Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003464

Physical Location & Seq

Genomic Coordinates Reverse (-)

30655616 .. 30656546

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG281300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCAAGAAGCTCAGCGTGAAATGCAGCTAGCTGAAGAAAGGAGGCTCATTAGGGAAGGACGACCAGATTGGATGGAAAATAGTGAAGATGAAGCTGGAAATGAAGCTGAAAATGAATCTGATAATGATTCTGAAAATGAGTCCCATGAACAGGTACCAAGATCAGCTGAATCCCATGAGTTATCAACCAATCTGCAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

67

Amino Acids

7.8

Weight (kDa)

4.2

Isoelectric Point (pI)

63.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003464)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21121
prunus_persica	Prupe.4G191700_v2.0.a1
pyrus_communis	pycom11g20700
rosa_chinensis	RchiOBHm_Chr5g0036141 RchiOBHm_Chr5g0036171
rosa_laevigata	RLG00000007383
rosa_roxburghii	Rroxscaffold_2G00108780 Rroxscaffold_5G00381270
rosa_rugosa	Rorug04G0455500 Rorug05G0152700 Rorug05G0153300 Rorug05G0262000 Rorug05G0547000
rosa_samantha	Rh1AG184900 Rh1BG274500 Rh2BG110900 Rh2CG113000 Rh2CG408500 Rh4BG024500 Rh4BG176900 Rh4BG190400 Rh4CG169700 Rh5AG247400 Rh5BG394000 Rh5CG278800 Rh5CG279300 Rh5CG281300 Rh5CG472600 Rh5DG256200 Rh5DG256400 Rh5DG463700 Rh5DG491800 Rh7AG097300 Rh7BG099100 Rh7CG120700 Rh7CG270600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	151
AluBI	AGCT	6 cut(s)	11, 28, 32, 95, 107, 167
AluI	AGCT	6 cut(s)	11, 28, 32, 95, 107, 167
ApeKI	GCWGC	2 cut(s)	25, 196
Asp718I	GGTACC	1 cut(s)	154
AsuNHI	GCTAGC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	26, 197
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	2 cut(s)	27, 198
BmiI	GGNNCC	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	161
Bsp1720I	GCTNAGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	154
BssMI	GATC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	146, 176
CviJI	RGCY	8 cut(s)	11, 28, 32, 46, 95, 107, 167, 199
CviKI_1	RGCY	8 cut(s)	11, 28, 32, 46, 95, 107, 167, 199
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	54
FaeI	CATG	2 cut(s)	149, 179
FaiI	YATR	2 cut(s)	147, 177
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	145, 175
Fnu4HI	GCNGC	2 cut(s)	26, 197
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	26, 197
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	26, 197
Hin1II	CATG	2 cut(s)	149, 179
HinfI	GANTC	4 cut(s)	116, 128, 140, 170
Hpy188I	TCNGA	2 cut(s)	121, 133
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	4, 25, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	149, 179
KpnI	GGTACC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	161
LpnPI	CCDG	3 cut(s)	78, 81, 137
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	29
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	47, 98
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	1 cut(s)	161
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	149, 179
NlaIV	GGNNCC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	116, 128, 170
PkrI	GCNGC	2 cut(s)	27, 198
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	202
SatI	GCNGC	2 cut(s)	26, 197
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	149
SetI	ASST	7 cut(s)	13, 30, 34, 97, 109, 156, 169
SfcI	CTRYAG	1 cut(s)	194
SgeI	CNNG	9 cut(s)	17, 29, 41, 77, 108, 158, 164, 171, 188
SspMI	CTAG	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	116, 128, 170
Tru1I	TTAA	1 cut(s)	202
Tru9I	TTAA	1 cut(s)	202
TseI	GCWGC	2 cut(s)	25, 196
TspDTI	ATGAA	4 cut(s)	105, 117, 129, 162
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.