RchiOBHm_Chr3g0496311

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004155
Physical Location & Seq
Reverse (-)
47058169 .. 47061599
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45865

Sequence Viewer

Length: 957 bp
ATGGCATCTGAAGAAAATGTGTTGGTCAGTGATCGATCTGAACCCTTACCAGATGAATCTGGATGCAATTTAATTAATGGTGATGTATCTGCACCTTCACCAGCTGCTCCGCCTCATAAAGAGGACTTTAGAGAGCATGGATGTGGTGCCTCCAATGGAGAAGGAAATGTTGGATTTGAAGTTCATCCTAGAGACAACATTGTTACAGGGAAAAGCAGGAAAGGAAGTAGCATTGGCTGTTCCTTAGAATCTGCAAAGGTTACTGGAGCAACTGTTCAGGTGCAAAAGAAGCCTAGTCGTGCTTTCAGTGCACTCTTGGGGACTGCAGTTCCAAAAAGAAAATTTGATGCTGGTGTCAAGGACAAGGAAGATAATAAGTTGGAGCAGATTAGATCTTCAGTCAATTTCCCATTCCACTCATTCTCAGGTGGGATGGAGCAATCAAATCCCAAGATTGAAGAACCAGGAAAAGGTTCTGAAAATCCCCATTCTGAAATGCCCGTTACTGTATCACCTACCAGGCGGAGTTTAGGAGATATTATAACATTAGAAAATGATTCACATGTACCTGAGCACAAGGAGGATAACTCGGTGGCTTCTGCTTTAGGCATGGATGGAGAAGATGATCCTATGTCTCTCTCAGAGTTGTCCTCAAGCTTCAAGAAATGCTTTCCGCCGCCTAATCAAAATAGGAAAGCCAGAGAACTGGAGAAATCCCAGGAATCTGGTGGCTTGCAGGTGAAACCTTTTGACTATGAAGCGGCAAGGAGACAGGTCATATTTGGAGAAAAGACAGCCAAGGACGCCAGAGCTGGGGGAGAAGGCATGAAGAGCCTGGGTTCAAGGGCTAAGAAAAAAACTCTAGTTGATGGGGATGATGGGTCAAAAGAGCTACCACAAGGGAGACGACGTCAAGCTTTTCCAGCAACAGGAAATAGAAGTGCAACTTTCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

318

Amino Acids

34.19

Weight (kDa)

6.69

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AarI CACCTGC 1 cut(s) 727
AatII GACGTC 1 cut(s) 913
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 5 cut(s) 110, 523, 674, 677, 761
AclWI GGATC 1 cut(s) 620
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 30, 381
AcyI GRCGYC 2 cut(s) 804, 910
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 3 cut(s) 470, 813, 929
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 4 cut(s) 179, 458, 661, 843
AjnI CCWGG 4 cut(s) 463, 518, 717, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AloI GAACNNNNNNTCC 4 cut(s) 165, 197, 258, 290
AluBI AGCT 5 cut(s) 104, 657, 812, 892, 917
AluI AGCT 5 cut(s) 104, 657, 812, 892, 917
Alw21I GWGCWC 2 cut(s) 313, 576
Alw26I GTCTC 4 cut(s) 186, 639, 763, 898
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 1 cut(s) 620
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 472
AsuHPI GGTGA 4 cut(s) 90, 92, 504, 751
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 313, 576
BbvI GCAGC 1 cut(s) 91
BccI CCATC 4 cut(s) 427, 608, 863, 872
BciT130I CCWGG 4 cut(s) 465, 520, 719, 836
BcoDI GTCTC 4 cut(s) 186, 639, 763, 898
BfaI CTAG 3 cut(s) 189, 294, 863
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 392
BisI GCNGC 3 cut(s) 105, 677, 762
BlsI GCNGC 3 cut(s) 106, 678, 763
Bme1390I CCNGG 4 cut(s) 465, 520, 719, 836
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 4 cut(s) 465, 520, 719, 836
BmsI GCATC 3 cut(s) 14, 53, 337
BplI GAGNNNNNCTC 4 cut(s) 572, 604, 635, 667
BpmI CTGGAG 2 cut(s) 285, 728
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 637
Bsa29I ATCGAT 1 cut(s) 34
BsaHI GRCGYC 2 cut(s) 804, 910
BsaJI CCNNGG 3 cut(s) 717, 798, 835
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 895, 925
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 813, 929
Bse1I ACTGG 2 cut(s) 268, 711
BseBI CCWGG 4 cut(s) 465, 520, 719, 836
BseCI ATCGAT 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 717, 798, 835
BseGI GGATG 6 cut(s) 68, 146, 184, 438, 619, 880
BseLI CCNNNNNNNGG 3 cut(s) 470, 813, 929
BseMII CTCAG 3 cut(s) 438, 561, 654
BseNI ACTGG 2 cut(s) 268, 711
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 812
BsgI GTGCAG 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 313, 576
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 3 cut(s) 470, 813, 929
BsmAI GTCTC 4 cut(s) 186, 639, 763, 898
BsmBI CGTCTC 1 cut(s) 898
BsmFI GGGAC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 313, 576
Bsp143I GATC 4 cut(s) 31, 35, 392, 625
BspACI CCGC 5 cut(s) 110, 523, 674, 677, 761
BspCNI CTCAG 3 cut(s) 437, 562, 653
BspDI ATCGAT 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 1 cut(s) 620
BspQI GCTCTTC 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 268, 711
BssECI CCNNGG 3 cut(s) 717, 798, 835
BssMI GATC 4 cut(s) 31, 35, 392, 625
BssNI GRCGYC 2 cut(s) 804, 910
BssT1I CCWWGG 1 cut(s) 798
Bst2UI CCWGG 4 cut(s) 465, 520, 719, 836
Bst4CI ACNGT 2 cut(s) 274, 508
Bst6I CTCTTC 1 cut(s) 824
BstACI GRCGYC 2 cut(s) 804, 910
BstC8I GCNNGC 1 cut(s) 734
BstDEI CTNAG 5 cut(s) 244, 424, 570, 640, 849
BstF5I GGATG 6 cut(s) 68, 146, 184, 438, 619, 880
BstKTI GATC 4 cut(s) 34, 38, 395, 628
BstMAI GTCTC 4 cut(s) 186, 639, 763, 898
BstMBI GATC 4 cut(s) 31, 35, 392, 625
BstMWI GCNNNNNNNGC 5 cut(s) 289, 308, 803, 831, 923
BstNI CCWGG 4 cut(s) 465, 520, 719, 836
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 4 cut(s) 463, 518, 717, 834
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 2 cut(s) 706, 725
BstYI RGATCY 1 cut(s) 392
Bsu15I ATCGAT 1 cut(s) 34
BsuTUI ATCGAT 1 cut(s) 34
BtsCI GGATG 6 cut(s) 68, 146, 184, 438, 619, 880
BtsIMutI CAGTG 2 cut(s) 34, 313
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 734
ClaI ATCGAT 1 cut(s) 34
CseI GACGC 1 cut(s) 812
Csp6I GTAC 1 cut(s) 566
CviAII CATG 4 cut(s) 137, 563, 610, 826
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 5 cut(s) 244, 424, 570, 640, 849
DpnI GATC 4 cut(s) 33, 37, 394, 627
DpnII GATC 4 cut(s) 31, 35, 392, 625
Eam1104I CTCTTC 1 cut(s) 824
EarI CTCTTC 1 cut(s) 824
EciI GGCGGA 3 cut(s) 99, 538, 663
Eco130I CCWWGG 1 cut(s) 798
Eco57I CTGAAG 2 cut(s) 30, 381
EcoRII CCWGG 4 cut(s) 463, 518, 717, 834
EcoT14I CCWWGG 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 798
Esp3I CGTCTC 1 cut(s) 898
FaeI CATG 4 cut(s) 140, 566, 613, 829
FaiI YATR 9 cut(s) 117, 138, 542, 564, 611, 632, 756, 779, 827
FalI AAGNNNNNCTT 3 cut(s) 653, 685, 931
FaqI GGGAC 1 cut(s) 334
FatI CATG 4 cut(s) 136, 562, 609, 825
Fnu4HI GCNGC 3 cut(s) 105, 677, 762
FokI GGATG 6 cut(s) 75, 153, 171, 445, 626, 887
Fsp4HI GCNGC 3 cut(s) 105, 677, 762
FspBI CTAG 3 cut(s) 189, 294, 863
GluI GCNGC 3 cut(s) 105, 677, 762
GsaI CCCAGC 1 cut(s) 816
GsuI CTGGAG 2 cut(s) 285, 728
HgaI GACGC 1 cut(s) 812
Hin1I GRCGYC 2 cut(s) 804, 910
Hin1II CATG 4 cut(s) 140, 566, 613, 829
HindIII AAGCTT 2 cut(s) 655, 915
HinfI GANTC 4 cut(s) 56, 248, 557, 722
HphI GGTGA 4 cut(s) 90, 92, 504, 751
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 5 cut(s) 10, 40, 478, 493, 643
Hpy188III TCNNGA 2 cut(s) 60, 661
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 912
HpyAV CCTTC 3 cut(s) 105, 155, 815
HpyCH4III ACNGT 2 cut(s) 274, 508
HpyCH4IV ACGT 1 cut(s) 910
HpyCH4V TGCA 8 cut(s) 66, 92, 254, 283, 311, 326, 736, 944
HpyF10VI GCNNNNNNNGC 5 cut(s) 289, 308, 803, 831, 923
HpyF3I CTNAG 5 cut(s) 244, 424, 570, 640, 849
HpySE526I ACGT 1 cut(s) 910
Hsp92I GRCGYC 2 cut(s) 804, 910
Hsp92II CATG 4 cut(s) 140, 566, 613, 829
Kzo9I GATC 4 cut(s) 31, 35, 392, 625
LguI GCTCTTC 1 cut(s) 824
LmnI GCTCC 4 cut(s) 112, 266, 382, 436
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 3 cut(s) 14, 53, 337
MaeI CTAG 3 cut(s) 189, 294, 863
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 3 cut(s) 202, 259, 502
MalI GATC 4 cut(s) 33, 37, 394, 627
MboI GATC 4 cut(s) 31, 35, 392, 625
MboII GAAGA 6 cut(s) 23, 380, 387, 470, 632, 841
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 313, 576
MluCI AATT 4 cut(s) 67, 72, 341, 403
MmeI TCCRAC 2 cut(s) 151, 360
MnlI CCTC 5 cut(s) 115, 123, 160, 574, 661
MroXI GAANNNNTTC 1 cut(s) 472
MseI TTAA 3 cut(s) 71, 75, 955
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 4 cut(s) 465, 520, 719, 836
MvaI CCWGG 4 cut(s) 465, 520, 719, 836
MwoI GCNNNNNNNGC 5 cut(s) 289, 308, 803, 831, 923
NdeII GATC 4 cut(s) 31, 35, 392, 625
NlaIII CATG 4 cut(s) 140, 566, 613, 829
NlaIV GGNNCC 1 cut(s) 148
NspI RCATGY 1 cut(s) 566
PacI TTAATTAA 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 727
PciI ACATGT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 824
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 4 cut(s) 56, 248, 557, 722
PflFI GACNNNGTC 1 cut(s) 909
PkrI GCNGC 3 cut(s) 106, 678, 763
PscI ACATGT 1 cut(s) 562
PshBI ATTAAT 1 cut(s) 75
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 4 cut(s) 463, 518, 717, 834
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 4 cut(s) 463, 518, 717, 834
PspN4I GGNNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 909
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 3 cut(s) 71, 75, 955
SatI GCNGC 3 cut(s) 105, 677, 762
Sau3AI GATC 4 cut(s) 31, 35, 392, 625
ScrFI CCNGG 4 cut(s) 465, 520, 719, 836
SduI GDGCHC 2 cut(s) 313, 576
SfaNI GCATC 3 cut(s) 14, 53, 337
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 652
SmoI CTYRAG 1 cut(s) 652
Sse9I AATT 4 cut(s) 67, 72, 341, 403
SsiI CCGC 5 cut(s) 110, 523, 674, 677, 761
SspMI CTAG 3 cut(s) 189, 294, 863
StyD4I CCNGG 4 cut(s) 463, 518, 717, 834
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 2 cut(s) 274, 508
TaiI ACGT 1 cut(s) 913
TaqI TCGA 1 cut(s) 34
TasI AATT 4 cut(s) 67, 72, 341, 403
TauI GCSGC 2 cut(s) 679, 764
TfiI GAWTC 4 cut(s) 56, 248, 557, 722
Tru1I TTAA 3 cut(s) 71, 75, 955
Tru9I TTAA 3 cut(s) 71, 75, 955
TscAI CASTG 2 cut(s) 34, 313
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 4 cut(s) 69, 173, 771, 842
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 2 cut(s) 34, 313
Tth111I GACNNNGTC 1 cut(s) 909
VneI GTGCAC 1 cut(s) 309
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 472
XspI CTAG 3 cut(s) 189, 294, 863
ZraI GACGTC 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.