pycom15g10900

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004102
Physical Location & Seq
Forward (+)
7316988 .. 7318941
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 660 bp
ATGGTAATTACAAGATTAACCCGATACAAAATAATTCAGATTCTGAGCGACTCTCGCGCACAAAATTTGGCAATCGCTGCGTCCCGCACTCCGCAGAGGAGAAATAATCAAAAACACCAAACAAATTCTCACCGAGAGGCCGCTAAAATGTGGAGGCGCGTGGCATCTACTTCCTCGGCTCAGCTCCAAAACCTCGCCGCCTCAGCCTCACGCAGATACTCGTCTCTCAATCCCACCCGTCGGTTCGTAACCTCCTCGGCGCCTTCCCCTTCGTCGACGCCGTTGGCCAAATCCGCGCCTCCCTCTTCCCCCCACATTGCCTCCGCTTCCACCTCCGCTCTCAAGAAAAACCCTCAAGAAGTTCATCCGGCTGCTACCGGTCACGAGCTTGAGGAACTTGCTGCCGAGCTTGAGGGAAGGGACGTTCTTGAAATCAATTATCCTGTTGGTCCCTTCGGTACCAAGGAAGCACCTGCAATCGTCAAGTCTGTCTATGACAAAAGAATAGTTGGATGCCCTGGTATTGAAGGAGGAGAAGATGAGCACGATGTCGTGTGGTTTTGGCTGGAGAAAGGAAAGATATATGAATGCCCTGTCTGTACCCAAGTTTTTAAGCTGGAAGTGGTTGGCAAAGGAGGTCCTCCAGACGGTCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

220

Amino Acids

23.91

Weight (kDa)

9.43

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 124 - 213 1.8e-18 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 481
Acc36I ACCTGC 1 cut(s) 481
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 2 cut(s) 259, 458
AccBSI CCGCTC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 275
AccII CGCG 3 cut(s) 57, 159, 296
AciI CCGC 7 cut(s) 85, 92, 141, 198, 294, 324, 336
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 64, 124
AcyI GRCGYC 2 cut(s) 260, 278
AfaI GTAC 2 cut(s) 460, 601
AfiI CCNNNNNNNGG 2 cut(s) 240, 647
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 2 cut(s) 431, 527
AjnI CCWGG 1 cut(s) 517
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 4 cut(s) 184, 388, 409, 616
AluI AGCT 4 cut(s) 184, 388, 409, 616
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 2 cut(s) 138, 285
ApeKI GCWGC 3 cut(s) 77, 371, 401
ApoI RAATTY 2 cut(s) 64, 124
AsiGI ACCGGT 1 cut(s) 377
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 4 cut(s) 59, 159, 262, 298
AspS9I GGNCC 2 cut(s) 449, 638
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 449, 638
BalI TGGCCA 1 cut(s) 287
BanI GGYRCC 2 cut(s) 259, 458
BauI CACGAG 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 546
BbvCI CCTCAGC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 64, 358, 388
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 5 cut(s) 78, 141, 198, 372, 402
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 5 cut(s) 79, 142, 199, 373, 403
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 2 cut(s) 449, 638
BmgT120I GGNCC 2 cut(s) 449, 638
BmiI GGNNCC 3 cut(s) 261, 451, 460
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 173, 503
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 2 cut(s) 587, 627
Bpu10I CCTNAGC 1 cut(s) 202
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 4 cut(s) 326, 339, 410, 431
BsaHI GRCGYC 2 cut(s) 260, 278
BsaJI CCNNGG 4 cut(s) 174, 255, 462, 517
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 647
Bse118I RCCGGY 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 4 cut(s) 174, 255, 462, 517
BseGI GGATG 2 cut(s) 364, 518
BseLI CCNNNNNNNGG 2 cut(s) 240, 647
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 35, 194, 216
BseRI GAGGAG 3 cut(s) 112, 244, 546
BseXI GCAGC 3 cut(s) 64, 358, 388
Bsh1236I CGCG 3 cut(s) 57, 159, 296
BshFI GGCC 2 cut(s) 140, 287
BshNI GGYRCC 2 cut(s) 259, 458
BshTI ACCGGT 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 2 cut(s) 368, 378
BslFI GGGAC 3 cut(s) 67, 434, 435
BslI CCNNNNNNNGG 2 cut(s) 240, 647
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 67, 434, 435
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 140, 287
Bsp1286I GDGCHC 1 cut(s) 546
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 7 cut(s) 85, 92, 141, 198, 294, 324, 336
BspANI GGCC 2 cut(s) 140, 287
BspCNI CTCAG 3 cut(s) 36, 193, 215
BspFNI CGCG 3 cut(s) 57, 159, 296
BspLI GGNNCC 3 cut(s) 261, 451, 460
BspMI ACCTGC 1 cut(s) 481
BspT107I GGYRCC 2 cut(s) 259, 458
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 174, 255, 462, 517
BssNI GRCGYC 2 cut(s) 260, 278
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 260, 278
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 44, 180, 202
BstF5I GGATG 2 cut(s) 364, 518
BstFNI CGCG 3 cut(s) 57, 159, 296
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 4 cut(s) 59, 159, 262, 298
BstMAI GTCTC 1 cut(s) 228
BstMWI GCNNNNNNNGC 4 cut(s) 54, 77, 203, 293
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstUI CGCG 3 cut(s) 57, 159, 296
BstV1I GCAGC 3 cut(s) 64, 358, 388
BsuRI GGCC 2 cut(s) 140, 287
BtsCI GGATG 2 cut(s) 364, 518
BveI ACCTGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 4 cut(s) 59, 159, 262, 298
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 449, 638
CseI GACGC 2 cut(s) 69, 286
Csp6I GTAC 2 cut(s) 459, 600
CspAI ACCGGT 1 cut(s) 377
CviQI GTAC 2 cut(s) 459, 600
DdeI CTNAG 3 cut(s) 44, 180, 202
DinI GGCGCC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 462
Eco47I GGWCC 2 cut(s) 449, 638
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 462
EgeI GGCGCC 1 cut(s) 261
EheI GGCGCC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 462
Esp3I CGTCTC 1 cut(s) 228
FaiI YATR 3 cut(s) 495, 583, 585
FaqI GGGAC 3 cut(s) 67, 434, 435
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 5 cut(s) 78, 141, 198, 372, 402
FokI GGATG 2 cut(s) 351, 525
Fsp4HI GCNGC 5 cut(s) 78, 141, 198, 372, 402
GlaI GCGC 4 cut(s) 58, 158, 261, 297
GluI GCNGC 5 cut(s) 78, 141, 198, 372, 402
GsuI CTGGAG 2 cut(s) 587, 627
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 2 cut(s) 140, 287
HapII CCGG 2 cut(s) 368, 378
HgaI GACGC 2 cut(s) 69, 286
HhaI GCGC 4 cut(s) 59, 159, 262, 298
Hin1I GRCGYC 2 cut(s) 260, 278
Hin6I GCGC 4 cut(s) 57, 157, 260, 296
HinP1I GCGC 4 cut(s) 57, 157, 260, 296
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 2 cut(s) 40, 50
HpaII CCGG 2 cut(s) 368, 378
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 39, 45
Hpy188III TCNNGA 5 cut(s) 343, 356, 383, 428, 644
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 3 cut(s) 243, 277, 280
HpyAV CCTTC 5 cut(s) 273, 279, 411, 463, 521
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 77, 203, 293
HpyF3I CTNAG 3 cut(s) 44, 180, 202
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 2 cut(s) 260, 278
HspAI GCGC 4 cut(s) 57, 157, 260, 296
KasI GGCGCC 1 cut(s) 259
KpnI GGTACC 1 cut(s) 462
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 9 cut(s) 381, 391, 456, 486, 504, 531, 551, 602, 606
Lsp1109I GCAGC 3 cut(s) 64, 358, 388
LweI GCATC 2 cut(s) 173, 503
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 247, 380
MbiI CCGCTC 1 cut(s) 338
MboII GAAGA 2 cut(s) 297, 548
MhlI GDGCHC 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 5 cut(s) 6, 33, 64, 124, 436
MluNI TGGCCA 1 cut(s) 287
Mly113I GGCGCC 1 cut(s) 260
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 490
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 2 cut(s) 17, 612
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 2 cut(s) 368, 378
MspR9I CCNGG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 3 cut(s) 57, 159, 296
MwoI GCNNNNNNNGC 4 cut(s) 54, 77, 203, 293
NarI GGCGCC 1 cut(s) 260
NlaIV GGNNCC 3 cut(s) 261, 451, 460
NmeAIII GCCGAG 3 cut(s) 155, 236, 430
NmuCI GTSAC 1 cut(s) 380
PaqCI CACCTGC 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 377
PkrI GCNGC 5 cut(s) 79, 142, 199, 373, 403
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 3 cut(s) 261, 451, 460
PspPI GGNCC 2 cut(s) 449, 638
PspPPI RGGWCCY 1 cut(s) 638
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 2 cut(s) 460, 601
RsaNI GTAC 2 cut(s) 459, 600
SalI GTCGAC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 17, 612
SatI GCNGC 5 cut(s) 78, 141, 198, 372, 402
Sau96I GGNCC 2 cut(s) 449, 638
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 2 cut(s) 173, 503
SfoI GGCGCC 1 cut(s) 261
SgrDI CGTCGACG 1 cut(s) 274
SinI GGWCC 2 cut(s) 449, 638
SmlI CTYRAG 4 cut(s) 341, 354, 389, 410
SmoI CTYRAG 4 cut(s) 341, 354, 389, 410
Sse9I AATT 5 cut(s) 6, 33, 64, 124, 436
SsiI CCGC 7 cut(s) 85, 92, 141, 198, 294, 324, 336
SspDI GGCGCC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 275
TasI AATT 5 cut(s) 6, 33, 64, 124, 436
TauI GCSGC 2 cut(s) 143, 200
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 17, 612
Tru9I TTAA 2 cut(s) 17, 612
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 3 cut(s) 77, 371, 401
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 353, 600
VpaK11BI GGWCC 2 cut(s) 449, 638
XapI RAATTY 2 cut(s) 64, 124
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.