pycom14g00510

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0004155
Physical Location & Seq
Forward (+)
346050 .. 347378
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g00510.1

Sequence Viewer

Length: 903 bp
ATGGAGTATAAGGGAATTGCATTTGGTGCCTCTGAACTTGTAAGAAATGGACAAGGAAACTCTCCTGAAACTGGCAGTCCCATTTCGGTGAATCTTAGGCAGAACAGTGTTCCAGGACAAAGCAGAGAAGCAAGGAGCAATGCCTGTTTATTGGATTCAGCAAAGGTTACTGGAGTAAGTGTTCAGGTGCAAAAGAAGCCCAGCCGTGCCTTTAGTTCACTGTTGGGGAGTGCAGTTCCAAAAAGGAAGGTCGATGTCGATAAAAAGGGCAAGGAAGATAATAAGTTGGAACAAATTAGATCTTCAGTGAACTTCCCATTCCACTCATTTTCGGGCAGGAGTGAGAAATCCAAACCAACCTTGGAAGCACGAGATAAAAGTTCAGAAACTCCCCATTCTGAAGGGCCGCTTCCTGCATCACCCTCTGGTTCTGGTTTAGGTGACATCATAACATTGGAAAATGATTCAGATGGAGGTGAACCGGTAGATGGTTCCTCAGAAACCAGAAATGAGCCGGAGGAGAATGATTCGGTACCATCTGCTTTGGGGAGGGATGGGGAAGACGAACCCGTGTCTCTCTCTGATTTGTCGTCGAGCTTCCAAAAATGCTTTCAGTCGCTTAACCAAAACAGGAAGACAAGAGAAGTGGAGAAGTCCCAGGAATCTGGTGGTTTGCAGGTGAAGCCTTTCGACTATGAGGCAGCAAAGAGTCGGGTCATATTCGGAGCTAAGCCGGTCAGAGAGGCTGGAGCTGGGGAAGGTGTGAAGAGCTTAAACTCAGCGGGAAAGAAAAAATCTTTAGCTGGTCTAGTTTCAAACGATGACGGGTCAAAAGAACTAGGACAGGGTAGACGACGCCAAGCTTTTCCAGCAACCGGAAATAGAAGTGCGACATTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

301

Amino Acids

31.91

Weight (kDa)

8.73

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
Acc65I GGTACC 1 cut(s) 532
AccB1I GGYRCC 2 cut(s) 26, 532
AccI GTMKAC 1 cut(s) 850
AciI CCGC 2 cut(s) 407, 782
AcuI CTGAAG 2 cut(s) 288, 420
AcyI GRCGYC 1 cut(s) 856
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 3 cut(s) 71, 488, 875
AgeI ACCGGT 1 cut(s) 481
AgsI TTSAA 1 cut(s) 816
AjnI CCWGG 2 cut(s) 112, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 6 cut(s) 597, 728, 752, 771, 803, 863
AluI AGCT 6 cut(s) 597, 728, 752, 771, 803, 863
Alw26I GTCTC 1 cut(s) 579
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 701
AsiGI ACCGGT 1 cut(s) 481
Asp700I GAANNNNTTC 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 5 cut(s) 100, 411, 452, 488, 691
BanI GGYRCC 2 cut(s) 26, 532
BauI CACGAG 1 cut(s) 369
BbsI GAAGAC 2 cut(s) 567, 641
BbvI GCAGC 1 cut(s) 713
BccI CCATC 4 cut(s) 464, 482, 544, 548
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 2 cut(s) 114, 659
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 2 cut(s) 809, 839
BfuAI ACCTGC 1 cut(s) 667
BglII AGATCT 1 cut(s) 299
BisI GCNGC 2 cut(s) 407, 702
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 2 cut(s) 408, 703
Bme1390I CCNGG 2 cut(s) 114, 659
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 3 cut(s) 28, 493, 534
BmrFI CCNGG 2 cut(s) 114, 659
BmsI GCATC 1 cut(s) 425
BpiI GAAGAC 2 cut(s) 567, 641
BpmI CTGGAG 2 cut(s) 192, 768
Bpu1102I GCTNAGC 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 2 cut(s) 360, 657
BsaWI WCCGGW 2 cut(s) 481, 875
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 488, 875
Bse118I RCCGGY 2 cut(s) 481, 733
Bse1I ACTGG 2 cut(s) 76, 175
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 114, 659
BseDI CCNNGG 2 cut(s) 360, 657
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 3 cut(s) 71, 488, 875
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 510, 792
BseNI ACTGG 2 cut(s) 76, 175
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 1 cut(s) 713
BseYI CCCAGC 2 cut(s) 200, 752
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 406
BshNI GGYRCC 2 cut(s) 26, 532
BshTI ACCGGT 1 cut(s) 481
BsiSI CCGG 4 cut(s) 482, 515, 734, 876
BslFI GGGAC 2 cut(s) 63, 640
BslI CCNNNNNNNGG 3 cut(s) 71, 488, 875
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 63, 640
BsnI GGCC 1 cut(s) 406
Bsp143I GATC 1 cut(s) 299
Bsp1720I GCTNAGC 1 cut(s) 729
BspACI CCGC 2 cut(s) 407, 782
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 509, 791
BspLI GGNNCC 3 cut(s) 28, 493, 534
BspMI ACCTGC 1 cut(s) 667
BspQI GCTCTTC 1 cut(s) 761
BspT107I GGYRCC 2 cut(s) 26, 532
BsrDI GCAATG 1 cut(s) 145
BsrFI RCCGGY 2 cut(s) 481, 733
BsrI ACTGG 2 cut(s) 76, 175
BssAI RCCGGY 2 cut(s) 481, 733
BssECI CCNNGG 2 cut(s) 360, 657
BssMI GATC 1 cut(s) 299
BssNI GRCGYC 1 cut(s) 856
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 114, 659
Bst4CI ACNGT 2 cut(s) 107, 222
Bst6I CTCTTC 1 cut(s) 761
BstACI GRCGYC 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 26
BstDEI CTNAG 4 cut(s) 95, 496, 729, 778
BstF5I GGATG 1 cut(s) 559
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 4 cut(s) 26, 196, 682, 869
BstNI CCWGG 2 cut(s) 114, 659
BstSCI CCNGG 2 cut(s) 112, 657
BstV1I GCAGC 1 cut(s) 713
BstV2I GAAGAC 2 cut(s) 567, 641
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 559
BtsIMutI CAGTG 3 cut(s) 112, 218, 312
BveI ACCTGC 1 cut(s) 667
Cfr10I RCCGGY 2 cut(s) 481, 733
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 1 cut(s) 864
Csp6I GTAC 1 cut(s) 533
CspAI ACCGGT 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 4 cut(s) 95, 496, 729, 778
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 360
Eco57I CTGAAG 2 cut(s) 288, 420
EcoRII CCWGG 2 cut(s) 112, 657
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaiI YATR 4 cut(s) 9, 449, 696, 719
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 2 cut(s) 63, 640
FauI CCCGC 1 cut(s) 775
FblI GTMKAC 1 cut(s) 850
Fnu4HI GCNGC 2 cut(s) 407, 702
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 2 cut(s) 407, 702
FspBI CTAG 2 cut(s) 809, 839
GluI GCNGC 2 cut(s) 407, 702
GsaI CCCAGC 2 cut(s) 204, 756
GsuI CTGGAG 2 cut(s) 192, 768
HaeIII GGCC 1 cut(s) 406
HapII CCGG 4 cut(s) 482, 515, 734, 876
HgaI GACGC 1 cut(s) 864
Hin1I GRCGYC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 861
HinfI GANTC 6 cut(s) 91, 155, 464, 527, 662, 709
HpaII CCGG 4 cut(s) 482, 515, 734, 876
HphI GGTGA 5 cut(s) 100, 411, 452, 488, 691
Hpy166II GTNNAC 4 cut(s) 218, 310, 479, 851
Hpy188I TCNGA 8 cut(s) 34, 385, 400, 469, 499, 583, 725, 740
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 4 cut(s) 218, 310, 479, 851
Hpy99I CGWCG 2 cut(s) 595, 858
HpyAV CCTTC 3 cut(s) 241, 395, 752
HpyCH4III ACNGT 2 cut(s) 107, 222
HpyCH4V TGCA 5 cut(s) 20, 190, 233, 416, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 196, 682, 869
HpyF3I CTNAG 4 cut(s) 95, 496, 729, 778
Hsp92I GRCGYC 1 cut(s) 856
KpnI GGTACC 1 cut(s) 536
Kzo9I GATC 1 cut(s) 299
LguI GCTCTTC 1 cut(s) 761
LmnI GCTCC 3 cut(s) 135, 725, 749
Lsp1109I GCAGC 1 cut(s) 713
LweI GCATC 1 cut(s) 425
MaeI CTAG 2 cut(s) 809, 839
MaeIII GTNAC 2 cut(s) 166, 440
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 5 cut(s) 287, 294, 572, 646, 778
MflI RGATCY 1 cut(s) 299
MluCI AATT 2 cut(s) 15, 294
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 8 cut(s) 40, 433, 467, 505, 511, 543, 691, 736
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 3 cut(s) 621, 773, 901
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 4 cut(s) 482, 515, 734, 876
MspR9I CCNGG 2 cut(s) 114, 659
MvaI CCWGG 2 cut(s) 114, 659
MwoI GCNNNNNNNGC 4 cut(s) 26, 196, 682, 869
NdeII GATC 1 cut(s) 299
NlaIV GGNNCC 3 cut(s) 28, 493, 534
NmuCI GTSAC 1 cut(s) 440
PaqCI CACCTGC 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 761
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 5 cut(s) 91, 155, 464, 527, 662
PfoI TCCNGGA 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 481
PkrI GCNGC 2 cut(s) 408, 703
PleI GAGTC 1 cut(s) 717
PpsI GAGTC 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 112, 657
PspFI CCCAGC 2 cut(s) 200, 752
PspGI CCWGG 2 cut(s) 112, 657
PspN4I GGNNCC 3 cut(s) 28, 493, 534
PspPI GGNCC 1 cut(s) 404
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 761
SaqAI TTAA 3 cut(s) 621, 773, 901
SatI GCNGC 2 cut(s) 407, 702
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 2 cut(s) 114, 659
SfaNI GCATC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 2 cut(s) 15, 294
SsiI CCGC 2 cut(s) 407, 782
SspMI CTAG 2 cut(s) 809, 839
StyD4I CCNGG 2 cut(s) 112, 657
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 107, 222
TaqI TCGA 4 cut(s) 252, 258, 593, 690
TasI AATT 2 cut(s) 15, 294
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 5 cut(s) 91, 155, 464, 527, 662
Tru1I TTAA 3 cut(s) 621, 773, 901
Tru9I TTAA 3 cut(s) 621, 773, 901
TscAI CASTG 3 cut(s) 112, 225, 312
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 440
TspRI CASTG 3 cut(s) 112, 225, 312
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 665
XmiI GTMKAC 1 cut(s) 850
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 2 cut(s) 809, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.