Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

32878908 .. 32885493

Gene Structure 6586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCGGTGCTTTGTAAGCGGTCACGGGGAAAGGCGAACGGTCGAGGGAGAAGACGCGCTCGGGTGGGAGAATGCGAGCGCAGGCGGGAGAAGGCGAGCGCGGGCTGGAAAAGGTGAGCGCGCTCGGGAGAAGGCAAGCCAGCTCGGAGAAGGCCAGCCCGCTCGGGAGAAGGCGAGCGAGCGCGGGAGAAGGCGAGCGCCCGCGGGAGAAGGCCGGAGGGAAAGGGAGAAGGCGAGCGCGCGCCGGAGAAGGCGAGCGAGCAAGGGAGAAGGCGAGCGCGCGCGGGTGAAGACGAACACGTGTGAGAGAAGACGAGCCATGCGGGTGCGCAGGCTCTCCGTAGCAGGACTCGACAAGTGCACTCACGGGGCTCGGCAGCCTTCTCTCGGGGCTCTCGGGGGCAGGATTATCCGACTACCGCTCCAAGGTCCATACTCCATCCCTCATCCGCTAACCAAACTAAGCAACTGCTCCACCGCTCAATCCCTCCTCCATCCCTCTTTTGCTGCTTCTCACGGCAATCCCAACGACGCTCACAACGATGTCGTCAATCACCTCCTCAAGTCCCGCGGCTACCACGGCCTATTCTCTCGGATTGAGGTTCAAGAGGACCGAAATGACTTCGGACGAGGAAGAGCAAACCAAGGAATGGACAGTAGCATCTCTGGGAATAAGTTGTGTCTCAAAGCAGTTTTAGCTTGCTCATTTAAAACTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005544 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0008289 GO:0008361 GO:0009266 GO:0009270 GO:0009415 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0016020 GO:0016043 GO:0030054 GO:0032535 GO:0042221 GO:0043167 GO:0043168 GO:0044464 GO:0045793 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0060548 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine Dev_Cell_Death

Protein Analysis

240

Amino Acids

26.39

Weight (kDa)

11.26

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	649
AccBSI	CCGCTC	3 cut(s)	161, 421, 479
AcvI	CACGTG	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	386, 425, 649
AflIII	ACRYGT	2 cut(s)	297, 299
AgsI	TTSAA	1 cut(s)	605
AluBI	AGCT	2 cut(s)	142, 698
AluI	AGCT	2 cut(s)	142, 698
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	686
Alw44I	GTGCAC	1 cut(s)	358
Ama87I	CYCGRG	5 cut(s)	59, 123, 162, 386, 395
AoxI	GGCC	3 cut(s)	151, 211, 580
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	376, 506
AspS9I	GGNCC	2 cut(s)	428, 610
AsuHPI	GGTGA	3 cut(s)	125, 298, 545
AvaI	CYCGRG	5 cut(s)	59, 123, 162, 386, 395
AvaII	GGWCC	2 cut(s)	428, 610
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	373, 394
BbrPI	CACGTG	1 cut(s)	300
BbsI	GAAGAC	3 cut(s)	57, 296, 316
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	388, 493
BccI	CCATC	2 cut(s)	446, 501
BceAI	ACGGC	2 cut(s)	532, 595
BcoDI	GTCTC	1 cut(s)	686
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	3 cut(s)	377, 507, 571
BlsI	GCNGC	3 cut(s)	378, 508, 572
Bme18I	GGWCC	2 cut(s)	428, 610
BmeT110I	CYCGRG	5 cut(s)	59, 123, 162, 386, 395
BmgT120I	GGNCC	2 cut(s)	428, 610
BmsI	GCATC	1 cut(s)	669
BpiI	GAAGAC	3 cut(s)	57, 296, 316
BpuEI	CTTGAG	2 cut(s)	545, 701
BsaAI	YACGTR	1 cut(s)	300
BsaJI	CCNNGG	5 cut(s)	201, 424, 568, 577, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 425, 649
BseDI	CCNNGG	5 cut(s)	201, 424, 568, 577, 643
BseGI	GGATG	3 cut(s)	438, 445, 493
BseLI	CCNNNNNNNGG	3 cut(s)	386, 425, 649
BsePI	GCGCGC	5 cut(s)	118, 237, 239, 277, 279
BseRI	GAGGAG	2 cut(s)	479, 548
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	388, 493
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	153, 213, 582
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	5 cut(s)	59, 123, 162, 386, 395
BsiSI	CCGG	2 cut(s)	214, 244
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	3 cut(s)	386, 425, 649
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	153, 213, 582
BsoBI	CYCGRG	5 cut(s)	59, 123, 162, 386, 395
Bsp1286I	GDGCHC	3 cut(s)	362, 373, 394
BspANI	GGCC	3 cut(s)	153, 213, 582
BspQI	GCTCTTC	1 cut(s)	628
BsrBI	CCGCTC	3 cut(s)	161, 421, 479
BssECI	CCNNGG	5 cut(s)	201, 424, 568, 577, 643
BssHII	GCGCGC	5 cut(s)	118, 237, 239, 277, 279
BssT1I	CCWWGG	2 cut(s)	424, 643
Bst4CI	ACNGT	2 cut(s)	40, 656
Bst6I	CTCTTC	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	461
BstDSI	CCRYGG	3 cut(s)	201, 568, 577
BstF5I	GGATG	3 cut(s)	438, 445, 493
BstH2I	RGCGCY	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	686
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 579, 695
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	388, 493
BstV2I	GAAGAC	3 cut(s)	57, 296, 316
BsuRI	GGCC	3 cut(s)	153, 213, 582
BtgI	CCRYGG	3 cut(s)	201, 568, 577
BtsCI	GGATG	3 cut(s)	438, 445, 493
Cfr13I	GGNCC	2 cut(s)	428, 610
Cfr42I	CCGCGG	2 cut(s)	204, 571
CseI	GACGC	2 cut(s)	62, 539
CviAII	CATG	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	461
DraI	TTTAAA	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	628
EarI	CTCTTC	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	424, 643
Eco24I	GRGCYC	2 cut(s)	373, 394
Eco47I	GGWCC	2 cut(s)	428, 610
Eco72I	CACGTG	1 cut(s)	300
Eco88I	CYCGRG	5 cut(s)	59, 123, 162, 386, 395
EcoT14I	CCWWGG	2 cut(s)	424, 643
EcoT38I	GRGCYC	2 cut(s)	373, 394
ErhI	CCWWGG	2 cut(s)	424, 643
FaeI	CATG	1 cut(s)	322
FaiI	YATR	2 cut(s)	320, 433
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	1 cut(s)	318
FauI	CCCGC	9 cut(s)	77, 93, 166, 176, 196, 208, 276, 315, 575
Fnu4HI	GCNGC	3 cut(s)	377, 507, 571
FokI	GGATG	3 cut(s)	425, 432, 480
FriOI	GRGCYC	2 cut(s)	373, 394
Fsp4HI	GCNGC	3 cut(s)	377, 507, 571
FspI	TGCGCA	1 cut(s)	329
GluI	GCNGC	3 cut(s)	377, 507, 571
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	153, 213, 582
HapII	CCGG	2 cut(s)	214, 244
HgaI	GACGC	2 cut(s)	62, 539
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	2 cut(s)	214, 244
HphI	GGTGA	3 cut(s)	125, 298, 545
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	4 cut(s)	146, 413, 594, 626
Hpy188III	TCNNGA	3 cut(s)	125, 164, 605
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	40, 656
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 579, 695
HpyF3I	CTNAG	1 cut(s)	461
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	322
KspI	CCGCGG	2 cut(s)	204, 571
LguI	GCTCTTC	1 cut(s)	628
LmnI	GCTCC	2 cut(s)	426, 476
Lsp1109I	GCAGC	2 cut(s)	388, 493
LweI	GCATC	1 cut(s)	669
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	20
MauBI	CGCGCGCG	1 cut(s)	279
MbiI	CCGCTC	3 cut(s)	161, 421, 479
MboII	GAAGA	4 cut(s)	62, 301, 321, 645
MhlI	GDGCHC	3 cut(s)	362, 373, 394
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	436
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	2 cut(s)	323, 540
MspA1I	CMGCKG	2 cut(s)	203, 570
MspI	CCGG	2 cut(s)	214, 244
Mva1269I	GAATGC	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	15, 579, 695
NlaIII	CATG	1 cut(s)	322
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	20
NsbI	TGCGCA	1 cut(s)	329
PauI	GCGCGC	5 cut(s)	118, 237, 239, 277, 279
PciSI	GCTCTTC	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PctI	GAATGC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	378, 508, 572
PleI	GAGTC	1 cut(s)	342
PmaCI	CACGTG	1 cut(s)	300
PmlI	CACGTG	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	342
Ppu21I	YACGTR	1 cut(s)	300
PspCI	CACGTG	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	428, 610
PteI	GCGCGC	5 cut(s)	118, 237, 239, 277, 279
RseI	CAYNNNNRTG	2 cut(s)	323, 540
SacII	CCGCGG	2 cut(s)	204, 571
SapI	GCTCTTC	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	3 cut(s)	377, 507, 571
Sau96I	GGNCC	2 cut(s)	428, 610
SchI	GAGTC	1 cut(s)	342
SduI	GDGCHC	3 cut(s)	362, 373, 394
SetI	ASST	7 cut(s)	115, 144, 302, 430, 558, 603, 700
SfaNI	GCATC	1 cut(s)	669
Sfr303I	CCGCGG	2 cut(s)	204, 571
SgrBI	CCGCGG	2 cut(s)	204, 571
SinI	GGWCC	2 cut(s)	428, 610
SmiMI	CAYNNNNRTG	2 cut(s)	323, 540
SmlI	CTYRAG	2 cut(s)	560, 716
SmoI	CTYRAG	2 cut(s)	560, 716
StyI	CCWWGG	2 cut(s)	424, 643
TaaI	ACNGT	2 cut(s)	40, 656
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	42, 351
TaqII	GACCGA	1 cut(s)	627
TauI	GCSGC	1 cut(s)	573
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	376, 506
Tsp45I	GTSAC	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	428, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.