Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005391

Physical Location & Seq

Genomic Coordinates Forward (+)

8129208 .. 8130424

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGTGCATATCGTGCCTGGAGGACTACGAATCCGACGACGCCGGCACCTGCAAGGAGTGCTACGAGGAGGCCAACGAGACCGAGGAGGAGCTCAAGCGCGAGATCGACGACCTCAAGGCCAAGGTCGCCTTCCTCCGCCTCACTCGCTCCCTCCCCGCCTCCTTCTCCGACGTCGTTTTGGTTGCCTCCGAGGATGCCTCCGCCGGCTCCGCCGTGCCTGTGCCGGCCCATAAGGCCGTTTTGGTGAGCCGTTCTCCGGTGTTCAAAGCCATGCTTGAGAATGAGATGGAAGAGAGCCTGAGTGGCACCATCAAGATCAGTGATGTGTCCTATGACGCCCTTCGTGCCTTCGTCAACTACCTCTACACGGCAGAGGTATGCCTTGACGAGGACATGGCGTGTAACCTCCTAGTACTGGCTGAAAAATACCAAGTGCAGCATCTCAAGGTCCATTGCGAGAAGTTCTTGGTGTCAAAACTGAACTGGGAAAATTCCGTTTTGAGCTACACCTTTGCGCACCAGCATAATGCAAAGCATATCATTGACTCGGCATTGACATTGATCACAGACAACATGGACAAGCTTACTGCCCGGGAGGAGTACCTGGAGCTAGTGGAGAAAGATCCCCGACTTGTAGTCGAAATCTATGAAGCTTATCTCTCCAAACAGGTGAATACAGCTGCCCAGAAGGATTCTTCCGTGAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

238

Amino Acids

26.63

Weight (kDa)

4.75

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	54 - 160	2.8e-25	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08455
fragaria_vesca	FvH4_2g28021
malus_domestica	MD15G1132500.v1.1 MD15G1132600.v1.1 MD15G1132700.v1.1 MD15G1132800.v1.1
prunus_persica	Prupe.1G487700_v2.0.a1 Prupe.1G487700_v2.0.a1 Prupe.1G487800_v2.0.a1 Prupe.1G487900_v2.0.a1 Prupe.1G488000_v2.0.a1 Prupe.1G488100_v2.0.a1 Prupe.1G488200_v2.0.a1 Prupe.1G488300_v2.0.a1 Prupe.1G488400_v2.0.a1 Prupe.2G185900_v2.0.a1 Prupe.2G186000_v2.0.a1
pyrus_communis	pycom15g11960 pycom15g11970
rosa_chinensis	RchiOBHm_Chr6g0296891
rosa_laevigata	RLG00000011648
rosa_multiflora	Rmu_sc0018303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00171050
rosa_rugosa	Rorug06G0267400
rosa_samantha	Rh6AG378100 Rh6BG386100 Rh6CG391500 Rh6DG378800
rosa_wichuraiana	Rw6G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	59
AatII	GACGTC	1 cut(s)	177
Acc16I	TGCGCA	1 cut(s)	519
Acc36I	ACCTGC	1 cut(s)	59
AccB1I	GGYRCC	2 cut(s)	47, 308
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	139, 159, 204, 213
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	493
AcyI	GRCGYC	3 cut(s)	42, 174, 339
AfaI	GTAC	2 cut(s)	417, 605
AfiI	CCNNNNNNNGG	4 cut(s)	259, 370, 391, 418
AgsI	TTSAA	1 cut(s)	268
AhdI	GACNNNNNGTC	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	18, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	94, 507, 586, 613, 656, 683
AluI	AGCT	6 cut(s)	94, 507, 586, 613, 656, 683
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	4 cut(s)	72, 120, 228, 237
ApeKI	GCWGC	2 cut(s)	439, 683
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	2 cut(s)	102, 520
AspS9I	GGNCC	2 cut(s)	229, 451
AsuC2I	CCSGG	2 cut(s)	595, 596
AsuHPI	GGTGA	2 cut(s)	259, 685
AvaI	CYCGRG	1 cut(s)	594
AvaII	GGWCC	1 cut(s)	451
BanI	GGYRCC	2 cut(s)	47, 308
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	451, 670
BccI	CCATC	2 cut(s)	283, 320
BceAI	ACGGC	4 cut(s)	200, 224, 237, 387
BciT130I	CCWGG	2 cut(s)	20, 608
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	2 cut(s)	595, 596
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	413, 614
BfuAI	ACCTGC	1 cut(s)	59
BglI	GCCNNNNNGGC	2 cut(s)	236, 306
BisI	GCNGC	2 cut(s)	440, 684
BlsI	GCNGC	2 cut(s)	441, 685
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	4 cut(s)	20, 595, 596, 608
Bme18I	GGWCC	1 cut(s)	451
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	229, 451
BmiI	GGNNCC	3 cut(s)	49, 211, 310
BmrFI	CCNGG	4 cut(s)	20, 595, 596, 608
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	2 cut(s)	187, 451
BmuI	ACTGGG	1 cut(s)	496
BplI	GAGNNNNNCTC	4 cut(s)	185, 217, 241, 273
BpmI	CTGGAG	2 cut(s)	41, 629
BpuEI	CTTGAG	4 cut(s)	80, 101, 299, 431
BpuMI	CCSGG	2 cut(s)	595, 596
BsaHI	GRCGYC	3 cut(s)	42, 174, 339
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	84, 123, 192, 594
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 370, 391, 418
Bse118I	RCCGGY	3 cut(s)	44, 206, 226
Bse1I	ACTGG	2 cut(s)	423, 491
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	20, 608
BseDI	CCNNGG	4 cut(s)	84, 123, 192, 594
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	4 cut(s)	259, 370, 391, 418
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	423, 491
BseRI	GAGGAG	4 cut(s)	83, 101, 104, 614
BseXI	GCAGC	2 cut(s)	451, 670
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	74, 122, 230, 239
BshNI	GGYRCC	2 cut(s)	47, 308
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	5 cut(s)	45, 207, 227, 260, 595
BslI	CCNNNNNNNGG	4 cut(s)	259, 370, 391, 418
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	74, 122, 230, 239
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	105, 318, 564, 625
BspACI	CCGC	4 cut(s)	139, 159, 204, 213
BspANI	GGCC	4 cut(s)	74, 122, 230, 239
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	49, 211, 310
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	2 cut(s)	47, 308
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	3 cut(s)	44, 206, 226
BsrI	ACTGG	2 cut(s)	423, 491
BssAI	RCCGGY	3 cut(s)	44, 206, 226
BssECI	CCNNGG	4 cut(s)	84, 123, 192, 594
BssMI	GATC	4 cut(s)	105, 318, 564, 625
BssNI	GRCGYC	3 cut(s)	42, 174, 339
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	20, 608
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	3 cut(s)	42, 174, 339
BstAPI	GCANNNNNTGC	2 cut(s)	15, 60
BstC8I	GCNNGC	3 cut(s)	46, 208, 228
BstDEI	CTNAG	1 cut(s)	302
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	102, 520
BstKTI	GATC	4 cut(s)	108, 321, 567, 628
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	105, 318, 564, 625
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 60, 128, 147, 212, 236, 306, 347
BstNI	CCWGG	2 cut(s)	20, 608
BstSCI	CCNGG	4 cut(s)	18, 593, 594, 606
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	451, 670
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	74, 122, 230, 239
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	3 cut(s)	46, 208, 228
CfoI	GCGC	2 cut(s)	102, 520
Cfr10I	RCCGGY	3 cut(s)	44, 206, 226
Cfr13I	GGNCC	2 cut(s)	229, 451
Cfr9I	CCCGGG	1 cut(s)	594
CseI	GACGC	2 cut(s)	50, 347
Csp6I	GTAC	2 cut(s)	416, 604
CviAII	CATG	3 cut(s)	274, 397, 577
CviQI	GTAC	2 cut(s)	416, 604
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	4 cut(s)	107, 320, 566, 627
DpnII	GATC	4 cut(s)	105, 318, 564, 625
DriI	GACNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	3 cut(s)	128, 193, 202
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	18, 606
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	277, 400, 580
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 261, 293
FatI	CATG	3 cut(s)	273, 396, 576
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	440, 684
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	440, 684
FspBI	CTAG	2 cut(s)	413, 614
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	2 cut(s)	101, 519
GluI	GCNGC	2 cut(s)	440, 684
GsuI	CTGGAG	2 cut(s)	41, 629
HaeIII	GGCC	4 cut(s)	74, 122, 230, 239
HapII	CCGG	5 cut(s)	45, 207, 227, 260, 595
HgaI	GACGC	2 cut(s)	50, 347
HhaI	GCGC	2 cut(s)	102, 520
Hin1I	GRCGYC	3 cut(s)	42, 174, 339
Hin1II	CATG	3 cut(s)	277, 400, 580
Hin6I	GCGC	2 cut(s)	100, 518
HinP1I	GCGC	2 cut(s)	100, 518
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	2 cut(s)	584, 654
HinfI	GANTC	3 cut(s)	32, 548, 695
HpaII	CCGG	5 cut(s)	45, 207, 227, 260, 595
HphI	GGTGA	2 cut(s)	259, 685
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	37, 172, 193
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	5 cut(s)	41, 44, 113, 176, 179
HpyAV	CCTTC	5 cut(s)	142, 175, 353, 361, 685
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	9, 54, 439, 533
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 60, 128, 147, 212, 236, 306, 347
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	3 cut(s)	42, 174, 339
Hsp92II	CATG	3 cut(s)	277, 400, 580
HspAI	GCGC	2 cut(s)	100, 518
KroI	GCCGGC	3 cut(s)	44, 206, 226
KroNI	GCCGGC	3 cut(s)	46, 208, 228
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	105, 318, 564, 625
LmnI	GCTCC	4 cut(s)	91, 155, 215, 610
Lsp1109I	GCAGC	2 cut(s)	451, 670
LweI	GCATC	2 cut(s)	187, 451
MaeI	CTAG	2 cut(s)	413, 614
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	107, 320, 566, 627
MboI	GATC	4 cut(s)	105, 318, 564, 625
MboII	GAAGA	2 cut(s)	305, 690
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	60, 195
MroNI	GCCGGC	3 cut(s)	44, 206, 226
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	5 cut(s)	45, 207, 227, 260, 595
MspR9I	CCNGG	4 cut(s)	20, 595, 596, 608
MvaI	CCWGG	2 cut(s)	20, 608
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	8 cut(s)	15, 60, 128, 147, 212, 236, 306, 347
NaeI	GCCGGC	3 cut(s)	46, 208, 228
NciI	CCSGG	2 cut(s)	595, 596
NdeII	GATC	4 cut(s)	105, 318, 564, 625
NgoMIV	GCCGGC	3 cut(s)	44, 206, 226
NlaIII	CATG	3 cut(s)	277, 400, 580
NlaIV	GGNNCC	3 cut(s)	49, 211, 310
NmeAIII	GCCGAG	1 cut(s)	530
NsbI	TGCGCA	1 cut(s)	519
PaqCI	CACCTGC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	3 cut(s)	46, 208, 228
PfeI	GAWTC	2 cut(s)	32, 695
PkrI	GCNGC	2 cut(s)	441, 685
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	18, 606
PspGI	CCWGG	2 cut(s)	18, 606
PspN4I	GGNNCC	3 cut(s)	49, 211, 310
PspPI	GGNCC	2 cut(s)	229, 451
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	417, 605
RsaNI	GTAC	2 cut(s)	416, 604
SacI	GAGCTC	1 cut(s)	96
SatI	GCNGC	2 cut(s)	440, 684
Sau3AI	GATC	4 cut(s)	105, 318, 564, 625
Sau96I	GGNCC	2 cut(s)	229, 451
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	4 cut(s)	20, 595, 596, 608
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	187, 451
SfiI	GGCCNNNNNGGCC	1 cut(s)	236
SinI	GGWCC	1 cut(s)	451
SmaI	CCCGGG	1 cut(s)	596
SmlI	CTYRAG	4 cut(s)	95, 116, 278, 446
SmoI	CTYRAG	4 cut(s)	95, 116, 278, 446
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	4 cut(s)	139, 159, 204, 213
SspMI	CTAG	2 cut(s)	413, 614
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	4 cut(s)	18, 593, 594, 606
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	108, 642
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	32, 695
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	439, 683
TspDTI	ATGAA	2 cut(s)	17, 666
TspGWI	ACGGA	2 cut(s)	487, 691
TspMI	CCCGGG	1 cut(s)	594
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	493
XmaI	CCCGGG	1 cut(s)	594
XspI	CTAG	2 cut(s)	413, 614
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.