Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001903

Physical Location & Seq

Genomic Coordinates Forward (+)

1691325 .. 1692335

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGGGTTTGCATGCTTGGAGATGCCCAGCATGTGGAAGAGGCAGAGAAGATGGGTTTGGATTATATGGATGTGGAGAGCTTGAAAAAGCTGAACAAGAACAAGAAACTTGTGAAGAAGCTTGCCAAGAAATACCATGCCTTTTTAGCTTCTGAAGCTGTCATTAAGCAGATTCCTCGTCTTCTTGGCCCTGGTCTTAACAAGGCAGGTAAGTTTCCAACCTTAGTGAGTCACCAGGAATCTCTGGAGGCAAAACTTAACGAGACCAAAGCTATGGTGAAGTTCCAACTTAAGAAGGTTCTTTGCATGGGTGTTGCTGTCGGGAATCTCGCTATGGAGGAGAAGCAGATTTTCCAGAATGTACAACTCAGTGTCAATTTCTTGGTTTCATTGTTGAAGAAGAACTGGCAGAATGTGAGGTCCTTGAACTTGAAGAGTACGATGGGGAAAGCTATCCGTATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

9.88

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	1 - 149	1.9e-38	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08360 AT2G27530 AT2G27530 AT5G22440 AT5G22440
fragaria_vesca	FvH4_3g24900 FvH4_3g24900 FvH4_6g18680
malus_domestica	MD03G1143900.v1.1 MD05G1199000.v1.1 MD12G1036100.v1.1 MD14G1002800.v1.1 MD14G1022900.v1.1
prunus_persica	Prupe.6G129700_v2.0.a1 Prupe.6G129700_v2.0.a1 Prupe.7G110300_v2.0.a1
pyrus_communis	pycom03g09940 pycom12g02380 pycom14g02180
rosa_chinensis	RchiOBHm_Chr3g0473651 RchiOBHm_Chr5g0044551 RchiOBHm_Chr5g0044561
rosa_laevigata	RLG00000023997 RLG00000034282 RLG00000034283
rosa_multiflora	Rmu_sc0003069.1_g000006 Rmu_sc0005978.1_g000001 Rmu_sc0006609.1_g000006
rosa_roxburghii	Rroxscaffold_1G00036410 Rroxscaffold_6G00407980
rosa_rugosa	Rorug03G0133500 Rorug03G0133600 Rorug05G0215200 Rorug05G0215300
rosa_samantha	Rh3AG185200 Rh3BG213200 Rh3CG209900 Rh3DG209000 Rh5AG299300 Rh5BG306800 Rh5CG333500 Rh5CG333600 Rh5DG316200
rosa_wichuraiana	Rw0G008910 Rw0G009840 Rw5G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	2 cut(s)	363, 439
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	85, 397, 427, 433
AjnI	CCWGG	2 cut(s)	190, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	7 cut(s)	81, 91, 121, 149, 158, 272, 452
AluI	AGCT	7 cut(s)	81, 91, 121, 149, 158, 272, 452
Alw26I	GTCTC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	188, 420
AsuHPI	GGTGA	2 cut(s)	224, 289
AvaII	GGWCC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	173
BccI	CCATC	2 cut(s)	46, 436
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	192, 236
BcoDI	GTCTC	1 cut(s)	257
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	192, 236
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	188, 420
BmrFI	CCNGG	2 cut(s)	192, 236
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	192, 236
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	257
Bsp1407I	TGTACA	1 cut(s)	361
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	192, 236
Bst6I	CTCTTC	2 cut(s)	33, 428
BstAFI	CTTAAG	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	14, 123
BstDEI	CTNAG	2 cut(s)	223, 368
BstF5I	GGATG	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstNI	CCWGG	2 cut(s)	192, 236
BstNSI	RCATGY	2 cut(s)	16, 35
BstSCI	CCNGG	2 cut(s)	190, 234
BstV2I	GAAGAC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	14, 123
Cfr13I	GGNCC	2 cut(s)	188, 420
Csp6I	GTAC	2 cut(s)	362, 438
CviAII	CATG	4 cut(s)	13, 32, 137, 307
CviJI	RGCY	8 cut(s)	81, 91, 121, 149, 158, 189, 272, 452
CviKI_1	RGCY	8 cut(s)	81, 91, 121, 149, 158, 189, 272, 452
CviQI	GTAC	2 cut(s)	362, 438
DdeI	CTNAG	2 cut(s)	223, 368
Eam1104I	CTCTTC	2 cut(s)	33, 428
EarI	CTCTTC	2 cut(s)	33, 428
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	190, 234
FaeI	CATG	4 cut(s)	16, 35, 140, 310
FaiI	YATR	8 cut(s)	14, 33, 66, 68, 138, 275, 308, 335
FatI	CATG	4 cut(s)	12, 31, 136, 306
FokI	GGATG	1 cut(s)	83
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	16, 35, 140, 310
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	172, 229, 239, 325
HphI	GGTGA	2 cut(s)	224, 289
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	245, 322, 355
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	12, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpyF3I	CTNAG	2 cut(s)	223, 368
Hsp92II	CATG	4 cut(s)	16, 35, 140, 310
LpnPI	CCDG	9 cut(s)	41, 177, 192, 204, 221, 230, 248, 368, 391
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	230
MboII	GAAGA	7 cut(s)	50, 61, 127, 173, 409, 412, 445
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	242, 310
MnlI	CCTC	5 cut(s)	34, 186, 241, 331, 411
MseI	TTAA	4 cut(s)	165, 198, 258, 291
MspCI	CTTAAG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	192, 236
MvaI	CCWGG	2 cut(s)	192, 236
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NlaIII	CATG	4 cut(s)	16, 35, 140, 310
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	16, 35
PaeI	GCATGC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	172, 239, 325
PflMI	CCANNNNNTGG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PpuMI	RGGWCCY	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	190, 234
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	190, 234
PspPI	GGNCC	2 cut(s)	188, 420
PspPPI	RGGWCCY	1 cut(s)	420
RsaI	GTAC	2 cut(s)	363, 439
RsaNI	GTAC	2 cut(s)	362, 438
SaqAI	TTAA	4 cut(s)	165, 198, 258, 291
Sau96I	GGNCC	2 cut(s)	188, 420
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	192, 236
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	190, 234
TasI	AATT	1 cut(s)	376
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	172, 239, 325
Tru1I	TTAA	4 cut(s)	165, 198, 258, 291
Tru9I	TTAA	4 cut(s)	165, 198, 258, 291
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	420
XceI	RCATGY	2 cut(s)	16, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.