Rw3G028750

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0004155
Physical Location & Seq
Reverse (-)
43340007 .. 43348249
8243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028750.1

Sequence Viewer

Length: 2553 bp
ATGAGCCATGAGCCGACTCCGCCACCCCCGGCGAGAGCCCAATTGCTCCAAAACCTAGCGACAGCCACAGCGAACCTCTCTGGCTCCTCGCGAGTCATACCTTCGGGAGAGGACTTCTACTACTACCGCAATTTCGACGAATTCAAACTCCCAATCGAAGAAATGGCAAAGCAATCTCAGTCCATGCTCGAATCGATTGGGTCGTCGGCAAGCCTCGGGATGGCTTTCCCCAAGGATTTGGATTTGGAGGACGCCTACGATTGGCTGGTCAATGTGAACGACGAGGTCCTCGAGAGGGTGGACGCGTCGGTGGACGAGTTTAAGAGGATCAGGAGCAGGAACAAGGAGAAGGAAGACGACGAGGGGTTCCAGTTGGTGTGCGGGAAGAAGAAGAAGGGGGATCAGACCTTGTCCAAGGACAGCAAGACTAGCAAGCCCAAGGTCTCCTTTCATGTTCCCTCCATTCGCAAGCCTCAGGAGGAGTTTAACATTCTCGTTAACAATTCAAACCAGCCCTTTGAGCATGTTTGGCTCGACACTGGTGACGATGGTCACCGCTTTCTTCATCCCCTGGCAAAGCTCTCAGTTCTTGATTTTATTGACGATGATATTGGGGGGGTTGAGCCTGTAAAACCGCCAGAAATAGAGGCTACCCCATTCAAGCTTGTGGAGGAGGTCAAAGATCTCAAGGAGCTGGCAGCTAAGTTGCGTGGCGTTAATGAATTTGCGGTTGATTTGGAGCACAACCAATATCGATCCTTCCAAGGATTGACTTGTTTGATGCAAATTTCTACAAGAACTGAAGATTTTATAGTAGATACTTTGAAGCTTAGAATTCATATCGGTCCATATCTTAGGGAAGTTTTCAAGGACCCTTCTAAGAGAAAGGTGATGCATGGAGCAGATCGAGATATTGTGTGGCTCCAACGTGATTTTGGCATTTATATCTGCAATTTGTTTGACACCGGCCAGGCCTCAAGGGTATTGAAATTGGAGAGAAATAGTTTGGAATATCTTTTGCATCACTTTTGTGATGTTTCTGCCAACAAAGAATACCAGAATGCAGACTGGAGATTCCGCCCTCTTACCAAAGAGATGGTCAGATATGCTAGAGAAGATACACACTACCTGTTACACATATATGATTTAATGAGAGCGAAGTTATCTTCCATGCCAAAGGAATCTGAAAACTCTGATGCTCCTTTAGTAGAGGTTTACAGGCGCAGTTATGATATATGCATGCATCTCTATGAGAAGGAAGTTTTCACTGAGAATTCCTATCTCCACATATATGGGTTGCAGGGTGCTTGTTTTAATTCTCAGCAGCTTGCCGTTGTTTCCGGTTTATATGAGTGGCGGGATGTTGTTGCTCGTACAGAGGATGAAAGTACTGGCTATATATTACCAAACAAAACTCTACTCGAACTTGCTAAACAGATGCCTGACACAACTAACAAGTTAAGACGATTGGTGAAATCAAAGCATTCATACATTGAGCAGCATCTTTCTTCTGTTGTTAGCGTCATTAGGCACTCTATGCAGAATGCTGCCTTTTTTGAGGCTGCAGCCGAACATCTGAAGGTGGGACGTGTGGAAATGGCATCTGAAGAAAATGTGTTGGTCAGTGATCGATCTGAACCCTTACCAGATGAATCTGGATGCAATTCAATTAATGGTGATGTATCTGCACCTTCACCAGGTGCTCCGCCTCATAAAGAGGAGTTTAGAGAGCATGGATGTGGTGCCTCCAATGGAGAAGGAAATGTTGGATTTGAAGTTCATCCTAGAGACAACATTGTTACAGGGAAAAGCAGGAAAGGAAGTAGCATTGGCTGTTCCTTAGAATCTGCAAAGGTTACTGGAGCAACTGTTCAGGTGCAAAAGAAGCCTAGTCGTGCTTTCAGTGCACTCTTGGGGACTGCAGTTCCAAAAAGAAAATTTGATGCTGGTGTAAAGGACAAGGAAGATAGTAAGTTGGAGCTGATTAGATCTTCAGTCAATTTCCCATTCCACTCATTCTCAGGTGGGATGGAGCAATCAAATCCCAAGATTGAAGAACCAGGAAAAGGTTCTGAAAATCCCCATTCTGAAATGCCCGTTACTGTATCACCTACCAGGCGGAGTTTAGGAGATATTATAACATTAGAAAATGATTCACATGTACCTGAGCACAAGGAGGATAACTCGGTGGCATCTGCTTTAGGCATGGATGGAGAAGATGATCCTATGTCTCTCTCAGAGTTGTCCTCAAGCTTCAAGAAATGCTTTCCGCCGCCTAATCAAAATAGGAAAGCCAGAGAACTGGAGAAATCCCAGGAATCTGGTGGCTTGCAGGTGAAACCTTTTGACTATGAAGCGGCAAGGAGACAGGTCATATTTGGAGAAAAGACAGCCAAGGACGCCAGAGCTGGGGGAGAAGGCATGAAGAGCCTGGGTTCAAGGGCTAAGAAAAAAACTCTAGTTGATGGGGATGATGGGTCAAAAGAGCTACCTCAAGGGAGACGACGTCAGGCTTTTCCAGCAACAGGAAATAGAAGTGCAACTTTCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

850

Amino Acids

95.37

Weight (kDa)

5.99

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMC2NT PF08066 30 - 108 1e-08 PMC2NT (NUC016) domain
DNA_pol_A_exo1 PF01612 223 - 388 6.3e-47 3'-5' exonuclease
HRDC PF00570 442 - 509 9.4e-14 HRDC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2138
AarI CACCTGC 1 cut(s) 2323
AatII GACGTC 1 cut(s) 2509
Acc36I ACCTGC 1 cut(s) 2323
AccB1I GGYRCC 1 cut(s) 1742
AccII CGCG 2 cut(s) 91, 305
AclWI GGATC 4 cut(s) 335, 408, 750, 2216
AcoI YGGCCR 1 cut(s) 967
AcsI RAATTY 6 cut(s) 140, 722, 786, 834, 1273, 1937
AcuI CTGAAG 4 cut(s) 822, 1598, 1626, 1977
AcyI GRCGYC 3 cut(s) 252, 2400, 2506
AdeI CACNNNGTG 1 cut(s) 1700
AfaI GTAC 3 cut(s) 1375, 1390, 2163
AfiI CCNNNNNNNGG 7 cut(s) 220, 261, 295, 1697, 2066, 2409, 2525
AflIII ACRYGT 3 cut(s) 303, 1588, 2158
AjiI CACGTC 1 cut(s) 1589
AjnI CCWGG 7 cut(s) 570, 969, 1696, 2059, 2114, 2313, 2430
AjuI GAANNNNNNNTTGG 2 cut(s) 1749, 1781
AleI CACNNNNGTG 1 cut(s) 1029
AloI GAACNNNNNNTCC 4 cut(s) 1761, 1793, 1854, 1886
Alw21I GWGCWC 4 cut(s) 744, 1705, 1909, 2172
Alw26I GTCTC 5 cut(s) 448, 1782, 2235, 2359, 2494
Alw44I GTGCAC 1 cut(s) 1905
AlwI GGATC 4 cut(s) 335, 408, 750, 2216
Ama87I CYCGRG 2 cut(s) 215, 290
AoxI GGCC 2 cut(s) 967, 972
ApaLI GTGCAC 1 cut(s) 1905
ApeKI GCWGC 6 cut(s) 698, 1324, 1498, 1547, 1562, 1565
ApoI RAATTY 6 cut(s) 140, 722, 786, 834, 1273, 1937
ArsI GACNNNNNNTTYG 2 cut(s) 1083, 1115
AseI ATTAAT 1 cut(s) 1671
Asp700I GAANNNNTTC 1 cut(s) 2068
AspLEI GCGC 1 cut(s) 1224
AspS9I GGNCC 3 cut(s) 286, 845, 871
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 8 cut(s) 545, 554, 901, 1483, 1686, 1688, 2100, 2347
AvaI CYCGRG 2 cut(s) 215, 290
AvaII GGWCC 3 cut(s) 286, 845, 871
AxyI CCTNAGG 1 cut(s) 474
BaeGI GKGCMC 1 cut(s) 1909
BanI GGYRCC 1 cut(s) 1742
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 4 cut(s) 744, 1705, 1909, 2172
BbvI GCAGC 6 cut(s) 710, 1336, 1510, 1534, 1549, 1577
BccI CCATC 7 cut(s) 214, 542, 1090, 2023, 2204, 2459, 2468
BceAI ACGGC 1 cut(s) 1316
BciT130I CCWGG 7 cut(s) 572, 971, 1698, 2061, 2116, 2315, 2432
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 5 cut(s) 448, 1782, 2235, 2359, 2494
BfaI CTAG 6 cut(s) 56, 429, 1110, 1785, 1890, 2459
BfmI CTRYAG 2 cut(s) 1563, 1920
BfuAI ACCTGC 1 cut(s) 2323
BglII AGATCT 2 cut(s) 682, 1988
BisI GCNGC 8 cut(s) 699, 1325, 1499, 1548, 1563, 1566, 2273, 2358
BlsI GCNGC 8 cut(s) 700, 1326, 1500, 1549, 1564, 1567, 2274, 2359
BmcAI AGTACT 1 cut(s) 1390
Bme1390I CCNGG 8 cut(s) 29, 572, 971, 1698, 2061, 2116, 2315, 2432
Bme18I GGWCC 3 cut(s) 286, 845, 871
BmeT110I CYCGRG 2 cut(s) 215, 290
BmgBI CACGTC 1 cut(s) 1589
BmgT120I GGNCC 3 cut(s) 286, 845, 871
BmiI GGNNCC 5 cut(s) 85, 368, 873, 923, 1744
BmrFI CCNGG 8 cut(s) 29, 572, 971, 1698, 2061, 2116, 2315, 2432
BoxI GACNNNNGTC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 360
BplI GAGNNNNNCTC 4 cut(s) 2168, 2200, 2231, 2263
BpmI CTGGAG 3 cut(s) 1090, 1881, 2324
Bpu10I CCTNAGC 1 cut(s) 2166
BpuEI CTTGAG 4 cut(s) 671, 961, 2233, 2478
BpuMI CCSGG 1 cut(s) 29
Bsa29I ATCGAT 3 cut(s) 194, 754, 1630
BsaHI GRCGYC 3 cut(s) 252, 2400, 2506
BsaI GGTCTC 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 1340
BsaXI ACNNNNNCTCC 4 cut(s) 1854, 1884, 2491, 2521
Bsc4I CCNNNNNNNGG 7 cut(s) 220, 261, 295, 1697, 2066, 2409, 2525
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 6 cut(s) 370, 544, 1073, 1396, 1864, 2307
Bse21I CCTNAGG 1 cut(s) 474
BseBI CCWGG 7 cut(s) 572, 971, 1698, 2061, 2116, 2315, 2432
BseCI ATCGAT 3 cut(s) 194, 754, 1630
BseLI CCNNNNNNNGG 7 cut(s) 220, 261, 295, 1697, 2066, 2409, 2525
BseMII CTCAG 8 cut(s) 191, 488, 597, 1260, 1334, 2034, 2157, 2250
BseNI ACTGG 6 cut(s) 370, 544, 1073, 1396, 1864, 2307
BseRI GAGGAG 4 cut(s) 76, 494, 686, 1733
BseSI GKGCMC 1 cut(s) 1909
BseXI GCAGC 6 cut(s) 710, 1336, 1510, 1534, 1549, 1577
BseYI CCCAGC 1 cut(s) 2408
BsgI GTGCAG 1 cut(s) 1671
Bsh1236I CGCG 2 cut(s) 91, 305
BshFI GGCC 2 cut(s) 969, 974
BshNI GGYRCC 1 cut(s) 1742
BshVI ATCGAT 3 cut(s) 194, 754, 1630
BsiHKAI GWGCWC 4 cut(s) 744, 1705, 1909, 2172
BsiHKCI CYCGRG 2 cut(s) 215, 290
BsiSI CCGG 3 cut(s) 29, 966, 1341
BslFI GGGAC 2 cut(s) 1599, 1930
BslI CCNNNNNNNGG 7 cut(s) 220, 261, 295, 1697, 2066, 2409, 2525
BsmAI GTCTC 5 cut(s) 448, 1782, 2235, 2359, 2494
BsmBI CGTCTC 1 cut(s) 2494
BsmFI GGGAC 2 cut(s) 1599, 1930
BsmI GAATGC 3 cut(s) 1066, 1483, 1549
BsnI GGCC 2 cut(s) 969, 974
Bso31I GGTCTC 1 cut(s) 448
BsoBI CYCGRG 2 cut(s) 215, 290
Bsp1286I GDGCHC 5 cut(s) 40, 744, 1705, 1909, 2172
Bsp143I GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
Bsp68I TCGCGA 1 cut(s) 91
BspANI GGCC 2 cut(s) 969, 974
BspCNI CTCAG 8 cut(s) 190, 487, 596, 1261, 1333, 2033, 2158, 2249
BspDI ATCGAT 3 cut(s) 194, 754, 1630
BspFNI CGCG 2 cut(s) 91, 305
BspLI GGNNCC 5 cut(s) 85, 368, 873, 923, 1744
BspMAI CTGCAG 2 cut(s) 1567, 1924
BspMI ACCTGC 1 cut(s) 2323
BspPI GGATC 4 cut(s) 335, 408, 750, 2216
BspQI GCTCTTC 1 cut(s) 2420
BspT107I GGYRCC 1 cut(s) 1742
BspTNI GGTCTC 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 965
BsrI ACTGG 6 cut(s) 370, 544, 1073, 1396, 1864, 2307
BssAI RCCGGY 1 cut(s) 965
BssMI GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
BssNI GRCGYC 3 cut(s) 252, 2400, 2506
BssT1I CCWWGG 5 cut(s) 231, 414, 438, 763, 2394
Bst2UI CCWGG 7 cut(s) 572, 971, 1698, 2061, 2116, 2315, 2432
Bst4CI ACNGT 2 cut(s) 1870, 2104
Bst6I CTCTTC 1 cut(s) 2420
BstACI GRCGYC 3 cut(s) 252, 2400, 2506
BstAPI GCANNNNNTGC 1 cut(s) 1537
BstC8I GCNNGC 7 cut(s) 211, 434, 470, 696, 1241, 1329, 2330
BstEII GGTNACC 1 cut(s) 551
BstENI CCTNNNNNAGG 1 cut(s) 1695
BstFNI CGCG 2 cut(s) 91, 305
BstHHI GCGC 1 cut(s) 1224
BstKTI GATC 9 cut(s) 330, 403, 685, 758, 907, 1630, 1634, 1991, 2224
BstMAI GTCTC 5 cut(s) 448, 1782, 2235, 2359, 2494
BstMBI GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
BstNI CCWGG 7 cut(s) 572, 971, 1698, 2061, 2116, 2315, 2432
BstNSI RCATGY 3 cut(s) 527, 1243, 2162
BstPAI GACNNNNGTC 1 cut(s) 549
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 8 cut(s) 27, 570, 969, 1696, 2059, 2114, 2313, 2430
BstSFI CTRYAG 2 cut(s) 1563, 1920
BstSLI GKGCMC 1 cut(s) 1909
BstUI CGCG 2 cut(s) 91, 305
BstV1I GCAGC 6 cut(s) 710, 1336, 1510, 1534, 1549, 1577
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 682, 1988
BstXI CCANNNNNNTGG 5 cut(s) 238, 1096, 1292, 2302, 2321
BstYI RGATCY 2 cut(s) 682, 1988
Bsu15I ATCGAT 3 cut(s) 194, 754, 1630
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 2 cut(s) 969, 974
BsuTUI ATCGAT 3 cut(s) 194, 754, 1630
BtrI CACGTC 1 cut(s) 1589
BtsIMutI CAGTG 4 cut(s) 537, 1266, 1630, 1909
BtuMI TCGCGA 1 cut(s) 91
BveI ACCTGC 1 cut(s) 2323
Cac8I GCNNGC 7 cut(s) 211, 434, 470, 696, 1241, 1329, 2330
CfoI GCGC 1 cut(s) 1224
Cfr10I RCCGGY 1 cut(s) 965
Cfr13I GGNCC 3 cut(s) 286, 845, 871
ClaI ATCGAT 3 cut(s) 194, 754, 1630
CseI GACGC 5 cut(s) 260, 294, 311, 1510, 2408
CsiI ACCWGGT 1 cut(s) 1696
Csp6I GTAC 3 cut(s) 1374, 1389, 2162
CviQI GTAC 3 cut(s) 1374, 1389, 2162
DpnI GATC 9 cut(s) 329, 402, 684, 757, 906, 1629, 1633, 1990, 2223
DpnII GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
DraIII CACNNNGTG 1 cut(s) 1700
EaeI YGGCCR 1 cut(s) 967
Eam1104I CTCTTC 1 cut(s) 2420
EarI CTCTTC 1 cut(s) 2420
EciI GGCGGA 5 cut(s) 9, 1067, 1695, 2134, 2259
Eco130I CCWWGG 5 cut(s) 231, 414, 438, 763, 2394
Eco147I AGGCCT 1 cut(s) 974
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 448
Eco47I GGWCC 3 cut(s) 286, 845, 871
Eco57I CTGAAG 4 cut(s) 822, 1598, 1626, 1977
Eco81I CCTNAGG 1 cut(s) 474
Eco88I CYCGRG 2 cut(s) 215, 290
Eco91I GGTNACC 1 cut(s) 551
EcoNI CCTNNNNNAGG 1 cut(s) 1695
EcoO109I RGGNCCY 2 cut(s) 286, 871
EcoO65I GGTNACC 1 cut(s) 551
EcoRI GAATTC 3 cut(s) 140, 834, 1273
EcoRII CCWGG 7 cut(s) 570, 969, 1696, 2059, 2114, 2313, 2430
EcoT14I CCWWGG 5 cut(s) 231, 414, 438, 763, 2394
EcoT22I ATGCAT 3 cut(s) 897, 1241, 1245
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 5 cut(s) 231, 414, 438, 763, 2394
Esp3I CGTCTC 1 cut(s) 2494
FalI AAGNNNNNCTT 5 cut(s) 431, 463, 2249, 2281, 2527
FaqI GGGAC 2 cut(s) 1599, 1930
FauI CCCGC 2 cut(s) 374, 1350
Fnu4HI GCNGC 8 cut(s) 699, 1325, 1499, 1548, 1563, 1566, 2273, 2358
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 8 cut(s) 699, 1325, 1499, 1548, 1563, 1566, 2273, 2358
FspBI CTAG 6 cut(s) 56, 429, 1110, 1785, 1890, 2459
GlaI GCGC 1 cut(s) 1223
GluI GCNGC 8 cut(s) 699, 1325, 1499, 1548, 1563, 1566, 2273, 2358
GsaI CCCAGC 1 cut(s) 2412
GsuI CTGGAG 3 cut(s) 1090, 1881, 2324
HaeIII GGCC 2 cut(s) 969, 974
HapII CCGG 3 cut(s) 29, 966, 1341
HgaI GACGC 5 cut(s) 260, 294, 311, 1510, 2408
HhaI GCGC 1 cut(s) 1224
Hin1I GRCGYC 3 cut(s) 252, 2400, 2506
Hin6I GCGC 1 cut(s) 1222
HinP1I GCGC 1 cut(s) 1222
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 3 cut(s) 662, 827, 2251
HinfI GANTC 9 cut(s) 16, 93, 191, 1074, 1181, 1652, 1844, 2153, 2318
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 3 cut(s) 29, 966, 1341
HphI GGTGA 8 cut(s) 545, 554, 901, 1483, 1686, 1688, 2100, 2347
Hpy166II GTNNAC 6 cut(s) 277, 301, 313, 499, 1216, 1907
Hpy8I GTNNAC 6 cut(s) 277, 301, 313, 499, 1216, 1907
Hpy99I CGWCG 6 cut(s) 140, 208, 284, 310, 362, 2508
HpyCH4III ACNGT 2 cut(s) 1870, 2104
HpyCH4IV ACGT 3 cut(s) 928, 1588, 2506
HpySE526I ACGT 3 cut(s) 928, 1588, 2506
Hsp92I GRCGYC 3 cut(s) 252, 2400, 2506
HspAI GCGC 1 cut(s) 1222
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
LguI GCTCTTC 1 cut(s) 2420
Lsp1109I GCAGC 6 cut(s) 710, 1336, 1510, 1534, 1549, 1577
MabI ACCWGGT 1 cut(s) 1696
MaeI CTAG 6 cut(s) 56, 429, 1110, 1785, 1890, 2459
MaeII ACGT 3 cut(s) 928, 1588, 2506
MaeIII GTNAC 6 cut(s) 542, 551, 1131, 1798, 1855, 2098
MalI GATC 9 cut(s) 329, 402, 684, 757, 906, 1629, 1633, 1990, 2223
MboI GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 2 cut(s) 682, 1988
MhlI GDGCHC 5 cut(s) 40, 744, 1705, 1909, 2172
MluI ACGCGT 1 cut(s) 303
MlyI GAGTC 2 cut(s) 10, 102
MmeI TCCRAC 3 cut(s) 949, 1747, 1956
Mph1103I ATGCAT 3 cut(s) 897, 1241, 1245
MroXI GAANNNNTTC 1 cut(s) 2068
MseI TTAA 9 cut(s) 321, 486, 498, 717, 1148, 1314, 1460, 1671, 2551
MslI CAYNNNNRTG 5 cut(s) 1029, 1140, 1248, 1290, 1737
MspI CCGG 3 cut(s) 29, 966, 1341
MspR9I CCNGG 8 cut(s) 29, 572, 971, 1698, 2061, 2116, 2315, 2432
MunI CAATTG 1 cut(s) 41
Mva1269I GAATGC 3 cut(s) 1066, 1483, 1549
MvaI CCWGG 7 cut(s) 572, 971, 1698, 2061, 2116, 2315, 2432
MvnI CGCG 2 cut(s) 91, 305
NciI CCSGG 1 cut(s) 29
NdeII GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
NlaIV GGNNCC 5 cut(s) 85, 368, 873, 923, 1744
NmuCI GTSAC 2 cut(s) 542, 551
NruI TCGCGA 1 cut(s) 91
NsiI ATGCAT 3 cut(s) 897, 1241, 1245
NspI RCATGY 3 cut(s) 527, 1243, 2162
OliI CACNNNNGTG 1 cut(s) 1029
PaeI GCATGC 1 cut(s) 1243
PaeR7I CTCGAG 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 2323
PceI AGGCCT 1 cut(s) 974
PciI ACATGT 1 cut(s) 2158
PciSI GCTCTTC 1 cut(s) 2420
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 288
PctI GAATGC 3 cut(s) 1066, 1483, 1549
PdmI GAANNNNTTC 1 cut(s) 2068
PfeI GAWTC 7 cut(s) 191, 1074, 1181, 1652, 1844, 2153, 2318
PflFI GACNNNGTC 3 cut(s) 284, 409, 2505
PkrI GCNGC 8 cut(s) 700, 1326, 1500, 1549, 1564, 1567, 2274, 2359
PleI GAGTC 2 cut(s) 10, 101
PpsI GAGTC 2 cut(s) 10, 101
PpuMI RGGWCCY 2 cut(s) 286, 871
PscI ACATGT 1 cut(s) 2158
PshAI GACNNNNGTC 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 1671
PsiI TTATAA 1 cut(s) 2138
Psp5II RGGWCCY 2 cut(s) 286, 871
Psp6I CCWGG 7 cut(s) 570, 969, 1696, 2059, 2114, 2313, 2430
PspEI GGTNACC 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 2408
PspGI CCWGG 7 cut(s) 570, 969, 1696, 2059, 2114, 2313, 2430
PspN4I GGNNCC 5 cut(s) 85, 368, 873, 923, 1744
PspPI GGNCC 3 cut(s) 286, 845, 871
PspPPI RGGWCCY 2 cut(s) 286, 871
PstI CTGCAG 2 cut(s) 1567, 1924
PsuI RGATCY 2 cut(s) 682, 1988
PsyI GACNNNGTC 3 cut(s) 284, 409, 2505
RruI TCGCGA 1 cut(s) 91
RsaI GTAC 3 cut(s) 1375, 1390, 2163
RsaNI GTAC 3 cut(s) 1374, 1389, 2162
RseI CAYNNNNRTG 5 cut(s) 1029, 1140, 1248, 1290, 1737
SapI GCTCTTC 1 cut(s) 2420
SaqAI TTAA 9 cut(s) 321, 486, 498, 717, 1148, 1314, 1460, 1671, 2551
SatI GCNGC 8 cut(s) 699, 1325, 1499, 1548, 1563, 1566, 2273, 2358
Sau3AI GATC 9 cut(s) 327, 400, 682, 755, 904, 1627, 1631, 1988, 2221
Sau96I GGNCC 3 cut(s) 286, 845, 871
ScaI AGTACT 1 cut(s) 1390
SchI GAGTC 2 cut(s) 10, 102
ScrFI CCNGG 8 cut(s) 29, 572, 971, 1698, 2061, 2116, 2315, 2432
SduI GDGCHC 5 cut(s) 40, 744, 1705, 1909, 2172
SexAI ACCWGGT 1 cut(s) 1696
SfcI CTRYAG 2 cut(s) 1563, 1920
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 3 cut(s) 286, 845, 871
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 5 cut(s) 1029, 1140, 1248, 1290, 1737
SmlI CTYRAG 5 cut(s) 290, 686, 976, 2248, 2493
SmoI CTYRAG 5 cut(s) 290, 686, 976, 2248, 2493
SphI GCATGC 1 cut(s) 1243
SseBI AGGCCT 1 cut(s) 974
SspMI CTAG 6 cut(s) 56, 429, 1110, 1785, 1890, 2459
StuI AGGCCT 1 cut(s) 974
StyD4I CCNGG 8 cut(s) 27, 570, 969, 1696, 2059, 2114, 2313, 2430
StyI CCWWGG 5 cut(s) 231, 414, 438, 763, 2394
TaaI ACNGT 2 cut(s) 1870, 2104
TaiI ACGT 3 cut(s) 931, 1591, 2509
TaqII GACCGA 1 cut(s) 833
TatI WGTACW 1 cut(s) 1388
TauI GCSGC 2 cut(s) 2275, 2360
TfiI GAWTC 7 cut(s) 191, 1074, 1181, 1652, 1844, 2153, 2318
Tru1I TTAA 9 cut(s) 321, 486, 498, 717, 1148, 1314, 1460, 1671, 2551
Tru9I TTAA 9 cut(s) 321, 486, 498, 717, 1148, 1314, 1460, 1671, 2551
TscAI CASTG 4 cut(s) 544, 1273, 1630, 1909
TseFI GTSAC 2 cut(s) 542, 551
TseI GCWGC 6 cut(s) 698, 1324, 1498, 1547, 1562, 1565
Tsp45I GTSAC 2 cut(s) 542, 551
TspGWI ACGGA 1 cut(s) 2537
TspRI CASTG 4 cut(s) 544, 1273, 1630, 1909
Tth111I GACNNNGTC 3 cut(s) 284, 409, 2505
VneI GTGCAC 1 cut(s) 1905
VpaK11BI GGWCC 3 cut(s) 286, 845, 871
VspI ATTAAT 1 cut(s) 1671
XagI CCTNNNNNAGG 1 cut(s) 1695
XapI RAATTY 6 cut(s) 140, 722, 786, 834, 1273, 1937
XceI RCATGY 3 cut(s) 527, 1243, 2162
XcmI CCANNNNNNNNNTGG 2 cut(s) 932, 2321
XhoI CTCGAG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 2068
XspI CTAG 6 cut(s) 56, 429, 1110, 1785, 1890, 2459
ZraI GACGTC 1 cut(s) 2507
ZrmI AGTACT 1 cut(s) 1390
Zsp2I ATGCAT 3 cut(s) 897, 1241, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.