Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003403

Physical Location & Seq

Genomic Coordinates Forward (+)

5590402 .. 5595199

Gene Structure 4798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTTCACTTCAGTTACATCTTCCATTCTCAACCAGTCCACGCCTACCCATTTCCCGGTTTAGACGCAGTTCGGTCCGGTCCTTCACTGAACGCCAGACATTCTTCAACCGCATTGCCCCTGTCTACGATAACTTTTGGTTAAATGATCTATTGAGCTTGGGTCAGCATCGAATATGGAAAAGAATGGCATTTTTGTTGAGTGGAGCAAAAATCGGAGAGAGTGTGTTGGATTTGTGCTGTGGAATTGGGGATTTAGCGTTTCTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008171 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0052624 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

10.26

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	33 - 88	5.2e-13	ubiE/COQ5 methyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23360 AT1G23360 AT1G23360
fragaria_vesca	FvH4_4g26051 FvH4_4g26060 FvH4_4g26080
malus_domestica	MD13G1095900.v1.1 MD13G1096300.v1.1 MD16G1097300.v1.1
prunus_persica	Prupe.1G249500_v2.0.a1
pyrus_communis	pycom13g08360 pycom13g08390 pycom16g08290
rosa_chinensis	RchiOBHm_Chr2g0132031 RchiOBHm_Chr4g0433541 RchiOBHm_Chr6g0273261
rosa_laevigata	RLG00000002005 RLG00000006744 RLG00000033410
rosa_multiflora	Rmu_sc0000312.1_g000010 Rmu_sc0009599.1_g000015
rosa_roxburghii	Rroxscaffold_3G00246010 Rroxscaffold_4G00300010
rosa_rugosa	Rorug04G0269700
rosa_samantha	Rh2BG361000 Rh4AG164200 Rh4AG324400 Rh4BG332300 Rh4CG347600 Rh4DG328600 Rh5AG111900 Rh5AG129600 Rh6AG348700
rosa_wichuraiana	Rw0G020180 Rw4G028090 Rw6G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	76, 81
AsuC2I	CCSGG	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	76, 81
BcnI	CCSGG	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	76, 81
BmgT120I	GGNCC	2 cut(s)	76, 81
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	58, 79
BslI	CCNNNNNNNGG	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	76, 81
CpoI	CGGWCCG	1 cut(s)	76
CseI	GACGC	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	76
CviJI	RGCY	2 cut(s)	5, 159
CviKI_1	RGCY	2 cut(s)	5, 159
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	76, 81
FaiI	YATR	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	126
HapII	CCGG	2 cut(s)	58, 79
HgaI	GACGC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	58, 79
Hpy166II	GTNNAC	2 cut(s)	41, 127
Hpy188I	TCNGA	2 cut(s)	218, 272
Hpy8I	GTNNAC	2 cut(s)	41, 127
HpyAV	CCTTC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	5 cut(s)	49, 71, 92, 110, 135
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	14, 97
MluCI	AATT	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	1 cut(s)	143
MspI	CCGG	2 cut(s)	58, 79
MspR9I	CCNGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	76, 81
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	2 cut(s)	76, 81
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	178
SgeI	CNNG	8 cut(s)	48, 54, 69, 70, 91, 109, 134, 172
SinI	GGWCC	2 cut(s)	76, 81
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	56
TaqI	TCGA	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	76, 81
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.