pycom13g13880

phosphatase 2c

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
9872152 .. 9874798
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1305 bp
ATGACATGGCGGCCAAGAGGAAGTGTTTGTTTGATTGTTTCGTCGTGGACCATCGCCTTTTGCAAGTGTTTGTTTGATTGTTTCGTTGTGGACCATCGCCGGACGGAAATCATATTCCAGCAACTCATACCGTACAAATTGTTGGCTATGGTGTTATTTCCATCTCTTCTTGAGGGGTTGGGAAGAACGAAATCGGGCAAGAAAACGAAGAATTGCCCTAGCGATGTTGCGAGGAAAACTGCAAAAGCATTGGAAAAGGAAGCCAAAAAGAATGAACGCGTTTCGAGTTCTTCCGGCATGGTTATGTCTGAGAGGTCCAACACTCTCTCCTCCGTTTGCTCCAAGAGAGGCCGGAAGGGGATCAATCAGGATTGCTTAACCATTTGGAAGGTAGGTCCAAAGTCACGTGACATTATTTTCGCAGATGCGGTCATAGCTGCATCAGCTAGAGCGGATGTGCTCCCCATATGCACTCGAGCTGGAGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTTGATGGCCATGGCCAATGGGGTCATCTTGTTAGCAAAAGGGTCAGGGAATCCTTGCCTGCTTCCTTGTTGTGCAATTGGCAAGAGACTCTCACTTCAACATCACTTGACCTGGATTTTGAAATGGAGATGGACAGAAACCTCCATGGTTTCGATATGTGGAAGCAATCCTTTCTGAAAACCTACGCTTCCATTGACAAGGAGCTCAAGCATTCTTCCAAACTCGATTCCTACTGGAGTGGCGCTACGGCTCTGACAATTATTAAGCAGGGTGAAAATCTCGTCGTTGCAAACATCGGTGATTCTCGGGCTGTTTTAGCCTCCGTTTCTGAAGATGGCAGTTTGGCAGCCCTCCAGCTTACAGTGGACTTTAAACCCAATTTACCTCGGACTTACAGGGTGTGGATGCCAAATGGTAAAACACCAGGACTGGCAATATCAAGAGCATTTGGTGACTACTGTGTGAAGGACTTCGGGCTCATCTCAATGCCTGACGTGACTCAAAGACGCATAACCAGCAGCGACCAGTTTGTCATTCTAGCAACAGATGGGGTATGGGATGTCATCTCCAACCAAGAAGCTGTTAAAATAGTTTCCTCATGTCCAGATAGGAAAAAAACAGCTAAAAGACTGGTGGGATGTGCCGCTCTTGCATGGAAGACTAAGAAACGAGGCATTGCGATGGACGACATCTCAGCTATTTGCCTGTTCTTTCACGCTTCATCCCCACCACAAGCCAACCATTTGGTCTCAAAATACTCTGGAGTGAAGGAATCTGGGTAA

Protein Analysis

435

Amino Acids

47.99

Weight (kDa)

9.16

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 215 - 384 1.3e-32 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1052
AccBSI CCGCTC 2 cut(s) 452, 1169
AccII CGCG 1 cut(s) 279
AciI CCGC 4 cut(s) 10, 428, 452, 1167
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 3 cut(s) 11, 529, 535
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 873
AcvI CACGTG 1 cut(s) 407
AfaI GTAC 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 2 cut(s) 621, 644
AjiI CACGTC 1 cut(s) 1018
AjnI CCWGG 2 cut(s) 633, 946
AluBI AGCT 8 cut(s) 437, 446, 479, 727, 880, 1103, 1145, 1220
AluI AGCT 8 cut(s) 437, 446, 479, 727, 880, 1103, 1145, 1220
Alw21I GWGCWC 2 cut(s) 462, 729
Alw26I GTCTC 2 cut(s) 602, 1276
AlwI GGATC 1 cut(s) 368
Ama87I CYCGRG 2 cut(s) 474, 828
AoxI GGCC 4 cut(s) 11, 349, 529, 535
ApeKI GCWGC 3 cut(s) 437, 869, 1041
ApoI RAATTY 1 cut(s) 485
ArsI GACNNNNNNTTYG 4 cut(s) 401, 433, 623, 655
Asp700I GAANNNNTTC 1 cut(s) 992
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 48, 91, 315, 395
AsuHPI GGTGA 3 cut(s) 806, 833, 986
AvaI CYCGRG 2 cut(s) 474, 828
AvaII GGWCC 4 cut(s) 48, 91, 315, 395
BalI TGGCCA 2 cut(s) 531, 537
BanII GRGCYC 2 cut(s) 729, 1002
BbrPI CACGTG 1 cut(s) 407
BbsI GAAGAC 2 cut(s) 507, 1187
Bbv12I GWGCWC 2 cut(s) 462, 729
BbvI GCAGC 3 cut(s) 424, 881, 1053
BccI CCATC 8 cut(s) 59, 102, 169, 521, 646, 851, 1064, 1198
BceAI ACGGC 1 cut(s) 786
BciT130I CCWGG 2 cut(s) 635, 948
BcoDI GTCTC 2 cut(s) 602, 1276
BfaI CTAG 3 cut(s) 219, 447, 1061
BfoI RGCGCY 1 cut(s) 768
BisI GCNGC 5 cut(s) 11, 438, 870, 1042, 1167
BlsI GCNGC 5 cut(s) 12, 439, 871, 1043, 1168
Bme1390I CCNGG 2 cut(s) 635, 948
Bme18I GGWCC 4 cut(s) 48, 91, 315, 395
BmeT110I CYCGRG 2 cut(s) 474, 828
BmgBI CACGTC 1 cut(s) 1018
BmgT120I GGNCC 4 cut(s) 48, 91, 315, 395
BmrFI CCNGG 2 cut(s) 635, 948
BmsI GCATC 4 cut(s) 415, 449, 482, 918
BpiI GAAGAC 2 cut(s) 507, 1187
BpmI CTGGAG 4 cut(s) 501, 778, 860, 1305
BpuEI CTTGAG 2 cut(s) 191, 713
BsaAI YACGTR 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 1276
BsaJI CCNNGG 3 cut(s) 532, 667, 908
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse1I ACTGG 4 cut(s) 761, 957, 1048, 1158
Bse3DI GCAATG 1 cut(s) 1197
BseBI CCWGG 2 cut(s) 635, 948
BseDI CCNNGG 3 cut(s) 532, 667, 908
BseGI GGATG 6 cut(s) 460, 497, 933, 1087, 1166, 1244
BseMI GCAATG 1 cut(s) 1197
BseMII CTCAG 2 cut(s) 300, 1230
BseNI ACTGG 4 cut(s) 761, 957, 1048, 1158
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 3 cut(s) 424, 881, 1053
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 4 cut(s) 13, 351, 531, 537
BsiHKAI GWGCWC 2 cut(s) 462, 729
BsiHKCI CYCGRG 2 cut(s) 474, 828
BsiSI CCGG 3 cut(s) 100, 294, 352
BsmAI GTCTC 2 cut(s) 602, 1276
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 4 cut(s) 13, 351, 531, 537
Bso31I GGTCTC 1 cut(s) 1276
BsoBI CYCGRG 2 cut(s) 474, 828
Bsp1286I GDGCHC 3 cut(s) 462, 729, 1002
Bsp143I GATC 1 cut(s) 360
Bsp19I CCATGG 2 cut(s) 532, 667
BspACI CCGC 4 cut(s) 10, 428, 452, 1167
BspANI GGCC 4 cut(s) 13, 351, 531, 537
BspCNI CTCAG 2 cut(s) 301, 1229
BspFNI CGCG 1 cut(s) 279
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 1276
BsrBI CCGCTC 2 cut(s) 452, 1169
BsrDI GCAATG 1 cut(s) 1197
BsrI ACTGG 4 cut(s) 761, 957, 1048, 1158
BssECI CCNNGG 3 cut(s) 532, 667, 908
BssMI GATC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 532, 667
Bst2UI CCWGG 2 cut(s) 635, 948
Bst4CI ACNGT 3 cut(s) 132, 886, 983
Bst6I CTCTTC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 3 cut(s) 309, 1185, 1216
BstDSI CCRYGG 2 cut(s) 532, 667
BstF5I GGATG 6 cut(s) 460, 497, 933, 1087, 1166, 1244
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 768
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 2 cut(s) 602, 1276
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 5 cut(s) 434, 443, 839, 1038, 1172
BstNI CCWGG 2 cut(s) 635, 948
BstSCI CCNGG 2 cut(s) 633, 946
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 3 cut(s) 424, 881, 1053
BstV2I GAAGAC 2 cut(s) 507, 1187
BstXI CCANNNNNNTGG 1 cut(s) 1267
BsuRI GGCC 4 cut(s) 13, 351, 531, 537
BtgI CCRYGG 2 cut(s) 532, 667
BtgZI GCGATG 4 cut(s) 37, 80, 237, 1217
BtrI CACGTC 1 cut(s) 1018
BtsCI GGATG 6 cut(s) 460, 497, 933, 1087, 1166, 1244
BtsIMutI CAGTG 1 cut(s) 891
Cac8I GCNNGC 1 cut(s) 582
CfoI GCGC 1 cut(s) 767
Cfr13I GGNCC 4 cut(s) 48, 91, 315, 395
CseI GACGC 1 cut(s) 1038
Csp6I GTAC 1 cut(s) 133
CviAII CATG 7 cut(s) 6, 298, 505, 533, 668, 1122, 1176
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 309, 1185, 1216
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
DraI TTTAAA 1 cut(s) 895
DrdI GACNNNNNNGTC 1 cut(s) 1052
DseDI GACNNNNNNGTC 1 cut(s) 1052
EaeI YGGCCR 3 cut(s) 11, 529, 535
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 2 cut(s) 532, 667
Eco24I GRGCYC 2 cut(s) 729, 1002
Eco31I GGTCTC 1 cut(s) 1276
Eco47I GGWCC 4 cut(s) 48, 91, 315, 395
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 873
Eco72I CACGTG 1 cut(s) 407
Eco88I CYCGRG 2 cut(s) 474, 828
EcoICRI GAGCTC 1 cut(s) 727
EcoRII CCWGG 2 cut(s) 633, 946
EcoT14I CCWWGG 2 cut(s) 532, 667
EcoT38I GRGCYC 2 cut(s) 729, 1002
ErhI CCWWGG 2 cut(s) 532, 667
FaeI CATG 7 cut(s) 9, 301, 508, 536, 671, 1125, 1179
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 7 cut(s) 5, 297, 504, 532, 667, 1121, 1175
FauNDI CATATG 1 cut(s) 467
Fnu4HI GCNGC 5 cut(s) 11, 438, 870, 1042, 1167
FokI GGATG 6 cut(s) 467, 504, 940, 1094, 1173, 1231
FriOI GRGCYC 2 cut(s) 729, 1002
Fsp4HI GCNGC 5 cut(s) 11, 438, 870, 1042, 1167
FspBI CTAG 3 cut(s) 219, 447, 1061
GlaI GCGC 1 cut(s) 766
GluI GCNGC 5 cut(s) 11, 438, 870, 1042, 1167
GsuI CTGGAG 4 cut(s) 501, 778, 860, 1305
HaeII RGCGCY 1 cut(s) 768
HaeIII GGCC 4 cut(s) 13, 351, 531, 537
HapII CCGG 3 cut(s) 100, 294, 352
HgaI GACGC 1 cut(s) 1038
HhaI GCGC 1 cut(s) 767
Hin1II CATG 7 cut(s) 9, 301, 508, 536, 671, 1125, 1179
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HinfI GANTC 6 cut(s) 572, 610, 749, 824, 1021, 1295
HpaII CCGG 3 cut(s) 100, 294, 352
HphI GGTGA 3 cut(s) 806, 833, 986
Hpy166II GTNNAC 3 cut(s) 48, 91, 889
Hpy188I TCNGA 5 cut(s) 310, 699, 777, 853, 912
Hpy188III TCNNGA 5 cut(s) 170, 368, 963, 1127, 1284
Hpy8I GTNNAC 3 cut(s) 48, 91, 889
Hpy99I CGWCG 2 cut(s) 46, 809
HpyAV CCTTC 4 cut(s) 349, 382, 982, 1285
HpyCH4III ACNGT 3 cut(s) 132, 886, 983
HpyCH4IV ACGT 2 cut(s) 406, 1017
HpyCH4V TGCA 7 cut(s) 63, 242, 440, 471, 597, 812, 1175
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 443, 839, 1038, 1172
HpyF3I CTNAG 3 cut(s) 309, 1185, 1216
HpySE526I ACGT 2 cut(s) 406, 1017
Hsp92II CATG 7 cut(s) 9, 301, 508, 536, 671, 1125, 1179
HspAI GCGC 1 cut(s) 765
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 3 cut(s) 344, 465, 724
Lsp1109I GCAGC 3 cut(s) 424, 881, 1053
LweI GCATC 4 cut(s) 415, 449, 482, 918
MaeI CTAG 3 cut(s) 219, 447, 1061
MaeII ACGT 2 cut(s) 406, 1017
MaeIII GTNAC 4 cut(s) 402, 407, 974, 1018
MalI GATC 1 cut(s) 362
MbiI CCGCTC 2 cut(s) 452, 1169
MboI GATC 1 cut(s) 360
MboII GAAGA 8 cut(s) 158, 195, 220, 282, 512, 729, 866, 1192
MfeI CAATTG 1 cut(s) 598
MhlI GDGCHC 3 cut(s) 462, 729, 1002
MlsI TGGCCA 2 cut(s) 531, 537
MluCI AATT 6 cut(s) 137, 211, 485, 598, 780, 901
MluI ACGCGT 1 cut(s) 277
MluNI TGGCCA 2 cut(s) 531, 537
MlyI GAGTC 2 cut(s) 604, 1015
MmeI TCCRAC 2 cut(s) 342, 1116
Mox20I TGGCCA 2 cut(s) 531, 537
MroXI GAANNNNTTC 1 cut(s) 992
MscI TGGCCA 2 cut(s) 531, 537
MseI TTAA 4 cut(s) 377, 786, 894, 1107
MslI CAYNNNNRTG 3 cut(s) 302, 1007, 1202
Msp20I TGGCCA 2 cut(s) 531, 537
MspI CCGG 3 cut(s) 100, 294, 352
MspR9I CCNGG 2 cut(s) 635, 948
MunI CAATTG 1 cut(s) 598
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 2 cut(s) 635, 948
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 5 cut(s) 434, 443, 839, 1038, 1172
NcoI CCATGG 2 cut(s) 532, 667
NdeI CATATG 1 cut(s) 467
NdeII GATC 1 cut(s) 360
NlaIII CATG 7 cut(s) 9, 301, 508, 536, 671, 1125, 1179
NmuCI GTSAC 4 cut(s) 402, 407, 974, 1018
PaeR7I CTCGAG 1 cut(s) 474
PctI GAATGC 1 cut(s) 733
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 4 cut(s) 572, 749, 824, 1295
PkrI GCNGC 5 cut(s) 12, 439, 871, 1043, 1168
PleI GAGTC 2 cut(s) 604, 1015
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
PpsI GAGTC 2 cut(s) 604, 1015
Ppu21I YACGTR 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 633, 946
PspCI CACGTG 1 cut(s) 407
PspGI CCWGG 2 cut(s) 633, 946
PspPI GGNCC 4 cut(s) 48, 91, 315, 395
PspXI VCTCGAGB 1 cut(s) 474
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 3 cut(s) 302, 1007, 1202
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 4 cut(s) 377, 786, 894, 1107
SatI GCNGC 5 cut(s) 11, 438, 870, 1042, 1167
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 4 cut(s) 48, 91, 315, 395
SchI GAGTC 2 cut(s) 604, 1015
ScrFI CCNGG 2 cut(s) 635, 948
SduI GDGCHC 3 cut(s) 462, 729, 1002
SfaNI GCATC 4 cut(s) 415, 449, 482, 918
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 4 cut(s) 48, 91, 315, 395
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 3 cut(s) 302, 1007, 1202
SmlI CTYRAG 3 cut(s) 170, 474, 728
SmoI CTYRAG 3 cut(s) 170, 474, 728
Sse9I AATT 6 cut(s) 137, 211, 485, 598, 780, 901
SsiI CCGC 4 cut(s) 10, 428, 452, 1167
SspMI CTAG 3 cut(s) 219, 447, 1061
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 2 cut(s) 633, 946
StyI CCWWGG 2 cut(s) 532, 667
TaaI ACNGT 3 cut(s) 132, 886, 983
TaiI ACGT 2 cut(s) 409, 1020
TaqI TCGA 4 cut(s) 284, 475, 675, 747
TasI AATT 6 cut(s) 137, 211, 485, 598, 780, 901
TauI GCSGC 2 cut(s) 13, 1169
TfiI GAWTC 4 cut(s) 572, 749, 824, 1295
Tru1I TTAA 4 cut(s) 377, 786, 894, 1107
Tru9I TTAA 4 cut(s) 377, 786, 894, 1107
TscAI CASTG 1 cut(s) 891
TseFI GTSAC 4 cut(s) 402, 407, 974, 1018
TseI GCWGC 3 cut(s) 437, 869, 1041
Tsp45I GTSAC 4 cut(s) 402, 407, 974, 1018
TspDTI ATGAA 2 cut(s) 288, 1233
TspGWI ACGGA 3 cut(s) 119, 322, 835
TspRI CASTG 1 cut(s) 891
VpaK11BI GGWCC 4 cut(s) 48, 91, 315, 395
XapI RAATTY 1 cut(s) 485
XhoI CTCGAG 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 992
XspI CTAG 3 cut(s) 219, 447, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.