Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000333.1

Orthogroup ID

OG0004155

Physical Location & Seq

Genomic Coordinates Forward (+)

219326 .. 220582

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000333.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgagaagcctgattgatcttagctgcaacttgcgaagaagaggagaagaggaacgagtgaacgaccaaagcggcgctgagagtgaagccacagccaacctctcggggtcctcgagagccataccttcgggagaggacttctattactactgcaattttgacgaatttaaagtctcaatcgaagaaatggcaaagcaatctcagccgatgctccaattgattgggtcgtcggcaagcctcagtttcccgcaagatttggatttggaggactcctacgattggcttgttaatgtcaacgacgaggtcctagagagggtggacgtgtctttggaggctgaggggttggtggaagtggtggctgtagcgccggcgttagggctcagggctttcaacaagaaggcagatcaggtgagtttcgattcgggtccggatgtgtcgatttcgtcgatcggggttctgaaccgattgttattgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

159

Amino Acids

17.49

Weight (kDa)

4.21

Isoelectric Point (pI)

65.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54440 AT1G54440 AT1G54440 AT1G54440 AT1G54440 AT5G35910
fragaria_vesca	FvH4_1g28500 FvH4_1g28500
malus_domestica	MD12G1009000.v1.1 MD14G1006500.v1.1
prunus_persica	Prupe.7G010800_v2.0.a1
pyrus_communis	pycom12g00680 pycom12g00690 pycom14g00500 pycom14g00510
rosa_chinensis	RchiOBHm_Chr3g0496311 RchiOBHm_Chr3g0496321 RchiOBHm_Chr4g0394611
rosa_laevigata	RLG00000022537 RLG00000022993
rosa_multiflora	Rmu_co8388783.1_g000001 Rmu_sc0000333.1_g000028
rosa_roxburghii	Rroxscaffold_4G00327980 Rroxscaffold_6G00389270
rosa_rugosa	Rorug03G0281600
rosa_samantha	Rh3AG271600 Rh3AG328400 Rh3BG364500 Rh3CG317600 Rh3CG361500 Rh3DG364500 Rh4BG043300
rosa_wichuraiana	Rw3G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	2 cut(s)	72, 248
AcsI	RAATTY	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	279, 313, 374
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	391, 475
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	178
Ama87I	CYCGRG	2 cut(s)	103, 112
Aor13HI	TCCGGA	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AspLEI	GCGC	2 cut(s)	77, 367
AspS9I	GGNCC	3 cut(s)	108, 304, 425
AsuHPI	GGTGA	1 cut(s)	421
AvaI	CYCGRG	2 cut(s)	103, 112
AvaII	GGWCC	3 cut(s)	108, 304, 425
BanII	GRGCYC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	78, 368
BisI	GCNGC	2 cut(s)	25, 73
BlsI	GCNGC	2 cut(s)	26, 74
Bme18I	GGWCC	3 cut(s)	108, 304, 425
BmeT110I	CYCGRG	2 cut(s)	103, 112
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	108, 304, 425
BmiI	GGNNCC	2 cut(s)	109, 426
BmsI	GCATC	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	336, 380
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 313, 374
Bse118I	RCCGGY	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	427
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	3 cut(s)	279, 313, 374
BseMII	CTCAG	5 cut(s)	69, 215, 253, 327, 394
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	450
BsiHKCI	CYCGRG	2 cut(s)	103, 112
BsiSI	CCGG	2 cut(s)	368, 428
BslI	CCNNNNNNNGG	3 cut(s)	279, 313, 374
BsmAI	GTCTC	1 cut(s)	178
BsoBI	CYCGRG	2 cut(s)	103, 112
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	16, 403, 447
BspACI	CCGC	2 cut(s)	72, 248
BspCNI	CTCAG	5 cut(s)	70, 214, 252, 328, 393
BspEI	TCCGGA	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	109, 426
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssMI	GATC	3 cut(s)	16, 403, 447
Bst6I	CTCTTC	2 cut(s)	34, 42
BstC8I	GCNNGC	2 cut(s)	235, 369
BstDEI	CTNAG	6 cut(s)	20, 78, 201, 239, 336, 380
BstF5I	GGATG	1 cut(s)	436
BstH2I	RGCGCY	2 cut(s)	78, 368
BstHHI	GCGC	2 cut(s)	77, 367
BstKTI	GATC	3 cut(s)	19, 406, 450
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	16, 403, 447
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	235, 369
CfoI	GCGC	2 cut(s)	77, 367
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	3 cut(s)	108, 304, 425
DdeI	CTNAG	6 cut(s)	20, 78, 201, 239, 336, 380
DpnI	GATC	3 cut(s)	18, 405, 449
DpnII	GATC	3 cut(s)	16, 403, 447
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	34, 42
EarI	CTCTTC	2 cut(s)	34, 42
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	108, 304, 425
Eco88I	CYCGRG	2 cut(s)	103, 112
EcoO109I	RGGNCCY	2 cut(s)	108, 304
EcoT38I	GRGCYC	1 cut(s)	381
FaiI	YATR	1 cut(s)	122
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	25, 73
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	25, 73
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	76, 366
GluI	GCNGC	2 cut(s)	25, 73
HaeII	RGCGCY	2 cut(s)	78, 368
HapII	CCGG	2 cut(s)	368, 428
HhaI	GCGC	2 cut(s)	77, 367
Hin6I	GCGC	2 cut(s)	75, 365
HinP1I	GCGC	2 cut(s)	75, 365
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	269, 419
HpaII	CCGG	2 cut(s)	368, 428
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	3 cut(s)	61, 295, 319
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	3 cut(s)	114, 129, 428
Hpy8I	GTNNAC	3 cut(s)	61, 295, 319
Hpy99I	CGWCG	3 cut(s)	232, 302, 448
HpyAV	CCTTC	2 cut(s)	135, 391
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	27, 153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	6 cut(s)	20, 78, 201, 239, 336, 380
HpySE526I	ACGT	1 cut(s)	321
HspAI	GCGC	2 cut(s)	75, 365
Kpn2I	TCCGGA	1 cut(s)	427
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	16, 403, 447
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	5 cut(s)	23, 367, 381, 392, 441
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	321
MalI	GATC	3 cut(s)	18, 405, 449
MboI	GATC	3 cut(s)	16, 403, 447
MboII	GAAGA	4 cut(s)	48, 51, 59, 194
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	4 cut(s)	154, 164, 215, 475
MlyI	GAGTC	1 cut(s)	263
MreI	CGCCGGCG	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	2 cut(s)	168, 288
MspI	CCGG	2 cut(s)	368, 428
MunI	CAATTG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	202
NaeI	GCCGGC	1 cut(s)	369
NdeII	GATC	3 cut(s)	16, 403, 447
NgoMIV	GCCGGC	1 cut(s)	367
NlaIV	GGNNCC	2 cut(s)	109, 426
PaeR7I	CTCGAG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 443
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	26, 74
Ple19I	CGATCG	1 cut(s)	450
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PpuMI	RGGWCCY	2 cut(s)	108, 304
Psp5II	RGGWCCY	2 cut(s)	108, 304
PspN4I	GGNNCC	2 cut(s)	109, 426
PspPI	GGNCC	3 cut(s)	108, 304, 425
PspPPI	RGGWCCY	2 cut(s)	108, 304
PsyI	GACNNNGTC	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	168, 288
SatI	GCNGC	2 cut(s)	25, 73
Sau3AI	GATC	3 cut(s)	16, 403, 447
Sau96I	GGNCC	3 cut(s)	108, 304, 425
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	6 cut(s)	26, 102, 127, 306, 324, 411
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	3 cut(s)	108, 304, 425
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	154, 164, 215, 475
SsiI	CCGC	2 cut(s)	72, 248
SspMI	CTAG	1 cut(s)	308
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	5 cut(s)	113, 180, 417, 437, 446
TasI	AATT	4 cut(s)	154, 164, 215, 475
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	168, 288
Tru9I	TTAA	2 cut(s)	168, 288
TseI	GCWGC	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	3 cut(s)	108, 304, 425
XapI	RAATTY	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.