Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

774738 .. 776317

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGACAGAACCAATCCCTTACGCATCTCCCGATGACGCTGCGAAGACGGAGAACAAGAAGAAGAATCGCAAGAGAAAGAGAGGAAGCAAACCATCGGAATCGAATACAACTTGCACGGAAGAATCAGAGTCTCAAAACCTTAATCAGACCGACAAAGAAGATAAAGGAGAAGGTGATTGGGAACAAGATAAGGATGACATTAATAAGAGACATCGATTAAGACCTCAGGTCACAGTAGACTATTGTAATGTGGCTAGTTCGCAAAGAATAGCTCTCCTATATTCTTTTATGGGGAAGCACCAGTATACGAAAGGGATAGTCTTCTTCAGTTCTTGTGACTCAGTCAAATTCCACTCTGACCTTCTTCGATCCCTTAATGCGAATTGCTTTGGTGTCCATGAAAAGCAAACGCAGCAGGAGAGGACAACTACTTTTTTTGACTTCTGCAAAGCAGAGGAGGGGTTCTTACTTTGTACTAATGTTGCTCCTTGTGGACTGGATATTCCTGCACTGGACTGGATTTTGCAGTTTGATCCTCCAGATGACCTCATGGAATACCTACGCGGGGTTGTTCGAAGAGCTCGAGGGGAATGCGAAGTAGGAAAGGAATTCCTTTTCCTCATTCCTGAAGAGATGCGAATTATACGCTTTTTGGAGGCCGCCAATATCTTCCTTCGATCTCGGGTATTTAAGGTGAATAGAAAAGTGCAGGCTCAACTGGAGAAGACGGTTGGGGACAACTACCACCTGCGCAAATCAGCAAAAGAAGCGTATGAATCGTATCTAATAGCATATAATTCACACTCCATGAAGGACTATTTTAATTTCGACCGGCTCGATTTGCAGGGCGTTGCAGATTCGTTTTGCGTTTCGATACCCACACGCCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

298

Amino Acids

34.38

Weight (kDa)

7.0

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	90 - 195	1e-14	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	247 - 289	4.1e-12	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	756
Acc16I	TGCGCA	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	756
AccI	GTMKAC	2 cut(s)	237, 305
AccII	CGCG	1 cut(s)	564
AciI	CCGC	2 cut(s)	564, 660
AclWI	GGATC	2 cut(s)	363, 527
AcsI	RAATTY	2 cut(s)	347, 608
AcuI	CTGAAG	2 cut(s)	310, 648
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	565
AhdI	GACNNNNNGTC	1 cut(s)	227
AluBI	AGCT	2 cut(s)	272, 581
AluI	AGCT	2 cut(s)	272, 581
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	2 cut(s)	135, 202
AlwI	GGATC	2 cut(s)	363, 527
Ama87I	CYCGRG	2 cut(s)	582, 681
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	38, 412
ApoI	RAATTY	2 cut(s)	347, 608
AseI	ATTAAT	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	753
AsuHPI	GGTGA	2 cut(s)	185, 706
AsuII	TTCGAA	1 cut(s)	574
AvaI	CYCGRG	2 cut(s)	582, 681
AxyI	CCTNAGG	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	583
BbsI	GAAGAC	3 cut(s)	50, 313, 731
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	2 cut(s)	25, 424
BccI	CCATC	1 cut(s)	100
BcgI	CGANNNNNNTGC	4 cut(s)	20, 54, 573, 607
BcoDI	GTCTC	2 cut(s)	135, 202
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	756
BisI	GCNGC	3 cut(s)	39, 413, 660
BlsI	GCNGC	3 cut(s)	40, 414, 661
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmeT110I	CYCGRG	2 cut(s)	582, 681
BmsI	GCATC	2 cut(s)	32, 624
BpiI	GAAGAC	3 cut(s)	50, 313, 731
BpmI	CTGGAG	2 cut(s)	522, 740
Bpu14I	TTCGAA	1 cut(s)	574
Bsa29I	ATCGAT	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse118I	RCCGGY	1 cut(s)	831
Bse1I	ACTGG	5 cut(s)	301, 501, 516, 521, 723
Bse21I	CCTNAGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	214
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	239, 354
BseNI	ACTGG	5 cut(s)	301, 501, 516, 521, 723
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	25, 424
BsgI	GTGCAG	2 cut(s)	492, 728
Bsh1236I	CGCG	1 cut(s)	564
Bsh1285I	CGRYCG	1 cut(s)	832
BshFI	GGCC	1 cut(s)	659
BshVI	ATCGAT	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	2 cut(s)	582, 681
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmAI	GTCTC	2 cut(s)	135, 202
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	659
BsoBI	CYCGRG	2 cut(s)	582, 681
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	368, 532, 677
BspACI	CCGC	2 cut(s)	564, 660
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	2 cut(s)	238, 353
BspDI	ATCGAT	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	756
BspPI	GGATC	2 cut(s)	363, 527
BspQI	GCTCTTC	1 cut(s)	571
BspT104I	TTCGAA	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	831
BsrI	ACTGG	5 cut(s)	301, 501, 516, 521, 723
BssAI	RCCGGY	1 cut(s)	831
BssMI	GATC	3 cut(s)	368, 532, 677
BssNAI	GTATAC	1 cut(s)	306
Bst1107I	GTATAC	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	235, 730
Bst6I	CTCTTC	2 cut(s)	571, 624
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	2 cut(s)	225, 340
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	371, 535, 680
BstMAI	GTCTC	2 cut(s)	135, 202
BstMBI	GATC	3 cut(s)	368, 532, 677
BstMCI	CGRYCG	1 cut(s)	832
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 767, 841
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	25, 424
BstV2I	GAAGAC	3 cut(s)	50, 313, 731
BstZ17I	GTATAC	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	214
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	659
BsuTUI	ATCGAT	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	756
Cac8I	GCNNGC	1 cut(s)	711
CfoI	GCGC	1 cut(s)	753
Cfr10I	RCCGGY	1 cut(s)	831
ClaI	ATCGAT	1 cut(s)	214
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	3 cut(s)	398, 550, 808
CviJI	RGCY	6 cut(s)	254, 272, 581, 659, 713, 835
CviKI_1	RGCY	6 cut(s)	254, 272, 581, 659, 713, 835
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	225, 340
DpnI	GATC	3 cut(s)	370, 534, 679
DpnII	GATC	3 cut(s)	368, 532, 677
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	2 cut(s)	571, 624
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	2 cut(s)	571, 624
Ecl136II	GAGCTC	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	310, 648
Eco81I	CCTNAGG	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	582, 681
EcoICRI	GAGCTC	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	583
FaeI	CATG	3 cut(s)	401, 553, 811
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	397, 549, 807
FauI	CCCGC	1 cut(s)	557
FblI	GTMKAC	2 cut(s)	237, 305
Fnu4HI	GCNGC	3 cut(s)	39, 413, 660
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	3 cut(s)	39, 413, 660
FspBI	CTAG	1 cut(s)	255
FspI	TGCGCA	1 cut(s)	752
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	3 cut(s)	39, 413, 660
GsuI	CTGGAG	2 cut(s)	522, 740
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	1 cut(s)	832
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	753
Hin1II	CATG	3 cut(s)	401, 553, 811
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HinfI	GANTC	7 cut(s)	64, 98, 122, 128, 338, 776, 857
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	2 cut(s)	185, 706
Hpy166II	GTNNAC	3 cut(s)	238, 306, 494
Hpy188I	TCNGA	4 cut(s)	97, 127, 147, 358
Hpy188III	TCNNGA	3 cut(s)	29, 539, 626
Hpy8I	GTNNAC	3 cut(s)	238, 306, 494
HpyAV	CCTTC	4 cut(s)	164, 371, 683, 805
HpyCH4III	ACNGT	2 cut(s)	235, 730
HpyCH4V	TGCA	7 cut(s)	114, 447, 509, 526, 709, 844, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 767, 841
HpyF3I	CTNAG	2 cut(s)	225, 340
Hsp92II	CATG	3 cut(s)	401, 553, 811
HspAI	GCGC	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	368, 532, 677
LguI	GCTCTTC	1 cut(s)	571
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	2 cut(s)	25, 424
LweI	GCATC	2 cut(s)	32, 624
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	229, 335
MalI	GATC	3 cut(s)	370, 534, 679
MboI	GATC	3 cut(s)	368, 532, 677
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	6 cut(s)	347, 382, 608, 639, 796, 823
MlyI	GAGTC	2 cut(s)	137, 332
MseI	TTAA	6 cut(s)	141, 201, 218, 375, 690, 822
MspI	CCGG	1 cut(s)	832
Mva1269I	GAATGC	1 cut(s)	596
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	412, 767, 841
NdeII	GATC	3 cut(s)	368, 532, 677
NlaIII	CATG	3 cut(s)	401, 553, 811
NmuCI	GTSAC	2 cut(s)	229, 335
NsbI	TGCGCA	1 cut(s)	752
NspV	TTCGAA	1 cut(s)	574
PaeR7I	CTCGAG	1 cut(s)	582
PaqCI	CACCTGC	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 580, 834
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	5 cut(s)	64, 98, 122, 776, 857
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	40, 414, 661
PleI	GAGTC	2 cut(s)	136, 332
PpsI	GAGTC	2 cut(s)	136, 332
PshBI	ATTAAT	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	583
PspXI	VCTCGAGB	1 cut(s)	582
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	571
SaqAI	TTAA	6 cut(s)	141, 201, 218, 375, 690, 822
SatI	GCNGC	3 cut(s)	39, 413, 660
Sau3AI	GATC	3 cut(s)	368, 532, 677
SchI	GAGTC	2 cut(s)	137, 332
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	2 cut(s)	32, 624
Sfr274I	CTCGAG	1 cut(s)	582
SfuI	TTCGAA	1 cut(s)	574
SlaI	CTCGAG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	6 cut(s)	347, 382, 608, 639, 796, 823
SsiI	CCGC	2 cut(s)	564, 660
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	583
TaaI	ACNGT	2 cut(s)	235, 730
TaqI	TCGA	9 cut(s)	101, 214, 367, 574, 583, 676, 828, 837, 872
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	6 cut(s)	347, 382, 608, 639, 796, 823
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	5 cut(s)	64, 98, 122, 776, 857
Tru1I	TTAA	6 cut(s)	141, 201, 218, 375, 690, 822
Tru9I	TTAA	6 cut(s)	141, 201, 218, 375, 690, 822
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	2 cut(s)	229, 335
TseI	GCWGC	2 cut(s)	38, 412
Tsp45I	GTSAC	2 cut(s)	229, 335
TspDTI	ATGAA	3 cut(s)	414, 789, 824
TspGWI	ACGGA	2 cut(s)	62, 131
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	2 cut(s)	347, 608
XhoI	CTCGAG	1 cut(s)	582
XmiI	GTMKAC	2 cut(s)	237, 305
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.