pycom11g26360

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002523
Physical Location & Seq
Forward (+)
28934349 .. 28936317
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
ATGAGATTTTTGGACGCCGTCGACGGCAAAGGAGGACTCTTGGGTAAGGTTGTTTCAATGGAGGATGCACAAGAAGTATCTGATACAATGTCAGACAAAGCTTCTGAGAATACGCAGGAAACTCGCGATGAAATGCTTTCTAGGCACAGGAAAGAGATATCAAAACTTCAGGACAAGGAAACTGGAATGAAAAAGGCAGCTGCCAAAGGGAGCAAGGCTGAACAAAAAACTAAGAAAAAGCAGGTGGAGGAAGAGATTACTCAGCTTTCTGCTAATCTCAAAGAAAAACAGGCCGCAGAACTTGCTTCCTTAGGCTATAGCGCTAGTAACGGAAATGAGAAGAACAAACTCGACACTTTAGTCAAGGCTATAGCTGGTGTTTCTGTCACCAGTCAACCTGAACATGCAAAGCCCAGCAAGAGTTCAAAGAGGCGAGAAAAGAGGGCTCAGCAAGATGCAGCTAGGGAGCAAAGAATTCAAGAAGAGCAGAGCAACCTAGTAAGTGATCGAGTGATTGAGGATGAGAAACTAGAGAAAAAGCTCGAACCCTTTGGCTTGACCATTAAAGAAATAAAGCCCGATGGACATTGCCTCTACCGAGCTATCCAGGATCAGCTGGCCCACCTTTCAGGAGGTTCATCACCTTACACGTACCAACAGCTTCGAGAAATGGTGGCTGCTTATATGAGGAAGCATGCATCTGATTTTCTCCCATTTTTCTTATCGGAGAATCCGGCAGATGGAGATTCTGATGATTCACTTGCAGCGAGGTTTGAGAACTACTGTAAAGAAGTGGAGTCAACAGCAGCATGGGGGGGACAGCTAGAGCTTGGTGCCTTAACTCACTGCCTCAAAAAGCCTATCAAGATATACTCAGGATCGATCCCTGATGTGGAGATGGGCAAGGAGTACAAATCCGATAGCGCGACTGGTTCTTCCGATTCGCGGATTATGTTGTCATACCATAAGCATGCATTTGGGCTTGGTGAGCACTATAATTCTGTAGTTCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

339

Amino Acids

37.48

Weight (kDa)

6.35

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 192 - 332 1.6e-34 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
AasI GACNNNNNNGTC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 833
AccI GTMKAC 1 cut(s) 21
AccII CGCG 3 cut(s) 126, 926, 946
AciI CCGC 2 cut(s) 294, 946
AclWI GGATC 3 cut(s) 618, 877, 886
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 653, 911
AfeI AGCGCT 1 cut(s) 322
AfiI CCNNNNNNNGG 3 cut(s) 740, 892, 945
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 3 cut(s) 57, 426, 479
AjnI CCWGG 1 cut(s) 606
Alw21I GWGCWC 1 cut(s) 993
AlwI GGATC 3 cut(s) 618, 877, 886
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 2 cut(s) 291, 618
ApeKI GCWGC 6 cut(s) 197, 200, 458, 677, 764, 806
ApoI RAATTY 1 cut(s) 474
AspLEI GCGC 2 cut(s) 323, 926
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 3 cut(s) 379, 633, 998
AxyI CCTNAGG 1 cut(s) 310
BanI GGYRCC 1 cut(s) 833
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 6 cut(s) 187, 209, 470, 664, 776, 818
BccI CCATC 3 cut(s) 575, 734, 892
BceAI ACGGC 2 cut(s) 2, 40
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 608
BfaI CTAG 6 cut(s) 141, 324, 462, 497, 530, 824
BfmI CTRYAG 3 cut(s) 316, 369, 1002
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 7 cut(s) 198, 201, 294, 459, 678, 765, 807
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 7 cut(s) 199, 202, 295, 460, 679, 766, 808
Bme1390I CCNGG 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 835
BmrFI CCNGG 1 cut(s) 608
BmsI GCATC 3 cut(s) 55, 445, 707
Bpu1102I GCTNAGC 1 cut(s) 447
Bsa29I ATCGAT 1 cut(s) 881
BsaAI YACGTR 1 cut(s) 651
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 892, 945
Bse1I ACTGG 3 cut(s) 187, 390, 934
Bse21I CCTNAGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 1 cut(s) 608
BseCI ATCGAT 1 cut(s) 881
BseGI GGATG 2 cut(s) 70, 526
BseLI CCNNNNNNNGG 3 cut(s) 740, 892, 945
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 4 cut(s) 96, 275, 461, 888
BseNI ACTGG 3 cut(s) 187, 390, 934
BseXI GCAGC 6 cut(s) 187, 209, 470, 664, 776, 818
BseYI CCCAGC 1 cut(s) 413
Bsh1236I CGCG 3 cut(s) 126, 926, 946
BshFI GGCC 2 cut(s) 293, 620
BshNI GGYRCC 1 cut(s) 833
BshVI ATCGAT 1 cut(s) 881
BsiHKAI GWGCWC 1 cut(s) 993
BsiSI CCGG 1 cut(s) 734
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 3 cut(s) 740, 892, 945
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 2 cut(s) 293, 620
Bsp1286I GDGCHC 2 cut(s) 448, 993
Bsp143I GATC 4 cut(s) 505, 610, 878, 882
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp68I TCGCGA 1 cut(s) 126
BspACI CCGC 2 cut(s) 294, 946
BspANI GGCC 2 cut(s) 293, 620
BspCNI CTCAG 4 cut(s) 97, 274, 460, 887
BspDI ATCGAT 1 cut(s) 881
BspFNI CGCG 3 cut(s) 126, 926, 946
BspLI GGNNCC 1 cut(s) 835
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 3 cut(s) 618, 877, 886
BspQI GCTCTTC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 833
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 3 cut(s) 187, 390, 934
BssMI GATC 4 cut(s) 505, 610, 878, 882
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 785
Bst6I CTCTTC 2 cut(s) 246, 477
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 618, 696, 972
BstDEI CTNAG 6 cut(s) 105, 231, 261, 310, 447, 874
BstF5I GGATG 2 cut(s) 70, 526
BstFNI CGCG 3 cut(s) 126, 926, 946
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 2 cut(s) 323, 926
BstKTI GATC 4 cut(s) 508, 613, 881, 885
BstMBI GATC 4 cut(s) 505, 610, 878, 882
BstMWI GCNNNNNNNGC 3 cut(s) 142, 302, 988
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 3 cut(s) 407, 698, 974
BstSCI CCNGG 1 cut(s) 606
BstSFI CTRYAG 3 cut(s) 316, 369, 1002
BstUI CGCG 3 cut(s) 126, 926, 946
BstV1I GCAGC 6 cut(s) 187, 209, 470, 664, 776, 818
Bsu15I ATCGAT 1 cut(s) 881
Bsu36I CCTNAGG 1 cut(s) 310
BsuRI GGCC 2 cut(s) 293, 620
BsuTUI ATCGAT 1 cut(s) 881
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 70, 526
BtsI GCAGTG 1 cut(s) 844
BtsIMutI CAGTG 1 cut(s) 844
BtuMI TCGCGA 1 cut(s) 126
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 3 cut(s) 618, 696, 972
CfoI GCGC 2 cut(s) 323, 926
Cfr13I GGNCC 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 881
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 652, 910
CviAII CATG 4 cut(s) 404, 695, 810, 971
CviQI GTAC 2 cut(s) 652, 910
DdeI CTNAG 6 cut(s) 105, 231, 261, 310, 447, 874
DpnI GATC 4 cut(s) 507, 612, 880, 884
DpnII GATC 4 cut(s) 505, 610, 878, 882
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 246, 477
EarI CTCTTC 2 cut(s) 246, 477
Eco24I GRGCYC 1 cut(s) 448
Eco32I GATATC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 310
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 606
EcoRV GATATC 1 cut(s) 159
EcoT22I ATGCAT 2 cut(s) 700, 976
EcoT38I GRGCYC 1 cut(s) 448
FaeI CATG 4 cut(s) 407, 698, 813, 974
FaqI GGGAC 1 cut(s) 831
FatI CATG 4 cut(s) 403, 694, 809, 970
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 7 cut(s) 198, 201, 294, 459, 678, 765, 807
FokI GGATG 2 cut(s) 77, 533
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 7 cut(s) 198, 201, 294, 459, 678, 765, 807
FspBI CTAG 6 cut(s) 141, 324, 462, 497, 530, 824
GlaI GCGC 2 cut(s) 322, 925
GluI GCNGC 7 cut(s) 198, 201, 294, 459, 678, 765, 807
GsaI CCCAGC 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 293, 620
HapII CCGG 1 cut(s) 734
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 323, 926
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 4 cut(s) 407, 698, 813, 974
Hin6I GCGC 2 cut(s) 321, 924
HinP1I GCGC 2 cut(s) 321, 924
HincII GTYRAC 3 cut(s) 22, 395, 801
HindII GTYRAC 3 cut(s) 22, 395, 801
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 6 cut(s) 36, 730, 746, 755, 797, 941
HpaII CCGG 1 cut(s) 734
HphI GGTGA 3 cut(s) 379, 633, 998
Hpy166II GTNNAC 3 cut(s) 22, 395, 801
Hpy188I TCNGA 8 cut(s) 82, 94, 106, 703, 727, 751, 919, 940
Hpy188III TCNNGA 7 cut(s) 125, 170, 479, 630, 665, 865, 876
Hpy8I GTNNAC 3 cut(s) 22, 395, 801
Hpy99I CGWCG 2 cut(s) 23, 26
HpyCH4III ACNGT 1 cut(s) 785
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 6 cut(s) 68, 407, 458, 698, 764, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 302, 988
HpyF3I CTNAG 6 cut(s) 105, 231, 261, 310, 447, 874
HpySE526I ACGT 1 cut(s) 650
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 4 cut(s) 407, 698, 813, 974
HspAI GCGC 2 cut(s) 321, 924
Kzo9I GATC 4 cut(s) 505, 610, 878, 882
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 2 cut(s) 210, 466
Lsp1109I GCAGC 6 cut(s) 187, 209, 470, 664, 776, 818
LweI GCATC 3 cut(s) 55, 445, 707
MaeI CTAG 6 cut(s) 141, 324, 462, 497, 530, 824
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 2 cut(s) 326, 385
MalI GATC 4 cut(s) 507, 612, 880, 884
MboI GATC 4 cut(s) 505, 610, 878, 882
MboII GAAGA 4 cut(s) 263, 352, 494, 927
MhlI GDGCHC 2 cut(s) 448, 993
MluCI AATT 2 cut(s) 474, 997
MlyI GAGTC 2 cut(s) 30, 806
Mph1103I ATGCAT 2 cut(s) 700, 976
MseI TTAA 2 cut(s) 564, 839
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 2 cut(s) 200, 616
MspI CCGG 1 cut(s) 734
MspR9I CCNGG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 3 cut(s) 126, 926, 946
MwoI GCNNNNNNNGC 3 cut(s) 142, 302, 988
NdeII GATC 4 cut(s) 505, 610, 878, 882
NlaIII CATG 4 cut(s) 407, 698, 813, 974
NlaIV GGNNCC 1 cut(s) 835
NmuCI GTSAC 1 cut(s) 385
NruI TCGCGA 1 cut(s) 126
NsiI ATGCAT 2 cut(s) 700, 976
NspI RCATGY 3 cut(s) 407, 698, 974
PaeI GCATGC 2 cut(s) 698, 974
PaqCI CACCTGC 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 730, 746, 755, 941
PflFI GACNNNGTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 606
PkrI GCNGC 7 cut(s) 199, 202, 295, 460, 679, 766, 808
PleI GAGTC 2 cut(s) 30, 805
PpsI GAGTC 2 cut(s) 30, 805
Ppu21I YACGTR 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 606
PspFI CCCAGC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 1 cut(s) 835
PspPI GGNCC 1 cut(s) 619
PsyI GACNNNGTC 1 cut(s) 17
PvuII CAGCTG 2 cut(s) 200, 616
RruI TCGCGA 1 cut(s) 126
RsaI GTAC 2 cut(s) 653, 911
RsaNI GTAC 2 cut(s) 652, 910
RseI CAYNNNNRTG 1 cut(s) 969
SalI GTCGAC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 564, 839
SatI GCNGC 7 cut(s) 198, 201, 294, 459, 678, 765, 807
Sau3AI GATC 4 cut(s) 505, 610, 878, 882
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 2 cut(s) 30, 806
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 448, 993
SfaNI GCATC 3 cut(s) 55, 445, 707
SfcI CTRYAG 3 cut(s) 316, 369, 1002
SgrDI CGTCGACG 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 969
SphI GCATGC 2 cut(s) 698, 974
Sse9I AATT 2 cut(s) 474, 997
SsiI CCGC 2 cut(s) 294, 946
SspMI CTAG 6 cut(s) 141, 324, 462, 497, 530, 824
StyD4I CCNGG 1 cut(s) 606
TaaI ACNGT 1 cut(s) 785
TaiI ACGT 1 cut(s) 653
TaqI TCGA 6 cut(s) 21, 351, 508, 543, 664, 881
TasI AATT 2 cut(s) 474, 997
TatI WGTACW 1 cut(s) 909
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 4 cut(s) 730, 746, 755, 941
Tru1I TTAA 2 cut(s) 564, 839
Tru9I TTAA 2 cut(s) 564, 839
TscAI CASTG 1 cut(s) 851
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 6 cut(s) 197, 200, 458, 677, 764, 806
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 144, 203, 627
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 851
Tth111I GACNNNGTC 1 cut(s) 17
XapI RAATTY 1 cut(s) 474
XceI RCATGY 3 cut(s) 407, 698, 974
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 6 cut(s) 141, 324, 462, 497, 530, 824
Zsp2I ATGCAT 2 cut(s) 700, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.