Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Forward (+)

19686082 .. 19691550

Gene Structure 5469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATTCCTGCATGGAAAGGATCCTGGAAAGGTACGAAAGATACTCATATGCAGAGAGGCAGCTTCTTGCAAATGATAATGAATCCACTGGAAGCTGGACTCTGGAACACGCAAAGCTCAAGGCTAGGGTGGAGGTTTTACAAAGAAATCAAAGAAACTATATGGGCTCAACAAGAAGATCTCCAATCCTTAAGTCTCAAAGAGCTTCAAAATTTAGAGCAACAGCTTGATTCTGCACTGAAGCACATAAGGTCAAGAAAGAACCAAGTTATGCACGAATCGATTTCTGAGCTCCAGAAGAAGGATAAGGCATTGCAGGAGCAAAACAACTTGCTGGCAAAGAAGGTGAAGCAGAAGGAGAAAGCAGTAGCTCAACAGCCACAATTGGAGCATGCGCAGGAGCAGAGGTTGGACTCCTCTTCCTCCCTTCTTCCACAGGCATTGCAGTCCTTGAACTTCGGCAGCGGGTCCAATTACCGGGTCATTAGATCAAGTGAGGGAATACCAGGAGATAATCAGCAGGATGGAGATGAAACCCCAACTCCACGTAGACCTAACATGCTGCTGCCCCCTTGGATGCTCCGCCACCTTAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

200

Amino Acids

22.98

Weight (kDa)

9.3

Isoelectric Point (pI)

67.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	59 - 116	4.3e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	550
AciI	CCGC	2 cut(s)	465, 583
AclWI	GGATC	2 cut(s)	15, 28
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	301, 477
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	209, 454
AjnI	CCWGG	2 cut(s)	23, 505
AluBI	AGCT	7 cut(s)	63, 95, 117, 205, 226, 292, 371
AluI	AGCT	7 cut(s)	63, 95, 117, 205, 226, 292, 371
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	15, 28
ApeKI	GCWGC	4 cut(s)	60, 462, 562, 565
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	468
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	468
BamHI	GGATCC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	169, 294
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	72, 474, 549, 552
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	2 cut(s)	25, 507
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	190
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	4 cut(s)	61, 463, 563, 566
BlsI	GCNGC	4 cut(s)	62, 464, 564, 567
Bme1390I	CCNGG	3 cut(s)	25, 479, 507
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	2 cut(s)	22, 469
BmrFI	CCNGG	3 cut(s)	25, 479, 507
BmsI	GCATC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	572
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 477
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	2 cut(s)	311, 440
BseBI	CCWGG	2 cut(s)	25, 507
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	2 cut(s)	529, 582
BseLI	CCNNNNNNNGG	2 cut(s)	301, 477
BseMI	GCAATG	2 cut(s)	311, 440
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	4 cut(s)	72, 474, 549, 552
BsgI	GTGCAG	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	301, 477
BsmAI	GTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	169, 294
Bsp143I	GATC	3 cut(s)	20, 178, 488
BspACI	CCGC	2 cut(s)	465, 583
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	22, 469
BspPI	GGATC	2 cut(s)	15, 28
BspTI	CTTAAG	1 cut(s)	190
BsrDI	GCAATG	2 cut(s)	311, 440
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	3 cut(s)	20, 178, 488
BssT1I	CCWWGG	1 cut(s)	572
Bst2UI	CCWGG	2 cut(s)	25, 507
Bst6I	CTCTTC	1 cut(s)	424
BstAFI	CTTAAG	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	336, 393
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	529, 582
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	3 cut(s)	23, 181, 491
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	20, 178, 488
BstNI	CCWGG	2 cut(s)	25, 507
BstNSI	RCATGY	2 cut(s)	395, 562
BstSCI	CCNGG	3 cut(s)	23, 477, 505
BstV1I	GCAGC	4 cut(s)	72, 474, 549, 552
BstX2I	RGATCY	2 cut(s)	20, 178
BstYI	RGATCY	2 cut(s)	20, 178
Bsu15I	ATCGAT	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	529, 582
BtsIMutI	CAGTG	2 cut(s)	86, 236
Cac8I	GCNNGC	2 cut(s)	336, 393
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	468
ClaI	ATCGAT	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	33
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	3 cut(s)	12, 392, 559
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	3 cut(s)	22, 180, 490
DpnII	GATC	3 cut(s)	20, 178, 488
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
EciI	GGCGGA	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	572
Eco24I	GRGCYC	2 cut(s)	169, 294
Eco47I	GGWCC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	23, 505
EcoT14I	CCWWGG	1 cut(s)	572
EcoT38I	GRGCYC	2 cut(s)	169, 294
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	3 cut(s)	15, 395, 562
FaiI	YATR	9 cut(s)	13, 48, 50, 161, 163, 248, 272, 393, 560
FatI	CATG	3 cut(s)	11, 391, 558
FauI	CCCGC	1 cut(s)	458
FauNDI	CATATG	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	61, 463, 563, 566
FokI	GGATG	2 cut(s)	536, 589
FriOI	GRGCYC	2 cut(s)	169, 294
Fsp4HI	GCNGC	4 cut(s)	61, 463, 563, 566
FspBI	CTAG	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	396
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	4 cut(s)	61, 463, 563, 566
GsuI	CTGGAG	1 cut(s)	278
HapII	CCGG	1 cut(s)	478
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	15, 395, 562
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	6 cut(s)	4, 82, 99, 230, 278, 413
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	103, 255, 295
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	4 cut(s)	295, 337, 349, 437
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	7 cut(s)	11, 52, 70, 236, 274, 316, 445
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	3 cut(s)	15, 395, 562
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	3 cut(s)	20, 178, 488
LmnI	GCTCC	5 cut(s)	297, 319, 388, 400, 585
Lsp1109I	GCAGC	4 cut(s)	72, 474, 549, 552
LweI	GCATC	1 cut(s)	567
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	547
MalI	GATC	3 cut(s)	22, 180, 490
MboI	GATC	3 cut(s)	20, 178, 488
MboII	GAAGA	4 cut(s)	188, 310, 411, 422
MfeI	CAATTG	1 cut(s)	383
MflI	RGATCY	2 cut(s)	20, 178
MhlI	GDGCHC	2 cut(s)	169, 294
MluCI	AATT	3 cut(s)	211, 383, 472
MlyI	GAGTC	2 cut(s)	93, 407
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	50, 126, 399, 427, 433, 490
MseI	TTAA	2 cut(s)	191, 591
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	465
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	3 cut(s)	25, 479, 507
MunI	CAATTG	1 cut(s)	383
MvaI	CCWGG	2 cut(s)	25, 507
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	48
NdeII	GATC	3 cut(s)	20, 178, 488
NlaIII	CATG	3 cut(s)	15, 395, 562
NlaIV	GGNNCC	2 cut(s)	22, 469
NsbI	TGCGCA	1 cut(s)	396
NspI	RCATGY	2 cut(s)	395, 562
PaeI	GCATGC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	4, 82, 230, 278
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	62, 464, 564, 567
PleI	GAGTC	2 cut(s)	93, 407
PpsI	GAGTC	2 cut(s)	93, 407
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	23, 505
PspGI	CCWGG	2 cut(s)	23, 505
PspN4I	GGNNCC	2 cut(s)	22, 469
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	20, 178
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	191, 591
SatI	GCNGC	4 cut(s)	61, 463, 563, 566
Sau3AI	GATC	3 cut(s)	20, 178, 488
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	2 cut(s)	93, 407
ScrFI	CCNGG	3 cut(s)	25, 479, 507
SduI	GDGCHC	2 cut(s)	169, 294
SfaNI	GCATC	1 cut(s)	567
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	118, 190
SmoI	CTYRAG	2 cut(s)	118, 190
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	211, 383, 472
SsiI	CCGC	2 cut(s)	465, 583
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	23, 477, 505
StyI	CCWWGG	1 cut(s)	572
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	1 cut(s)	281
TasI	AATT	3 cut(s)	211, 383, 472
TfiI	GAWTC	4 cut(s)	4, 82, 230, 278
Tru1I	TTAA	2 cut(s)	191, 591
Tru9I	TTAA	2 cut(s)	191, 591
TscAI	CASTG	2 cut(s)	93, 243
TseI	GCWGC	4 cut(s)	60, 462, 562, 565
TspDTI	ATGAA	2 cut(s)	95, 546
TspRI	CASTG	2 cut(s)	93, 243
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	468
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	2 cut(s)	395, 562
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.