Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002074

Physical Location & Seq

Genomic Coordinates Forward (+)

13669234 .. 13671016

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATTGCCATCAAGCCTTCAGAACAACTCCACAACATCAACGACCCCAAACCCTCCACGTGTCAAACATCATACCATCAGAAACTTGATCTGACATACCTACACATACAAACACAGACACAAGCGTCCCACGCAGTTATATTATTGTGTGGGGGGTCTCCCTCTCTCCTAGCTCAAAACCAACACAACAACGCAACAAGACGGAAGAAAGAAGAAGCAGCAGCGAAAGCCGCTCTACACATCACCACCAATATAAACGCAAGCTTAGAGATCCTCACAGGCTTTTTATTAAAGCACTTTCTTCAAAATCTATATTTTCTTGTTAGCCGGAAGATGACGAGCATGCTTGGAGTTGAGCGTGATCTGAACCTCCGAGAGACTGAGCTGTGCCTAGGGCTTCCCGGTGGCGGTACTACTACTGTGGCCGAGCCGGAGACTGCCAAGACTACTGGAAAGAGAGGGTTCTCGGAGACAGTTGATCTCAAGCTCAACCTTCAGTCCAAGGAAGATCTGAATGACAATGTAAAAAATATTGCTTCCAAGGACAAAAACAACCTTCTTTCTTGCACAAAAGATCCATCAAAGCCTCCAGCCAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCATACCGAAAGAACATAATGTCGCAAAAGAACACCAGCGAGGAAAAAACTGAGAAGGCAAGCGGCGGCGGTGGCTGCAGCGCTGCGTTTGTGAAGGTTTGCATGGATGGCGCTCCATATCTCCGTAAGGTGGATTTGAAGATGTACAAGAGCTACCAAGAGCTCTCTAATGCCTTAACCAAGATGTTCAGTTCCTTCACCACCGGTAAGGGACCCAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009753 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010101 GO:0010102 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048518 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

284

Amino Acids

31.09

Weight (kDa)

9.37

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	126 - 279	1.4e-45	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04250 AT3G23050 AT3G23050 AT3G23050 AT4G14550 AT4G14550 AT4G14550 AT4G14550
fragaria_vesca	FvH4_2g22520 FvH4_4g02280 FvH4_4g02280 FvH4_4g02280
malus_domestica	MD05G1205800.v1.1 MD10G1192900.v1.1 MD13G1205000.v1.1 MD16G1206700.v1.1
prunus_persica	Prupe.1G027600_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1 Prupe.8G232200_v2.0.a1
pyrus_communis	pycom05g19190 pycom13g17780 pycom16g17370
rosa_chinensis	RchiOBHm_Chr4g0389621 RchiOBHm_Chr6g0289571
rosa_laevigata	RLG00000009966 RLG00000012292
rosa_multiflora	Rmu_co8206274.1_g000001 Rmu_sc0001527.1_g000060 Rmu_sc0007419.1_g000003 Rmu_sc0033355.1_g000001 Rmu_sc0033356.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335610 Rroxscaffold_7G00177850
rosa_rugosa	Rorug03G0324200 Rorug06G0204600
rosa_samantha	Rh4AG029000 Rh4BG022200 Rh4CG031000 Rh4DG022700 Rh6BG322600 Rh6CG329200
rosa_wichuraiana	Rw4G002160 Rw6G027270

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	233
AciI	CCGC	5 cut(s)	231, 408, 690, 693, 696
AclWI	GGATC	2 cut(s)	265, 569
AcoI	YGGCCR	2 cut(s)	423, 614
AcuI	CTGAAG	1 cut(s)	479
AcvI	CACGTG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	412, 773
AfeI	AGCGCT	1 cut(s)	709
AfiI	CCNNNNNNNGG	2 cut(s)	407, 757
AflIII	ACRYGT	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	830
AgsI	TTSAA	2 cut(s)	305, 766
AluBI	AGCT	6 cut(s)	173, 264, 385, 487, 780, 790
AluI	AGCT	6 cut(s)	173, 264, 385, 487, 780, 790
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	4 cut(s)	162, 371, 428, 464
AlwI	GGATC	2 cut(s)	265, 569
Aor51HI	AGCGCT	1 cut(s)	709
AoxI	GGCC	2 cut(s)	423, 614
ApeKI	GCWGC	5 cut(s)	218, 221, 702, 705, 710
AsiGI	ACCGGT	1 cut(s)	830
AspA2I	CCTAGG	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	710, 740
AspS9I	GGNCC	1 cut(s)	839
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	235, 817
AvaII	GGWCC	1 cut(s)	839
AvrII	CCTAGG	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	792
BbrPI	CACGTG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	5 cut(s)	230, 233, 689, 697, 717
BccI	CCATC	4 cut(s)	17, 84, 586, 728
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	4 cut(s)	162, 371, 428, 464
BfaI	CTAG	2 cut(s)	170, 392
BfmI	CTRYAG	1 cut(s)	703
BfoI	RGCGCY	2 cut(s)	711, 741
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	8 cut(s)	219, 222, 231, 691, 694, 703, 706, 711
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	8 cut(s)	220, 223, 232, 692, 695, 704, 707, 712
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	839
BmiI	GGNNCC	2 cut(s)	840, 841
BmrFI	CCNGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	5 cut(s)	391, 501, 540, 594, 843
BsaWI	WCCGGW	1 cut(s)	830
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 757
Bse118I	RCCGGY	1 cut(s)	830
Bse1I	ACTGG	2 cut(s)	454, 620
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	5 cut(s)	391, 501, 540, 594, 843
BseGI	GGATG	1 cut(s)	739
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	407, 757
BseMII	CTCAG	2 cut(s)	372, 669
BseNI	ACTGG	2 cut(s)	454, 620
BseXI	GCAGC	5 cut(s)	230, 233, 689, 697, 717
BshFI	GGCC	2 cut(s)	425, 616
BshTI	ACCGGT	1 cut(s)	830
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	4 cut(s)	328, 402, 431, 831
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	407, 757
BsmAI	GTCTC	4 cut(s)	162, 371, 428, 464
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	425, 616
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
BspACI	CCGC	5 cut(s)	231, 408, 690, 693, 696
BspANI	GGCC	2 cut(s)	425, 616
BspCNI	CTCAG	2 cut(s)	373, 670
BspLI	GGNNCC	2 cut(s)	840, 841
BspMAI	CTGCAG	1 cut(s)	707
BspPI	GGATC	2 cut(s)	265, 569
BspTNI	GGTCTC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	830
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	454, 620
BssAI	RCCGGY	1 cut(s)	830
BssECI	CCNNGG	5 cut(s)	391, 501, 540, 594, 843
BssMI	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
BssT1I	CCWWGG	5 cut(s)	391, 501, 540, 594, 843
Bst4CI	ACNGT	2 cut(s)	421, 475
BstAUI	TGTACA	1 cut(s)	771
BstBAI	YACGTR	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	262, 344, 688
BstDEI	CTNAG	3 cut(s)	265, 381, 678
BstF5I	GGATG	1 cut(s)	739
BstH2I	RGCGCY	2 cut(s)	711, 741
BstHHI	GCGC	2 cut(s)	710, 740
BstKTI	GATC	7 cut(s)	91, 273, 364, 481, 511, 577, 629
BstMAI	GTCTC	4 cut(s)	162, 371, 428, 464
BstMBI	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 227, 230, 699, 702, 735
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	703
BstV1I	GCAGC	5 cut(s)	230, 233, 689, 697, 717
BstX2I	RGATCY	3 cut(s)	270, 508, 574
BstYI	RGATCY	3 cut(s)	270, 508, 574
BsuRI	GGCC	2 cut(s)	425, 616
BtsCI	GGATG	1 cut(s)	739
Cac8I	GCNNGC	3 cut(s)	262, 344, 688
CfoI	GCGC	2 cut(s)	710, 740
Cfr10I	RCCGGY	1 cut(s)	830
Cfr13I	GGNCC	1 cut(s)	839
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	411, 772
CspAI	ACCGGT	1 cut(s)	830
CviAII	CATG	2 cut(s)	343, 730
CviQI	GTAC	2 cut(s)	411, 772
DdeI	CTNAG	3 cut(s)	265, 381, 678
DpnI	GATC	7 cut(s)	90, 272, 363, 480, 510, 576, 628
DpnII	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	2 cut(s)	423, 614
Ecl136II	GAGCTC	1 cut(s)	790
Eco130I	CCWWGG	5 cut(s)	391, 501, 540, 594, 843
Eco24I	GRGCYC	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	839
Eco47III	AGCGCT	1 cut(s)	709
Eco53kI	GAGCTC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	479
Eco72I	CACGTG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	839
EcoT14I	CCWWGG	5 cut(s)	391, 501, 540, 594, 843
EcoT38I	GRGCYC	1 cut(s)	792
ErhI	CCWWGG	5 cut(s)	391, 501, 540, 594, 843
FaeI	CATG	2 cut(s)	346, 733
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	342, 729
Fnu4HI	GCNGC	8 cut(s)	219, 222, 231, 691, 694, 703, 706, 711
FokI	GGATG	1 cut(s)	746
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	8 cut(s)	219, 222, 231, 691, 694, 703, 706, 711
FspBI	CTAG	2 cut(s)	170, 392
GlaI	GCGC	2 cut(s)	709, 739
GluI	GCNGC	8 cut(s)	219, 222, 231, 691, 694, 703, 706, 711
GsuI	CTGGAG	1 cut(s)	573
HaeII	RGCGCY	2 cut(s)	711, 741
HaeIII	GGCC	2 cut(s)	425, 616
HapII	CCGG	4 cut(s)	328, 402, 431, 831
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	2 cut(s)	710, 740
Hin1II	CATG	2 cut(s)	346, 733
Hin6I	GCGC	2 cut(s)	708, 738
HinP1I	GCGC	2 cut(s)	708, 738
HindIII	AAGCTT	1 cut(s)	262
HpaII	CCGG	4 cut(s)	328, 402, 431, 831
HphI	GGTGA	2 cut(s)	235, 817
Hpy188I	TCNGA	7 cut(s)	22, 81, 93, 366, 374, 469, 513
HpyAV	CCTTC	6 cut(s)	27, 503, 566, 676, 715, 832
HpyCH4III	ACNGT	2 cut(s)	421, 475
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	567, 705, 729
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 227, 230, 699, 702, 735
HpyF3I	CTNAG	3 cut(s)	265, 381, 678
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	346, 733
HspAI	GCGC	2 cut(s)	708, 738
KflI	GGGWCCC	1 cut(s)	839
Kzo9I	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
LmnI	GCTCC	1 cut(s)	745
LpnPI	CCDG	9 cut(s)	264, 341, 415, 435, 444, 603, 633, 676, 844
Lsp1109I	GCAGC	5 cut(s)	230, 233, 689, 697, 717
MaeI	CTAG	2 cut(s)	170, 392
MaeII	ACGT	1 cut(s)	59
MalI	GATC	7 cut(s)	90, 272, 363, 480, 510, 576, 628
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
MboII	GAAGA	6 cut(s)	217, 224, 293, 343, 518, 778
MflI	RGATCY	3 cut(s)	270, 508, 574
MhlI	GDGCHC	1 cut(s)	792
MlsI	TGGCCA	1 cut(s)	616
MluNI	TGGCCA	1 cut(s)	616
MnlI	CCTC	7 cut(s)	64, 172, 284, 380, 452, 597, 661
Mox20I	TGGCCA	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	616
MseI	TTAA	2 cut(s)	290, 803
Msp20I	TGGCCA	1 cut(s)	616
MspI	CCGG	4 cut(s)	328, 402, 431, 831
MspR9I	CCNGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	6 cut(s)	131, 227, 230, 699, 702, 735
NciI	CCSGG	1 cut(s)	402
NdeII	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
NlaIII	CATG	2 cut(s)	346, 733
NlaIV	GGNNCC	2 cut(s)	840, 841
NmeAIII	GCCGAG	1 cut(s)	451
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	631
PinAI	ACCGGT	1 cut(s)	830
PkrI	GCNGC	8 cut(s)	220, 223, 232, 692, 695, 704, 707, 712
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	60
PpuMI	RGGWCCY	1 cut(s)	839
Psp124BI	GAGCTC	1 cut(s)	792
Psp5II	RGGWCCY	1 cut(s)	839
PspCI	CACGTG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	840, 841
PspPI	GGNCC	1 cut(s)	839
PspPPI	RGGWCCY	1 cut(s)	839
PstI	CTGCAG	1 cut(s)	707
PsuI	RGATCY	3 cut(s)	270, 508, 574
RsaI	GTAC	2 cut(s)	412, 773
RsaNI	GTAC	2 cut(s)	411, 772
SacI	GAGCTC	1 cut(s)	792
SaqAI	TTAA	2 cut(s)	290, 803
SatI	GCNGC	8 cut(s)	219, 222, 231, 691, 694, 703, 706, 711
Sau3AI	GATC	7 cut(s)	88, 270, 361, 478, 508, 574, 626
Sau96I	GGNCC	1 cut(s)	839
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	792
SfcI	CTRYAG	1 cut(s)	703
SinI	GGWCC	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	346
SsiI	CCGC	5 cut(s)	231, 408, 690, 693, 696
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	2 cut(s)	170, 392
SstI	GAGCTC	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	5 cut(s)	391, 501, 540, 594, 843
TaaI	ACNGT	2 cut(s)	421, 475
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	625
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	3 cut(s)	233, 693, 696
Tru1I	TTAA	2 cut(s)	290, 803
Tru9I	TTAA	2 cut(s)	290, 803
TseI	GCWGC	5 cut(s)	218, 221, 702, 705, 710
TspGWI	ACGGA	2 cut(s)	217, 740
VpaK11BI	GGWCC	1 cut(s)	839
XceI	RCATGY	1 cut(s)	346
XmaJI	CCTAGG	1 cut(s)	391
XspI	CTAG	2 cut(s)	170, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.