RLG00000022993

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004155
Physical Location & Seq
Reverse (-)
16375717 .. 16376109
393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022993

Sequence Viewer

Length: 318 bp
ATGCTCCAATCGATTGGGTCGTCGGCAAGACTCAATTTCCAGCAGGATTTGGATTTGGAGGACACCTATGATTGGCTGGTTAATGTCAACGATGAGGTCCTGGAGAGGGTGGACGTGTCAGTGGATGAATTTAAGAGGTGCAGCAGCAGCAAGGAGAAGGAAGATGACGGTTCCAGTTGTTCTTTGGAGGCTGAGGGGTTGACGGAGGTAGTGGCCGTAGCGGCGGCGTTAGGGCTCGGGGCTCTCAACAAGAAGGCACAGATGAGGTTCGATTCGAGTCCGGATGTGTCGATTTCATTACTCGGGGCTCTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

106

Amino Acids

11.36

Weight (kDa)

4.16

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMC2NT PF08066 1 - 45 1e-05 PMC2NT (NUC016) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 221, 224
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 72, 106
AflIII ACRYGT 1 cut(s) 114
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 99
Ama87I CYCGRG 2 cut(s) 236, 302
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 141, 144, 147
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 97
AvaI CYCGRG 2 cut(s) 236, 302
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 3 cut(s) 237, 244, 310
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 153, 156, 159
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 5 cut(s) 142, 145, 148, 222, 225
BlsI GCNGC 5 cut(s) 143, 146, 149, 223, 226
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 236, 302
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 106
Bse1I ACTGG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 11
BseGI GGATG 2 cut(s) 130, 289
BseLI CCNNNNNNNGG 2 cut(s) 72, 106
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 153, 156, 159
BsgI GTGCAG 1 cut(s) 160
BshFI GGCC 1 cut(s) 215
BshVI ATCGAT 1 cut(s) 11
BsiHKCI CYCGRG 2 cut(s) 236, 302
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 72, 106
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 2 cut(s) 236, 302
Bsp1286I GDGCHC 3 cut(s) 237, 244, 310
Bsp13I TCCGGA 1 cut(s) 280
BspACI CCGC 2 cut(s) 221, 224
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 184
BspDI ATCGAT 1 cut(s) 11
BspEI TCCGGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 130, 289
BstMWI GCNNNNNNNGC 2 cut(s) 147, 221
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 153, 156, 159
BstXI CCANNNNNNTGG 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 11
BsuRI GGCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 11
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 130, 289
BtsIMutI CAGTG 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 11
CviJI RGCY 6 cut(s) 76, 191, 215, 235, 242, 308
CviKI_1 RGCY 6 cut(s) 76, 191, 215, 235, 242, 308
DdeI CTNAG 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 213
Eco24I GRGCYC 3 cut(s) 237, 244, 310
Eco47I GGWCC 1 cut(s) 97
Eco88I CYCGRG 2 cut(s) 236, 302
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 3 cut(s) 237, 244, 310
FaiI YATR 1 cut(s) 69
Fnu4HI GCNGC 5 cut(s) 142, 145, 148, 222, 225
FokI GGATG 2 cut(s) 137, 296
FriOI GRGCYC 3 cut(s) 237, 244, 310
Fsp4HI GCNGC 5 cut(s) 142, 145, 148, 222, 225
GluI GCNGC 5 cut(s) 142, 145, 148, 222, 225
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 281
HincII GTYRAC 2 cut(s) 88, 201
HindII GTYRAC 2 cut(s) 88, 201
HinfI GANTC 3 cut(s) 30, 272, 277
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 3 cut(s) 88, 112, 201
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 88, 112, 201
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 151, 247
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 221
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 280
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 29, 53, 62, 86, 113, 187, 294
Lsp1109I GCAGC 3 cut(s) 153, 156, 159
MaeII ACGT 1 cut(s) 114
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 3 cut(s) 237, 244, 310
MluCI AATT 2 cut(s) 34, 128
MlyI GAGTC 2 cut(s) 24, 286
MnlI CCTC 8 cut(s) 52, 88, 99, 129, 181, 187, 199, 258
MroI TCCGGA 1 cut(s) 280
MseI TTAA 2 cut(s) 81, 132
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 147, 221
NlaIV GGNNCC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 5 cut(s) 143, 146, 149, 223, 226
PleI GAGTC 2 cut(s) 24, 285
PpsI GAGTC 2 cut(s) 24, 285
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
SaqAI TTAA 2 cut(s) 81, 132
SatI GCNGC 5 cut(s) 142, 145, 148, 222, 225
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 2 cut(s) 24, 286
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 237, 244, 310
SetI ASST 6 cut(s) 68, 99, 117, 140, 210, 269
SinI GGWCC 1 cut(s) 97
Sse9I AATT 2 cut(s) 34, 128
SsiI CCGC 2 cut(s) 221, 224
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 117
TaqI TCGA 4 cut(s) 11, 270, 275, 290
TasI AATT 2 cut(s) 34, 128
TauI GCSGC 2 cut(s) 224, 227
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 81, 132
Tru9I TTAA 2 cut(s) 81, 132
TscAI CASTG 1 cut(s) 126
TseI GCWGC 3 cut(s) 141, 144, 147
TspDTI ATGAA 2 cut(s) 141, 285
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.