Rh3CG361500

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004155
Physical Location & Seq
Reverse (-)
44916538 .. 44924947
8410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG361500.1

Sequence Viewer

Length: 2283 bp
ATGAGCCATGAGCCGACTCCGCCACCCCCGGCGAGGGCCCAATTGCTCCAAAACCTAGCGACAGCCACAGCCAACCTCTCTGGCTCCTCGCGAGTCATACCTTCGGGAGAGGACTTCTACTACTACCGCAATTTCGACGAATTCAAACTCCCAATCGAAGAAATGGCAAAGCAATCTCAGTCCATGCTCGAATCGATTGGGTCGTCGGCAAGCCTCGGGATGGCTTTCCCCAAGGATTTGGATTTGGAGGACGCCTACGATTGGCTGGTCAATGTGAACGACGAGGTCCTCGAGAGGGTGGACGCGTCGGTGGACGAGTTTAAGAGGATCAGGAGCAGCAGGAACAAGGAGAAGGAAGACGACGAGGGGTTCCAGTTGGTGTGCGGGAAGAAGAAGAAGGGGGATCAGACCTTGTCCAAGGACAGCAAGACTAGCAAGCCCAAGGTCTCCTTTCATGTTCCCTCCATTCGCAAGCCTCAGGAGGAGTTTAACATTCTCGTTAACAATTCAAACCAGCCCTTTGAGCATGTTTGGCTCGACACTGGTGACGATGGTCACCGCTTTCTTCATCCCCTGGCAAAGCTCTCAGTTCTTGATTTTATTGACGATGATATTGGGGGGGTTGAGCCTGTAAAACCGCCAGAAATAGAGGCTACCCCATTCAAGCTTGTGGAGGAGGTCAAAGATCTCAAGGAGCTGGCAGCTAAGTTGCGTGGCGTTAATGAATTTGCGGTTGATTTGGAGCACAACCAATATCGATCCTTCCAAGGATTGACTTGTTTGATGCAAATTTCTACAAGAACTGAAGATTTTATAGTAGATACTTTGAAGCTTAGAATTCATATCGGTCCATATCTTAGGGAAGTTTTCAAGGACCCTTCTAAGAGAAAGATACCAGAATGCAGACTGGAGATTCCGCCCTCTTACCAAAGAGATGGTCAGGTTTACAGGCGCAGTTATGATATATGCATGCATCTCTATGAGAAGGAAGTTTTCACTGAGAATTCCTATCTCCACATATATGGGTTGCAGGGTGCTTGTTTTAATTCTCAGCAGCTTGCCGTTGTTTCCGGTTTATATGAGTGGCGGGATGTTGTTGCTCGTACAGAGGATGAAAGTACTGGCTATATATTACCAAACAAAACTCTACTCGAACTTGCTAAACAGATGCCTGACACAACTAACAAGTTAAGACGATTGGTGAAATCAAAGCATTCATACATTGAGCAGCATCTTTCTTCTGTTGTTAGCGTCATTAGGCACTCTATGCAGAATGCTGCCTTTTTTGAGGCTGCAGCCGAACATCTGAAGGTGGGACGTGTGGAAATGGCATCTGAAGAAAATGTGTTGGTCAGTGATCGATCTGAACCCTTACCAGATGAATCTGGATGCAATTCAATTAATGGTGATGTATCTGCACCTTCACCAGCTGCTCCGCTTCATAAAGAGGAGTTTAGAGAGCATGGATGTGGTGCCTCCAGTGGAGAAGGAAATGTTGGATTTGAAGTTCATCCTAGAGACAACATTGTTACAGGGAAAAGCAGGAAAGGAAGTAGCATCGGCTGTTCCTTAGAATCTGCAAAGGTTACTGGAGCAACTGTTCAGGTGCAAAAGAAGCCTAGTCGTGCTTTCAGTGCACTCTTGGGGACTGCAGTTCCAAAAAGAAAATTTGATGCTGGTGTAAAGGACAAGGAAGATAATAAGTTGGAGCAGATTAGATCTTCAGTCAATTTCCCATTCCACTCATTCTCAGGTGGGATGGAGCAATCAAATCCCAAGATTGAAGAACCAGGAAAAGGTTCTGAAAATCCCCATTCTGAAATGCCCGTTACTGTATCACCTACCAGGCGGAGTTTAGGAGATATTATAACATTAGAAAATGATTCACATGTACCTGAGCACAAGGAGGATAACTCGGTGGCATCTGCTTTAGGCATGGATGGAGAAGATGATCCTATGTCTCTCTCAGAGTTGTCCTCAAGCTTCAAGAAATGCTTTCCGCCGCCTAATCAAAATAGGAAAGCCAGAGAACTGGAGAAATCCCAGGAATCTGGTGGCTTGCAGGTGAAACCTTTTGACTATGAAGCGGCAAGGAGACAGGTCATATTTGGAGAAAAGACAGCCAAGGACGCCAGAGCTGGGGGAGAAGGCATGAAGAGCCTGGGTTCAAGGGCTAAGAAAAAAACTCTAGTTGATGGGGATGATGGGTCAAAAGAGCTACCACAAGGGAGACGACGTCAAGCTTTTCCAGCAACAGGAAATAGAAGTGCAACTTTCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

760

Amino Acids

84.66

Weight (kDa)

5.95

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMC2NT PF08066 30 - 108 8.8e-09 PMC2NT (NUC016) domain
DNA_pol_A_exo1 PF01612 224 - 298 2.8e-11 3'-5' exonuclease
HRDC PF00570 352 - 419 8.1e-14 HRDC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1868
AarI CACCTGC 1 cut(s) 2053
AatII GACGTC 1 cut(s) 2239
Acc36I ACCTGC 1 cut(s) 2053
AccB1I GGYRCC 1 cut(s) 1472
AccII CGCG 2 cut(s) 91, 305
AclWI GGATC 4 cut(s) 335, 411, 753, 1946
AcsI RAATTY 6 cut(s) 140, 725, 789, 837, 1003, 1667
AcuI CTGAAG 4 cut(s) 825, 1328, 1356, 1707
AcyI GRCGYC 3 cut(s) 252, 2130, 2236
AfaI GTAC 3 cut(s) 1105, 1120, 1893
AfiI CCNNNNNNNGG 8 cut(s) 33, 34, 220, 261, 295, 1796, 2139, 2255
AflIII ACRYGT 3 cut(s) 303, 1318, 1888
AjiI CACGTC 1 cut(s) 1319
AjnI CCWGG 5 cut(s) 573, 1789, 1844, 2043, 2160
AjuI GAANNNNNNNTTGG 2 cut(s) 1479, 1511
AloI GAACNNNNNNTCC 4 cut(s) 1491, 1523, 1584, 1616
Alw21I GWGCWC 3 cut(s) 747, 1639, 1902
Alw26I GTCTC 5 cut(s) 451, 1512, 1965, 2089, 2224
Alw44I GTGCAC 1 cut(s) 1635
AlwI GGATC 4 cut(s) 335, 411, 753, 1946
Ama87I CYCGRG 2 cut(s) 215, 290
AoxI GGCC 1 cut(s) 36
ApaI GGGCCC 1 cut(s) 40
ApaLI GTGCAC 1 cut(s) 1635
ApeKI GCWGC 8 cut(s) 336, 701, 1054, 1228, 1277, 1292, 1295, 1430
ApoI RAATTY 6 cut(s) 140, 725, 789, 837, 1003, 1667
ArsI GACNNNNNNTTYG 2 cut(s) 922, 954
AseI ATTAAT 1 cut(s) 1401
Asp700I GAANNNNTTC 1 cut(s) 1798
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 5 cut(s) 36, 37, 286, 848, 874
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 7 cut(s) 548, 557, 1213, 1416, 1418, 1830, 2077
AvaI CYCGRG 2 cut(s) 215, 290
AvaII GGWCC 3 cut(s) 286, 848, 874
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 2 cut(s) 40, 1639
BanI GGYRCC 1 cut(s) 1472
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 747, 1639, 1902
BbvI GCAGC 8 cut(s) 348, 713, 1066, 1240, 1264, 1279, 1307, 1417
BccI CCATC 7 cut(s) 214, 545, 929, 1753, 1934, 2189, 2198
BceAI ACGGC 1 cut(s) 1046
BciT130I CCWGG 5 cut(s) 575, 1791, 1846, 2045, 2162
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 5 cut(s) 451, 1512, 1965, 2089, 2224
BfaI CTAG 5 cut(s) 56, 432, 1515, 1620, 2189
BfmI CTRYAG 2 cut(s) 1293, 1650
BfuAI ACCTGC 1 cut(s) 2053
BglII AGATCT 2 cut(s) 685, 1718
BmcAI AGTACT 1 cut(s) 1120
Bme1390I CCNGG 6 cut(s) 29, 575, 1791, 1846, 2045, 2162
Bme18I GGWCC 3 cut(s) 286, 848, 874
BmeT110I CYCGRG 2 cut(s) 215, 290
BmgBI CACGTC 1 cut(s) 1319
BmgT120I GGNCC 5 cut(s) 36, 37, 286, 848, 874
BmiI GGNNCC 5 cut(s) 38, 85, 371, 876, 1474
BmrFI CCNGG 6 cut(s) 29, 575, 1791, 1846, 2045, 2162
BmsI GCATC 9 cut(s) 774, 982, 1158, 1240, 1340, 1379, 1566, 1663, 1931
BoxI GACNNNNGTC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 363
BplI GAGNNNNNCTC 4 cut(s) 1898, 1930, 1961, 1993
BpmI CTGGAG 4 cut(s) 929, 1462, 1611, 2054
Bpu10I CCTNAGC 1 cut(s) 1896
BpuEI CTTGAG 2 cut(s) 674, 1963
BpuMI CCSGG 1 cut(s) 29
Bsa29I ATCGAT 3 cut(s) 194, 757, 1360
BsaHI GRCGYC 3 cut(s) 252, 2130, 2236
BsaI GGTCTC 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 1070
BsaXI ACNNNNNCTCC 4 cut(s) 1584, 1614, 2221, 2251
Bsc4I CCNNNNNNNGG 8 cut(s) 33, 34, 220, 261, 295, 1796, 2139, 2255
Bse1I ACTGG 7 cut(s) 373, 547, 912, 1126, 1479, 1594, 2037
Bse21I CCTNAGG 1 cut(s) 477
BseBI CCWGG 5 cut(s) 575, 1791, 1846, 2045, 2162
BseCI ATCGAT 3 cut(s) 194, 757, 1360
BseLI CCNNNNNNNGG 8 cut(s) 33, 34, 220, 261, 295, 1796, 2139, 2255
BseMII CTCAG 8 cut(s) 191, 491, 600, 990, 1064, 1764, 1887, 1980
BseNI ACTGG 7 cut(s) 373, 547, 912, 1126, 1479, 1594, 2037
BseRI GAGGAG 4 cut(s) 76, 497, 689, 1463
BseSI GKGCMC 2 cut(s) 40, 1639
BseXI GCAGC 8 cut(s) 348, 713, 1066, 1240, 1264, 1279, 1307, 1417
BseYI CCCAGC 1 cut(s) 2138
BsgI GTGCAG 1 cut(s) 1401
Bsh1236I CGCG 2 cut(s) 91, 305
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 1472
BshVI ATCGAT 3 cut(s) 194, 757, 1360
BsiHKAI GWGCWC 3 cut(s) 747, 1639, 1902
BsiHKCI CYCGRG 2 cut(s) 215, 290
BsiSI CCGG 2 cut(s) 29, 1071
BslFI GGGAC 2 cut(s) 1329, 1660
BslI CCNNNNNNNGG 8 cut(s) 33, 34, 220, 261, 295, 1796, 2139, 2255
BsmAI GTCTC 5 cut(s) 451, 1512, 1965, 2089, 2224
BsmBI CGTCTC 1 cut(s) 2224
BsmFI GGGAC 2 cut(s) 1329, 1660
BsmI GAATGC 3 cut(s) 905, 1213, 1279
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 451
BsoBI CYCGRG 2 cut(s) 215, 290
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 4 cut(s) 40, 747, 1639, 1902
Bsp143I GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
Bsp68I TCGCGA 1 cut(s) 91
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 8 cut(s) 190, 490, 599, 991, 1063, 1763, 1888, 1979
BspDI ATCGAT 3 cut(s) 194, 757, 1360
BspFNI CGCG 2 cut(s) 91, 305
BspLI GGNNCC 5 cut(s) 38, 85, 371, 876, 1474
BspMAI CTGCAG 2 cut(s) 1297, 1654
BspMI ACCTGC 1 cut(s) 2053
BspPI GGATC 4 cut(s) 335, 411, 753, 1946
BspQI GCTCTTC 1 cut(s) 2150
BspT107I GGYRCC 1 cut(s) 1472
BspTNI GGTCTC 1 cut(s) 451
BsrI ACTGG 7 cut(s) 373, 547, 912, 1126, 1479, 1594, 2037
BssMI GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
BssNI GRCGYC 3 cut(s) 252, 2130, 2236
BssT1I CCWWGG 5 cut(s) 231, 417, 441, 766, 2124
Bst2UI CCWGG 5 cut(s) 575, 1791, 1846, 2045, 2162
Bst4CI ACNGT 2 cut(s) 1600, 1834
Bst6I CTCTTC 1 cut(s) 2150
BstACI GRCGYC 3 cut(s) 252, 2130, 2236
BstAPI GCANNNNNTGC 1 cut(s) 1267
BstC8I GCNNGC 7 cut(s) 211, 437, 473, 699, 971, 1059, 2060
BstEII GGTNACC 1 cut(s) 554
BstFNI CGCG 2 cut(s) 91, 305
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 8 cut(s) 330, 406, 688, 761, 1360, 1364, 1721, 1954
BstMAI GTCTC 5 cut(s) 451, 1512, 1965, 2089, 2224
BstMBI GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
BstNI CCWGG 5 cut(s) 575, 1791, 1846, 2045, 2162
BstNSI RCATGY 3 cut(s) 530, 973, 1892
BstPAI GACNNNNGTC 1 cut(s) 552
BstPI GGTNACC 1 cut(s) 554
BstSCI CCNGG 6 cut(s) 27, 573, 1789, 1844, 2043, 2160
BstSFI CTRYAG 2 cut(s) 1293, 1650
BstSLI GKGCMC 2 cut(s) 40, 1639
BstUI CGCG 2 cut(s) 91, 305
BstV1I GCAGC 8 cut(s) 348, 713, 1066, 1240, 1264, 1279, 1307, 1417
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 685, 1718
BstXI CCANNNNNNTGG 5 cut(s) 238, 935, 1022, 2032, 2051
BstYI RGATCY 2 cut(s) 685, 1718
Bsu15I ATCGAT 3 cut(s) 194, 757, 1360
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 1 cut(s) 38
BsuTUI ATCGAT 3 cut(s) 194, 757, 1360
BtrI CACGTC 1 cut(s) 1319
BtsIMutI CAGTG 5 cut(s) 540, 996, 1360, 1486, 1639
BtuMI TCGCGA 1 cut(s) 91
BveI ACCTGC 1 cut(s) 2053
Cac8I GCNNGC 7 cut(s) 211, 437, 473, 699, 971, 1059, 2060
CfoI GCGC 1 cut(s) 954
Cfr13I GGNCC 5 cut(s) 36, 37, 286, 848, 874
ClaI ATCGAT 3 cut(s) 194, 757, 1360
CseI GACGC 5 cut(s) 260, 294, 311, 1240, 2138
Csp6I GTAC 3 cut(s) 1104, 1119, 1892
CviAII CATG 9 cut(s) 8, 184, 455, 527, 970, 1463, 1889, 1936, 2152
CviQI GTAC 3 cut(s) 1104, 1119, 1892
DpnI GATC 8 cut(s) 329, 405, 687, 760, 1359, 1363, 1720, 1953
DpnII GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
Eam1104I CTCTTC 1 cut(s) 2150
EarI CTCTTC 1 cut(s) 2150
EciI GGCGGA 4 cut(s) 9, 906, 1864, 1989
Eco130I CCWWGG 5 cut(s) 231, 417, 441, 766, 2124
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 451
Eco47I GGWCC 3 cut(s) 286, 848, 874
Eco57I CTGAAG 4 cut(s) 825, 1328, 1356, 1707
Eco81I CCTNAGG 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 215, 290
Eco91I GGTNACC 1 cut(s) 554
EcoO109I RGGNCCY 3 cut(s) 36, 286, 874
EcoO65I GGTNACC 1 cut(s) 554
EcoRI GAATTC 3 cut(s) 140, 837, 1003
EcoRII CCWGG 5 cut(s) 573, 1789, 1844, 2043, 2160
EcoT14I CCWWGG 5 cut(s) 231, 417, 441, 766, 2124
EcoT22I ATGCAT 2 cut(s) 971, 975
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 5 cut(s) 231, 417, 441, 766, 2124
Esp3I CGTCTC 1 cut(s) 2224
FaeI CATG 9 cut(s) 11, 187, 458, 530, 973, 1466, 1892, 1939, 2155
FalI AAGNNNNNCTT 5 cut(s) 434, 466, 1979, 2011, 2257
FaqI GGGAC 2 cut(s) 1329, 1660
FatI CATG 9 cut(s) 7, 183, 454, 526, 969, 1462, 1888, 1935, 2151
FauI CCCGC 2 cut(s) 377, 1080
FriOI GRGCYC 1 cut(s) 40
FspBI CTAG 5 cut(s) 56, 432, 1515, 1620, 2189
GlaI GCGC 1 cut(s) 953
GsaI CCCAGC 1 cut(s) 2142
GsuI CTGGAG 4 cut(s) 929, 1462, 1611, 2054
HaeIII GGCC 1 cut(s) 38
HapII CCGG 2 cut(s) 29, 1071
HgaI GACGC 5 cut(s) 260, 294, 311, 1240, 2138
HhaI GCGC 1 cut(s) 954
Hin1I GRCGYC 3 cut(s) 252, 2130, 2236
Hin1II CATG 9 cut(s) 11, 187, 458, 530, 973, 1466, 1892, 1939, 2155
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 4 cut(s) 665, 830, 1981, 2241
HinfI GANTC 8 cut(s) 16, 93, 191, 913, 1382, 1574, 1883, 2048
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 2 cut(s) 29, 1071
HphI GGTGA 7 cut(s) 548, 557, 1213, 1416, 1418, 1830, 2077
Hpy166II GTNNAC 6 cut(s) 277, 301, 313, 502, 946, 1637
Hpy188I TCNGA 7 cut(s) 408, 1308, 1336, 1366, 1804, 1819, 1969
Hpy188III TCNNGA 9 cut(s) 90, 105, 217, 292, 331, 479, 593, 1386, 1987
Hpy8I GTNNAC 6 cut(s) 277, 301, 313, 502, 946, 1637
Hpy99I CGWCG 6 cut(s) 140, 208, 284, 310, 365, 2238
HpyCH4III ACNGT 2 cut(s) 1600, 1834
HpyCH4IV ACGT 2 cut(s) 1318, 2236
HpySE526I ACGT 2 cut(s) 1318, 2236
Hsp92I GRCGYC 3 cut(s) 252, 2130, 2236
Hsp92II CATG 9 cut(s) 11, 187, 458, 530, 973, 1466, 1892, 1939, 2155
HspAI GCGC 1 cut(s) 952
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
LguI GCTCTTC 1 cut(s) 2150
LmnI GCTCC 9 cut(s) 51, 89, 333, 694, 742, 1438, 1592, 1708, 1762
Lsp1109I GCAGC 8 cut(s) 348, 713, 1066, 1240, 1264, 1279, 1307, 1417
LweI GCATC 9 cut(s) 774, 982, 1158, 1240, 1340, 1379, 1566, 1663, 1931
MaeI CTAG 5 cut(s) 56, 432, 1515, 1620, 2189
MaeII ACGT 2 cut(s) 1318, 2236
MaeIII GTNAC 5 cut(s) 545, 554, 1528, 1585, 1828
MalI GATC 8 cut(s) 329, 405, 687, 760, 1359, 1363, 1720, 1953
MboI GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 2 cut(s) 685, 1718
MhlI GDGCHC 4 cut(s) 40, 747, 1639, 1902
MluI ACGCGT 1 cut(s) 303
MlyI GAGTC 2 cut(s) 10, 102
MmeI TCCRAC 2 cut(s) 1477, 1686
Mph1103I ATGCAT 2 cut(s) 971, 975
MroXI GAANNNNTTC 1 cut(s) 1798
MseI TTAA 8 cut(s) 321, 489, 501, 720, 1044, 1190, 1401, 2281
MslI CAYNNNNRTG 3 cut(s) 978, 1020, 1467
MspA1I CMGCKG 1 cut(s) 1430
MspI CCGG 2 cut(s) 29, 1071
MspR9I CCNGG 6 cut(s) 29, 575, 1791, 1846, 2045, 2162
MunI CAATTG 1 cut(s) 41
Mva1269I GAATGC 3 cut(s) 905, 1213, 1279
MvaI CCWGG 5 cut(s) 575, 1791, 1846, 2045, 2162
MvnI CGCG 2 cut(s) 91, 305
NciI CCSGG 1 cut(s) 29
NdeII GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
NlaIII CATG 9 cut(s) 11, 187, 458, 530, 973, 1466, 1892, 1939, 2155
NlaIV GGNNCC 5 cut(s) 38, 85, 371, 876, 1474
NmuCI GTSAC 2 cut(s) 545, 554
NruI TCGCGA 1 cut(s) 91
NsiI ATGCAT 2 cut(s) 971, 975
NspI RCATGY 3 cut(s) 530, 973, 1892
PaeI GCATGC 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 2053
PciI ACATGT 1 cut(s) 1888
PciSI GCTCTTC 1 cut(s) 2150
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 288
PctI GAATGC 3 cut(s) 905, 1213, 1279
PdmI GAANNNNTTC 1 cut(s) 1798
PfeI GAWTC 6 cut(s) 191, 913, 1382, 1574, 1883, 2048
PflFI GACNNNGTC 3 cut(s) 284, 412, 2235
PleI GAGTC 2 cut(s) 10, 101
PpsI GAGTC 2 cut(s) 10, 101
PpuMI RGGWCCY 2 cut(s) 286, 874
PscI ACATGT 1 cut(s) 1888
PshAI GACNNNNGTC 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 1401
PsiI TTATAA 1 cut(s) 1868
Psp5II RGGWCCY 2 cut(s) 286, 874
Psp6I CCWGG 5 cut(s) 573, 1789, 1844, 2043, 2160
PspEI GGTNACC 1 cut(s) 554
PspFI CCCAGC 1 cut(s) 2138
PspGI CCWGG 5 cut(s) 573, 1789, 1844, 2043, 2160
PspN4I GGNNCC 5 cut(s) 38, 85, 371, 876, 1474
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 5 cut(s) 36, 37, 286, 848, 874
PspPPI RGGWCCY 2 cut(s) 286, 874
PstI CTGCAG 2 cut(s) 1297, 1654
PsuI RGATCY 2 cut(s) 685, 1718
PsyI GACNNNGTC 3 cut(s) 284, 412, 2235
PvuII CAGCTG 1 cut(s) 1430
RruI TCGCGA 1 cut(s) 91
RsaI GTAC 3 cut(s) 1105, 1120, 1893
RsaNI GTAC 3 cut(s) 1104, 1119, 1892
RseI CAYNNNNRTG 3 cut(s) 978, 1020, 1467
SapI GCTCTTC 1 cut(s) 2150
SaqAI TTAA 8 cut(s) 321, 489, 501, 720, 1044, 1190, 1401, 2281
Sau3AI GATC 8 cut(s) 327, 403, 685, 758, 1357, 1361, 1718, 1951
Sau96I GGNCC 5 cut(s) 36, 37, 286, 848, 874
ScaI AGTACT 1 cut(s) 1120
SchI GAGTC 2 cut(s) 10, 102
ScrFI CCNGG 6 cut(s) 29, 575, 1791, 1846, 2045, 2162
SduI GDGCHC 4 cut(s) 40, 747, 1639, 1902
SfaNI GCATC 9 cut(s) 774, 982, 1158, 1240, 1340, 1379, 1566, 1663, 1931
SfcI CTRYAG 2 cut(s) 1293, 1650
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 3 cut(s) 286, 848, 874
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 3 cut(s) 978, 1020, 1467
SmlI CTYRAG 3 cut(s) 290, 689, 1978
SmoI CTYRAG 3 cut(s) 290, 689, 1978
SphI GCATGC 1 cut(s) 973
SspMI CTAG 5 cut(s) 56, 432, 1515, 1620, 2189
StyD4I CCNGG 6 cut(s) 27, 573, 1789, 1844, 2043, 2160
StyI CCWWGG 5 cut(s) 231, 417, 441, 766, 2124
TaaI ACNGT 2 cut(s) 1600, 1834
TaiI ACGT 2 cut(s) 1321, 2239
TaqI TCGA 9 cut(s) 135, 156, 189, 194, 291, 537, 757, 1152, 1360
TaqII GACCGA 1 cut(s) 836
TatI WGTACW 1 cut(s) 1118
TauI GCSGC 2 cut(s) 2005, 2090
TfiI GAWTC 6 cut(s) 191, 913, 1382, 1574, 1883, 2048
Tru1I TTAA 8 cut(s) 321, 489, 501, 720, 1044, 1190, 1401, 2281
Tru9I TTAA 8 cut(s) 321, 489, 501, 720, 1044, 1190, 1401, 2281
TscAI CASTG 5 cut(s) 547, 1003, 1360, 1486, 1639
TseFI GTSAC 2 cut(s) 545, 554
TseI GCWGC 8 cut(s) 336, 701, 1054, 1228, 1277, 1292, 1295, 1430
Tsp45I GTSAC 2 cut(s) 545, 554
TspGWI ACGGA 1 cut(s) 2267
TspRI CASTG 5 cut(s) 547, 1003, 1360, 1486, 1639
Tth111I GACNNNGTC 3 cut(s) 284, 412, 2235
VneI GTGCAC 1 cut(s) 1635
VpaK11BI GGWCC 3 cut(s) 286, 848, 874
VspI ATTAAT 1 cut(s) 1401
XapI RAATTY 6 cut(s) 140, 725, 789, 837, 1003, 1667
XceI RCATGY 3 cut(s) 530, 973, 1892
XcmI CCANNNNNNNNNTGG 1 cut(s) 2051
XhoI CTCGAG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 1798
XspI CTAG 5 cut(s) 56, 432, 1515, 1620, 2189
ZraI GACGTC 1 cut(s) 2237
ZrmI AGTACT 1 cut(s) 1120
Zsp2I ATGCAT 2 cut(s) 971, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.