Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004155

Physical Location & Seq

Genomic Coordinates Forward (+)

33984177 .. 33984419

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG317600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCTCCAATCGATTGGGTCGTCAGCAAGCCTCAGTTTCCAGCAGGATTTGGATCTGGAGGATGCCTATGATTGGCTGGTTAATGTCAATGATGAGGTCCTAGAGAGGGTGGACGAGTTTAGAGGAGCAGCAGCAGCAAGGAGAAGGAAGACGACGATTCCAGTTGGTGTGTGGAAAGAAGAAGAAAAAGGGGATAAGAGTAATCCGAGCTTGTCCAAGGACAACAAGACTAGCATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

80

Amino Acids

8.99

Weight (kDa)

4.68

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54440 AT1G54440 AT1G54440 AT1G54440 AT1G54440 AT5G35910
fragaria_vesca	FvH4_1g28500 FvH4_1g28500
malus_domestica	MD12G1009000.v1.1 MD14G1006500.v1.1
prunus_persica	Prupe.7G010800_v2.0.a1
pyrus_communis	pycom12g00680 pycom12g00690 pycom14g00500 pycom14g00510
rosa_chinensis	RchiOBHm_Chr3g0496311 RchiOBHm_Chr3g0496321 RchiOBHm_Chr4g0394611
rosa_laevigata	RLG00000022537 RLG00000022993
rosa_multiflora	Rmu_co8388783.1_g000001 Rmu_sc0000333.1_g000028
rosa_roxburghii	Rroxscaffold_4G00327980 Rroxscaffold_6G00389270
rosa_rugosa	Rorug03G0281600
rosa_samantha	Rh3AG271600 Rh3AG328400 Rh3BG364500 Rh3CG317600 Rh3CG361500 Rh3DG364500 Rh4BG043300
rosa_wichuraiana	Rw3G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	72, 106
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
AlwI	GGATC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	128, 131, 134
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	140, 143, 146
BfaI	CTAG	2 cut(s)	101, 231
BisI	GCNGC	3 cut(s)	129, 132, 135
BlsI	GCNGC	3 cut(s)	130, 133, 136
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 106
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	72, 106
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	140, 143, 146
BshVI	ATCGAT	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	72, 106
Bsp143I	GATC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	11
BspPI	GGATC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	140, 143, 146
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	11
CviJI	RGCY	3 cut(s)	30, 76, 210
CviKI_1	RGCY	3 cut(s)	30, 76, 210
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaiI	YATR	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	129, 132, 135
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	129, 132, 135
FspBI	CTAG	2 cut(s)	101, 231
GluI	GCNGC	3 cut(s)	129, 132, 135
GsuI	CTGGAG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	9, 125
LpnPI	CCDG	5 cut(s)	29, 41, 53, 62, 174
Lsp1109I	GCAGC	3 cut(s)	140, 143, 146
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	101, 231
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	160, 191, 194
MflI	RGATCY	1 cut(s)	52
MnlI	CCTC	5 cut(s)	41, 52, 88, 99, 116
MseI	TTAA	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	130, 133, 136
PpuMI	RGGWCCY	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	97
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	129, 132, 135
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	97
SetI	ASST	2 cut(s)	99, 212
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	97
SspMI	CTAG	2 cut(s)	101, 231
StyI	CCWWGG	1 cut(s)	216
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	3 cut(s)	128, 131, 134
VpaK11BI	GGWCC	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	2 cut(s)	101, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.