pycom12g00680

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0004155
Physical Location & Seq
Forward (+)
626624 .. 628347
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g00680.3

Sequence Viewer

Length: 864 bp
ATGAGCCAAGACGCCATGACAGTGAACCAATCTCCGCCGCTGCAGTCGAGGTCCGACGCCCTAGAAAACCTAACCAAAGGCCCACTCTCCTCGTCGATTTCCAAGCTCTCCGGCTCCTCGCGATTCTTGCCTAACAGCAAGGACTTCTATTTCTACCGCAACTTCGACGAATTCAAAGCCCCGATCGAGAAAATCACCAAGGAGGCGCAGACGATGCTCGGCTCGATTGGCTCATCGGCGCCCGTTTTGGGGAAACCGATGGCTTTCCCCCAAGACTTGGACGACGGGTACGATTGGCTCGTTAATGTGAACGACGAGGTGCTGGAGAGGTTTGACTCGTCGGTGGATGAGTTCAAGAGGGTGAGGAAGGAGGCGGAGGAGGCCAAGCGGCCGACGAGTGCGGCATTGGACACAGACGATGGGTTTCAGTTGGTGTGTGGGAAGAAGAAGAAAAAGGGGTCCACTGGGTTGGCTTCGGCCAGTGGGAACGATGATTCGAGTCAGGTTTCCACCGCCGTGAAGGTGGCTGCCAAGGACAAGAAAACTGTGGCGGCGACGAAGCCCAAGGTTCCGTTTCATATACCAAGCATTCGGAGGTCTCAGGAGGAGTTTAACATTTTGGTTAACAATGCAAACCAGCCGTTTGAGCATGTTTTGTTGCAGAGAAGTGAGGATGGTCAGCGGTTCCTTCATCCCCTAGAGGAGCTTTCTGTTCTGGATTTTGTTGACAACAACGTCGGGGATGTTGAGTCTGTAAAACCGCCTTCATTAAAGTCTACGCCATTCAAGCTTGTGGAGGAGGTCAAAGATCTGGAAGAGCTAGCAGCTAAGCTCCGTGCTGTTAATGAATTTGCGCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

288

Amino Acids

31.67

Weight (kDa)

5.34

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 734
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 776
AccII CGCG 1 cut(s) 121
AcoI YGGCCR 2 cut(s) 389, 477
AcsI RAATTY 2 cut(s) 170, 848
AcyI GRCGYC 3 cut(s) 12, 57, 239
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 248, 249, 277
AgsI TTSAA 3 cut(s) 175, 355, 787
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 6 cut(s) 106, 706, 790, 820, 827, 832
AluI AGCT 6 cut(s) 106, 706, 790, 820, 827, 832
Alw26I GTCTC 1 cut(s) 603
AoxI GGCC 4 cut(s) 79, 381, 389, 477
ApeKI GCWGC 3 cut(s) 40, 527, 824
ApoI RAATTY 2 cut(s) 170, 848
AspLEI GCGC 3 cut(s) 208, 241, 856
AspS9I GGNCC 3 cut(s) 51, 80, 459
AsuHPI GGTGA 2 cut(s) 187, 373
AsuNHI GCTAGC 1 cut(s) 820
AvaII GGWCC 2 cut(s) 51, 459
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 3 cut(s) 27, 514, 836
BccI CCATC 3 cut(s) 253, 413, 668
BceAI ACGGC 2 cut(s) 500, 625
BcoDI GTCTC 1 cut(s) 603
BfaI CTAG 3 cut(s) 62, 698, 821
BfmI CTRYAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 242
BglII AGATCT 1 cut(s) 808
BisI GCNGC 7 cut(s) 38, 41, 389, 402, 528, 552, 825
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 7 cut(s) 39, 42, 390, 403, 529, 553, 826
Bme18I GGWCC 2 cut(s) 51, 459
BmgT120I GGNCC 3 cut(s) 51, 80, 459
BmiI GGNNCC 5 cut(s) 115, 240, 460, 570, 686
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 824
BmuI ACTGGG 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 828
BsaHI GRCGYC 3 cut(s) 12, 57, 239
BsaI GGTCTC 1 cut(s) 603
BsaJI CCNNGG 3 cut(s) 198, 531, 564
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 249, 277
Bse1I ACTGG 2 cut(s) 469, 480
BseDI CCNNGG 3 cut(s) 198, 531, 564
BseGI GGATG 4 cut(s) 352, 679, 691, 748
BseLI CCNNNNNNNGG 3 cut(s) 248, 249, 277
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 2 cut(s) 469, 480
BseRI GAGGAG 6 cut(s) 79, 106, 392, 620, 716, 812
BseX3I CGGCCG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 27, 514, 836
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 2 cut(s) 186, 392
BshFI GGCC 4 cut(s) 81, 383, 391, 479
BshNI GGYRCC 1 cut(s) 238
BsiEI CGRYCG 2 cut(s) 186, 392
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 248, 249, 277
BsmAI GTCTC 1 cut(s) 603
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 4 cut(s) 81, 383, 391, 479
Bso31I GGTCTC 1 cut(s) 603
Bsp143I GATC 2 cut(s) 183, 808
Bsp1720I GCTNAGC 1 cut(s) 828
Bsp68I TCGCGA 1 cut(s) 121
BspANI GGCC 4 cut(s) 81, 383, 391, 479
BspCNI CTCAG 1 cut(s) 613
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 5 cut(s) 115, 240, 460, 570, 686
BspMAI CTGCAG 1 cut(s) 45
BspOI GCTAGC 1 cut(s) 824
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 603
BsrI ACTGG 2 cut(s) 469, 480
BssECI CCNNGG 3 cut(s) 198, 531, 564
BssMI GATC 2 cut(s) 183, 808
BssNI GRCGYC 3 cut(s) 12, 57, 239
BssT1I CCWWGG 3 cut(s) 198, 531, 564
Bst4CI ACNGT 2 cut(s) 22, 547
Bst6I CTCTTC 1 cut(s) 810
BstACI GRCGYC 3 cut(s) 12, 57, 239
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 2 cut(s) 600, 828
BstF5I GGATG 4 cut(s) 352, 679, 691, 748
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 3 cut(s) 208, 241, 856
BstKTI GATC 2 cut(s) 186, 811
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 2 cut(s) 183, 808
BstMCI CGRYCG 2 cut(s) 186, 392
BstMWI GCNNNNNNNGC 6 cut(s) 127, 214, 228, 380, 646, 787
BstNSI RCATGY 1 cut(s) 653
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 27, 514, 836
BstX2I RGATCY 1 cut(s) 808
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 808
BstZI CGGCCG 1 cut(s) 389
BsuRI GGCC 4 cut(s) 81, 383, 391, 479
BtsCI GGATG 4 cut(s) 352, 679, 691, 748
BtsIMutI CAGTG 3 cut(s) 27, 462, 487
BtuMI TCGCGA 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 822
CfoI GCGC 3 cut(s) 208, 241, 856
Cfr13I GGNCC 3 cut(s) 51, 80, 459
CseI GACGC 2 cut(s) 20, 65
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 16, 650
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 600, 828
DinI GGCGCC 1 cut(s) 240
DpnI GATC 2 cut(s) 185, 810
DpnII GATC 2 cut(s) 183, 808
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
EaeI YGGCCR 2 cut(s) 389, 477
EagI CGGCCG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
EciI GGCGGA 2 cut(s) 24, 389
EclXI CGGCCG 1 cut(s) 389
Eco130I CCWWGG 3 cut(s) 198, 531, 564
Eco31I GGTCTC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 51, 459
Eco52I CGGCCG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 170
EcoT14I CCWWGG 3 cut(s) 198, 531, 564
EgeI GGCGCC 1 cut(s) 240
EheI GGCGCC 1 cut(s) 240
ErhI CCWWGG 3 cut(s) 198, 531, 564
FaeI CATG 2 cut(s) 19, 653
FaiI YATR 4 cut(s) 17, 579, 581, 651
FatI CATG 2 cut(s) 15, 649
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 7 cut(s) 38, 41, 389, 402, 528, 552, 825
FokI GGATG 4 cut(s) 359, 678, 686, 755
Fsp4HI GCNGC 7 cut(s) 38, 41, 389, 402, 528, 552, 825
FspBI CTAG 3 cut(s) 62, 698, 821
GlaI GCGC 3 cut(s) 207, 240, 855
GluI GCNGC 7 cut(s) 38, 41, 389, 402, 528, 552, 825
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 4 cut(s) 81, 383, 391, 479
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 20, 65
HhaI GCGC 3 cut(s) 208, 241, 856
Hin1I GRCGYC 3 cut(s) 12, 57, 239
Hin1II CATG 2 cut(s) 19, 653
Hin6I GCGC 3 cut(s) 206, 239, 854
HinP1I GCGC 3 cut(s) 206, 239, 854
HincII GTYRAC 2 cut(s) 625, 727
HindII GTYRAC 2 cut(s) 625, 727
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 5 cut(s) 123, 335, 494, 499, 749
HpaI GTTAAC 1 cut(s) 625
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 187, 373
Hpy166II GTNNAC 6 cut(s) 25, 310, 462, 625, 727, 777
Hpy188I TCNGA 2 cut(s) 55, 594
Hpy188III TCNNGA 6 cut(s) 120, 187, 355, 602, 716, 812
Hpy8I GTNNAC 6 cut(s) 25, 310, 462, 625, 727, 777
Hpy99I CGWCG 9 cut(s) 59, 97, 170, 287, 317, 343, 397, 559, 740
HpyAV CCTTC 4 cut(s) 361, 514, 698, 774
HpyCH4III ACNGT 2 cut(s) 22, 547
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 3 cut(s) 43, 632, 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 214, 228, 380, 646, 787
HpyF3I CTNAG 2 cut(s) 600, 828
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 3 cut(s) 12, 57, 239
Hsp92II CATG 2 cut(s) 19, 653
HspAI GCGC 3 cut(s) 206, 239, 854
KasI GGCGCC 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 625
Kzo9I GATC 2 cut(s) 183, 808
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 3 cut(s) 119, 703, 837
LpnPI CCDG 9 cut(s) 124, 308, 450, 488, 493, 587, 650, 701, 797
Lsp1109I GCAGC 3 cut(s) 27, 514, 836
LweI GCATC 1 cut(s) 204
MaeI CTAG 3 cut(s) 62, 698, 821
MaeII ACGT 1 cut(s) 735
MalI GATC 2 cut(s) 185, 810
MboI GATC 2 cut(s) 183, 808
MboII GAAGA 4 cut(s) 454, 457, 460, 827
MflI RGATCY 1 cut(s) 808
MluCI AATT 2 cut(s) 170, 848
Mly113I GGCGCC 1 cut(s) 239
MlyI GAGTC 3 cut(s) 329, 508, 758
MmeI TCCRAC 1 cut(s) 78
MseI TTAA 5 cut(s) 303, 612, 624, 770, 843
MslI CAYNNNNRTG 2 cut(s) 20, 515
MspA1I CMGCKG 2 cut(s) 40, 682
MspI CCGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 588
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 6 cut(s) 127, 214, 228, 380, 646, 787
NarI GGCGCC 1 cut(s) 239
NdeII GATC 2 cut(s) 183, 808
NheI GCTAGC 1 cut(s) 820
NlaIII CATG 2 cut(s) 19, 653
NlaIV GGNNCC 5 cut(s) 115, 240, 460, 570, 686
NmeAIII GCCGAG 1 cut(s) 198
NruI TCGCGA 1 cut(s) 121
NspI RCATGY 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 297
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 123, 494
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 7 cut(s) 39, 42, 390, 403, 529, 553, 826
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 3 cut(s) 329, 507, 757
PluTI GGCGCC 1 cut(s) 242
PpsI GAGTC 3 cut(s) 329, 507, 757
PspN4I GGNNCC 5 cut(s) 115, 240, 460, 570, 686
PspPI GGNCC 3 cut(s) 51, 80, 459
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 808
PvuI CGATCG 1 cut(s) 186
RruI TCGCGA 1 cut(s) 121
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 20, 515
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 5 cut(s) 303, 612, 624, 770, 843
SatI GCNGC 7 cut(s) 38, 41, 389, 402, 528, 552, 825
Sau3AI GATC 2 cut(s) 183, 808
Sau96I GGNCC 3 cut(s) 51, 80, 459
SchI GAGTC 3 cut(s) 329, 508, 758
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 41
SfoI GGCGCC 1 cut(s) 240
SinI GGWCC 2 cut(s) 51, 459
SmiMI CAYNNNNRTG 2 cut(s) 20, 515
Sse9I AATT 2 cut(s) 170, 848
SspDI GGCGCC 1 cut(s) 238
SspMI CTAG 3 cut(s) 62, 698, 821
StyI CCWWGG 3 cut(s) 198, 531, 564
TaaI ACNGT 2 cut(s) 22, 547
TaiI ACGT 1 cut(s) 738
TaqI TCGA 6 cut(s) 47, 95, 165, 186, 224, 497
TasI AATT 2 cut(s) 170, 848
TauI GCSGC 4 cut(s) 40, 391, 404, 554
TfiI GAWTC 2 cut(s) 123, 494
Tru1I TTAA 5 cut(s) 303, 612, 624, 770, 843
Tru9I TTAA 5 cut(s) 303, 612, 624, 770, 843
TscAI CASTG 3 cut(s) 27, 469, 487
TseI GCWGC 3 cut(s) 40, 527, 824
TspDTI ATGAA 4 cut(s) 566, 680, 756, 861
TspGWI ACGGA 2 cut(s) 561, 824
TspRI CASTG 3 cut(s) 27, 469, 487
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 51, 459
XapI RAATTY 2 cut(s) 170, 848
XceI RCATGY 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 776
XspI CTAG 3 cut(s) 62, 698, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.