Rh4BG043300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004155
Physical Location & Seq
Reverse (-)
7794938 .. 7797003
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG043300.1

Sequence Viewer

Length: 261 bp
ATGCCAGTCTTCAACGCGAGCTTCAACCGATCTAGCCAGGTGTCGTCATTTAGGGCTTTGGAGGTTGAGGGATTGGCGGAGATGGTGGTGGTAGCGGCGGCGTTAGGGCTCGGGGCTCTCAACATGAAGGCAGATCAGGTGAGGTTCGATTCAAGTCTGGGAGGTGGCCGGAGCGGTCCAAGTCGCGGCGGAGGACGAGGAGTTAGTGGTGGAAAGACGGTGGCTTTTGCAGATTGTGATCGGTTCAGAGCGCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

8.82

Weight (kDa)

10.01

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 174
AccII CGCG 2 cut(s) 17, 186
AciI CCGC 6 cut(s) 77, 95, 98, 174, 186, 189
AcoI YGGCCR 1 cut(s) 166
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 3 cut(s) 13, 25, 153
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 151, 247
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 1 cut(s) 176
BanII GRGCYC 2 cut(s) 111, 118
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 3 cut(s) 96, 99, 187
BlsI GCNGC 3 cut(s) 97, 100, 188
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 5
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 17, 186
BshFI GGCC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 111, 118
Bsp143I GATC 3 cut(s) 29, 133, 238
BspACI CCGC 6 cut(s) 77, 95, 98, 174, 186, 189
BspANI GGCC 1 cut(s) 168
BspFNI CGCG 2 cut(s) 17, 186
BsrBI CCGCTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 5
BssMI GATC 3 cut(s) 29, 133, 238
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 19
BstFNI CGCG 2 cut(s) 17, 186
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 32, 136, 241
BstMBI GATC 3 cut(s) 29, 133, 238
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstUI CGCG 2 cut(s) 17, 186
BsuRI GGCC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 1 cut(s) 124
CviJI RGCY 7 cut(s) 21, 36, 56, 109, 116, 168, 224
CviKI_1 RGCY 7 cut(s) 21, 36, 56, 109, 116, 168, 224
DpnI GATC 3 cut(s) 31, 135, 240
DpnII GATC 3 cut(s) 29, 133, 238
EaeI YGGCCR 1 cut(s) 166
EciI GGCGGA 2 cut(s) 92, 204
Eco24I GRGCYC 2 cut(s) 111, 118
Eco47I GGWCC 1 cut(s) 176
Eco47III AGCGCT 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 111, 118
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 96, 99, 187
FriOI GRGCYC 2 cut(s) 111, 118
Fsp4HI GCNGC 3 cut(s) 96, 99, 187
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 252
GluI GCNGC 3 cut(s) 96, 99, 187
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 169
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 151, 247
Hpy188I TCNGA 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 29, 133, 238
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 6 cut(s) 18, 23, 50, 122, 143, 182
MaeI CTAG 1 cut(s) 33
MalI GATC 3 cut(s) 31, 135, 240
MbiI CCGCTC 1 cut(s) 174
MboI GATC 3 cut(s) 29, 133, 238
MhlI GDGCHC 2 cut(s) 111, 118
MnlI CCTC 6 cut(s) 55, 61, 135, 155, 185, 191
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 17, 186
NdeII GATC 3 cut(s) 29, 133, 238
NlaIII CATG 1 cut(s) 127
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 97, 100, 188
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspPI GGNCC 1 cut(s) 176
SatI GCNGC 3 cut(s) 96, 99, 187
Sau3AI GATC 3 cut(s) 29, 133, 238
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 111, 118
SetI ASST 7 cut(s) 23, 42, 66, 141, 146, 166, 260
SinI GGWCC 1 cut(s) 176
SsiI CCGC 6 cut(s) 77, 95, 98, 174, 186, 189
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 147
TauI GCSGC 3 cut(s) 98, 101, 189
TfiI GAWTC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.