAGAGGACGGCGACGAAGACGACGACTCGGATGACGAGAACGATGACGATGAAGATGACGACGACGATGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCTGGTTCAGTCAATAGACGATGAGGATGACGAAGAAGACGAGGAAGACGCTGAAGGAGGCGATGACGACGACGACGGCGAGGGAGATGACGACGACTGTGAGGGCGAGGATGAGGTTACAGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGATTGGGCCAGCCTGTGTGCCAGTACTCTATGAGGAAGGGGATGTCCAAATTTGGCGCCACTTGTAAGTATCACCATCCTAAGCAGGGAGGAGGCTATGCGGCCCCTTTATCACTAAATTACTATGGATACCCATTACGACCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

158

Amino Acids

17.3

Weight (kDa)

4.05

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 2 cut(s) 311, 428
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 3 cut(s) 153, 320, 353
AfiI CCNNNNNNNGG 1 cut(s) 413
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 296, 305
AluI AGCT 2 cut(s) 296, 305
Alw21I GWGCWC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 55, 166, 334, 429
ApoI RAATTY 1 cut(s) 377
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 3 cut(s) 167, 334, 430
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 323
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 298
BbsI GAAGAC 4 cut(s) 69, 93, 213, 222
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 1 cut(s) 411
BceAI ACGGC 3 cut(s) 70, 94, 262
BciT130I CCWGG 1 cut(s) 143
BciVI GTATCC 1 cut(s) 449
BfoI RGCGCY 1 cut(s) 387
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 3 cut(s) 167, 334, 430
BmiI GGNNCC 2 cut(s) 385, 432
BmrFI CCNGG 1 cut(s) 143
BpiI GAAGAC 4 cut(s) 69, 93, 213, 222
Bpu10I CCTNAGC 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 10
BseGI GGATG 5 cut(s) 106, 202, 286, 375, 403
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 470
BshFI GGCC 4 cut(s) 57, 168, 336, 431
BshNI GGYRCC 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 413
BsnI GGCC 4 cut(s) 57, 168, 336, 431
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 2 cut(s) 311, 428
BspANI GGCC 4 cut(s) 57, 168, 336, 431
BspCNI CTCAG 1 cut(s) 291
BspDI ATCGAT 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 385, 432
BspT107I GGYRCC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 349
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 156, 269
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 299, 408
BstF5I GGATG 5 cut(s) 106, 202, 286, 375, 403
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstMCI CGRYCG 1 cut(s) 470
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 4 cut(s) 69, 93, 213, 222
Bsu15I ATCGAT 1 cut(s) 10
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 4 cut(s) 57, 168, 336, 431
BsuTUI ATCGAT 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 5 cut(s) 106, 202, 286, 375, 403
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 3 cut(s) 167, 334, 430
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 152, 319, 352
CviJI RGCY 8 cut(s) 57, 168, 296, 305, 336, 340, 423, 431
CviKI_1 RGCY 8 cut(s) 57, 168, 296, 305, 336, 340, 423, 431
CviQI GTAC 3 cut(s) 152, 319, 352
DdeI CTNAG 2 cut(s) 299, 408
DinI GGCGCC 1 cut(s) 385
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 298
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
FaiI YATR 3 cut(s) 359, 426, 453
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 5 cut(s) 113, 209, 293, 382, 390
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 429
GlaI GCGC 1 cut(s) 385
GluI GCNGC 1 cut(s) 429
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 4 cut(s) 57, 168, 336, 431
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 5 cut(s) 17, 29, 38, 44, 95
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 6 cut(s) 28, 37, 43, 49, 100, 300
HpyAV CCTTC 2 cut(s) 218, 358
HpyCH4III ACNGT 2 cut(s) 156, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 299, 408
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 1 cut(s) 384
KasI GGCGCC 1 cut(s) 383
LmnI GCTCC 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 7 cut(s) 74, 83, 98, 134, 215, 218, 227
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 377, 445, 472
Mly113I GGCGCC 1 cut(s) 384
MlyI GAGTC 5 cut(s) 26, 32, 38, 38, 89
MmeI TCCRAC 2 cut(s) 60, 72
MseI TTAA 1 cut(s) 475
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 302
NarI GGCGCC 1 cut(s) 384
NlaIV GGNNCC 2 cut(s) 385, 432
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 90, 207, 246
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 5 cut(s) 25, 32, 37, 38, 89
PluTI GGCGCC 1 cut(s) 387
PpsI GAGTC 5 cut(s) 25, 32, 37, 38, 89
Psp124BI GAGCTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 385, 432
PspPI GGNCC 3 cut(s) 167, 334, 430
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 3 cut(s) 153, 320, 353
RsaNI GTAC 3 cut(s) 152, 319, 352
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 475
SatI GCNGC 1 cut(s) 429
Sau96I GGNCC 3 cut(s) 167, 334, 430
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 5 cut(s) 26, 32, 38, 38, 89
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 150, 288, 298, 307
SfoI GGCGCC 1 cut(s) 385
Sse9I AATT 3 cut(s) 377, 445, 472
SsiI CCGC 2 cut(s) 311, 428
SspDI GGCGCC 1 cut(s) 383
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 156, 269
TaqI TCGA 2 cut(s) 10, 60
TasI AATT 3 cut(s) 377, 445, 472
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 475
Tru9I TTAA 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 135
Tth111I GACNNNGTC 1 cut(s) 137
XapI RAATTY 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.