Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8388783.1

Orthogroup ID

OG0004155

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 901

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8388783.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

ccacagccaacctctcggggtcctcgagagccataccttcgggagaggacttctattactactgcaattttgacgaatttaaagtctcaatcgaagaaatggcaaagcaatctcagccgatgctccaattgattgggtcgtcggcaagcctcagtttcccgcaagatttggatttggaggactcctacgattggcttgttaatgtcaacgacgaggtcctagagagggtggacgtgtctttggaggctgaggggttggtggaagtggtggctgtagcgccggcgttagggctcagggctttcaacaagaaggcagatcaggtgagtttcgattcgggtccggatgtgtcgatttcgtcgatcggggttctgaaccgattgttattgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

129

Amino Acids

14.08

Weight (kDa)

4.05

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54440 AT1G54440 AT1G54440 AT1G54440 AT1G54440 AT5G35910
fragaria_vesca	FvH4_1g28500 FvH4_1g28500
malus_domestica	MD12G1009000.v1.1 MD14G1006500.v1.1
prunus_persica	Prupe.7G010800_v2.0.a1
pyrus_communis	pycom12g00680 pycom12g00690 pycom14g00500 pycom14g00510
rosa_chinensis	RchiOBHm_Chr3g0496311 RchiOBHm_Chr3g0496321 RchiOBHm_Chr4g0394611
rosa_laevigata	RLG00000022537 RLG00000022993
rosa_multiflora	Rmu_co8388783.1_g000001 Rmu_sc0000333.1_g000028
rosa_roxburghii	Rroxscaffold_4G00327980 Rroxscaffold_6G00389270
rosa_rugosa	Rorug03G0281600
rosa_samantha	Rh3AG271600 Rh3AG328400 Rh3BG364500 Rh3CG317600 Rh3CG361500 Rh3DG364500 Rh4BG043300
rosa_wichuraiana	Rw3G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	76
AfiI	CCNNNNNNNGG	3 cut(s)	191, 225, 286
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	303, 387
AjiI	CACGTC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	90
Ama87I	CYCGRG	2 cut(s)	15, 24
Aor13HI	TCCGGA	1 cut(s)	339
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	20, 216, 337
AsuHPI	GGTGA	1 cut(s)	333
AvaI	CYCGRG	2 cut(s)	15, 24
AvaII	GGWCC	3 cut(s)	20, 216, 337
BanII	GRGCYC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	280
Bme18I	GGWCC	3 cut(s)	20, 216, 337
BmeT110I	CYCGRG	2 cut(s)	15, 24
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	20, 216, 337
BmiI	GGNNCC	2 cut(s)	21, 338
BmsI	GCATC	1 cut(s)	110
Bpu10I	CCTNAGC	2 cut(s)	248, 292
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 225, 286
Bse118I	RCCGGY	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	339
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	191, 225, 286
BseMII	CTCAG	4 cut(s)	127, 165, 239, 306
Bsh1285I	CGRYCG	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	15, 24
BsiSI	CCGG	2 cut(s)	280, 340
BslI	CCNNNNNNNGG	3 cut(s)	191, 225, 286
BsmAI	GTCTC	1 cut(s)	90
BsoBI	CYCGRG	2 cut(s)	15, 24
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	315, 359
BspACI	CCGC	1 cut(s)	160
BspCNI	CTCAG	4 cut(s)	126, 164, 240, 305
BspEI	TCCGGA	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	21, 338
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssMI	GATC	2 cut(s)	315, 359
BstC8I	GCNNGC	2 cut(s)	147, 281
BstDEI	CTNAG	4 cut(s)	113, 151, 248, 292
BstF5I	GGATG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	318, 362
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	315, 359
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	147, 281
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	20, 216, 337
CviJI	RGCY	9 cut(s)	7, 31, 117, 149, 195, 247, 271, 291, 298
CviKI_1	RGCY	9 cut(s)	7, 31, 117, 149, 195, 247, 271, 291, 298
DdeI	CTNAG	4 cut(s)	113, 151, 248, 292
DpnI	GATC	2 cut(s)	317, 361
DpnII	GATC	2 cut(s)	315, 359
DraI	TTTAAA	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	3 cut(s)	20, 216, 337
Eco88I	CYCGRG	2 cut(s)	15, 24
EcoO109I	RGGNCCY	2 cut(s)	20, 216
EcoT38I	GRGCYC	1 cut(s)	293
FaiI	YATR	1 cut(s)	34
FauI	CCCGC	1 cut(s)	167
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	220
GlaI	GCGC	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	2 cut(s)	280, 340
HhaI	GCGC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	181, 331
HpaII	CCGG	2 cut(s)	280, 340
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	207, 231
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	3 cut(s)	26, 41, 340
Hpy8I	GTNNAC	2 cut(s)	207, 231
Hpy99I	CGWCG	3 cut(s)	144, 214, 360
HpyAV	CCTTC	2 cut(s)	47, 303
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	4 cut(s)	113, 151, 248, 292
HpySE526I	ACGT	1 cut(s)	233
HspAI	GCGC	1 cut(s)	277
Kpn2I	TCCGGA	1 cut(s)	339
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	315, 359
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	279, 293, 304, 353
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	220
MaeII	ACGT	1 cut(s)	233
MalI	GATC	2 cut(s)	317, 361
MboI	GATC	2 cut(s)	315, 359
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	4 cut(s)	66, 76, 127, 387
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	9 cut(s)	22, 33, 39, 160, 171, 207, 218, 237, 243
MreI	CGCCGGCG	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	339
MroNI	GCCGGC	1 cut(s)	279
MseI	TTAA	2 cut(s)	80, 200
MspI	CCGG	2 cut(s)	280, 340
MunI	CAATTG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	114
NaeI	GCCGGC	1 cut(s)	281
NdeII	GATC	2 cut(s)	315, 359
NgoMIV	GCCGGC	1 cut(s)	279
NlaIV	GGNNCC	2 cut(s)	21, 338
PaeR7I	CTCGAG	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 355
PdiI	GCCGGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	331
PflFI	GACNNNGTC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	362
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	2 cut(s)	20, 216
Psp5II	RGGWCCY	2 cut(s)	20, 216
PspN4I	GGNNCC	2 cut(s)	21, 338
PspPI	GGNCC	3 cut(s)	20, 216, 337
PspPPI	RGGWCCY	2 cut(s)	20, 216
PsyI	GACNNNGTC	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	80, 200
Sau3AI	GATC	2 cut(s)	315, 359
Sau96I	GGNCC	3 cut(s)	20, 216, 337
SchI	GAGTC	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	5 cut(s)	14, 39, 218, 236, 323
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	272
Sfr274I	CTCGAG	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	279
SinI	GGWCC	3 cut(s)	20, 216, 337
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	66, 76, 127, 387
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	5 cut(s)	25, 92, 329, 349, 358
TasI	AATT	4 cut(s)	66, 76, 127, 387
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	80, 200
Tru9I	TTAA	2 cut(s)	80, 200
Tth111I	GACNNNGTC	1 cut(s)	214
VpaK11BI	GGWCC	3 cut(s)	20, 216, 337
XapI	RAATTY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	24
XspI	CTAG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.