pycom15g21980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003134
Physical Location & Seq
Forward (+)
15988461 .. 15989989
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGAAAGCTTCTAAAGATGATCGACATCTTACTGAATTTCGTTATGCTTGTGCTGGTTACTCTGTGTATTTGGATCGAATTACGAAAGACCATTCCGAGGAACAATCAGAATTGCCCGTTTGCTACGGTCTCAAGCTTTTGGTTGGCAAAAGAAAGGTTCAAAAGACACCTGCTGCCGCTCCTGTTTCTGCCCATGTCCATCACAAACGGGATGATCATGAAGTCCCTCAGACTCAGAGGCAGCAACCGACTCAGTCAGCCGGAAGTCTCTTCTTCAACAGGTTTACAAGAAACGCAGATCTTGTTGCATCAGGGGTGACTAAGAACATACGTAGAGTTGGGAAGTACGTAAAAGGAAGTATCTACGAGTTTCTGTACTCGTACAGAGGGCGACCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.23

Weight (kDa)

9.84

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8204 PF26631 1 - 47 4.1e-14 Domain of unknown function (DUF8204)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 178
AccBSI CCGCTC 1 cut(s) 179
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 3 cut(s) 347, 377, 383
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 161, 277
AluBI AGCT 2 cut(s) 8, 136
AluI AGCT 2 cut(s) 8, 136
Alw26I GTCTC 2 cut(s) 134, 272
AlwI GGATC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 173, 241
ApoI RAATTY 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 328
BbvI GCAGC 2 cut(s) 160, 253
BccI CCATC 1 cut(s) 207
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 134, 272
BfuAI ACCTGC 1 cut(s) 178
BglII AGATCT 1 cut(s) 298
BisI GCNGC 3 cut(s) 174, 177, 242
BlsI GCNGC 3 cut(s) 175, 178, 243
BmsI GCATC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 2 cut(s) 332, 349
BsaBI GATNNNNATC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 242, 248, 266
BseXI GCAGC 2 cut(s) 160, 253
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 134, 272
BsmFI GGGAC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 4 cut(s) 19, 73, 214, 298
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 3 cut(s) 241, 247, 265
BspHI TCATGA 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 19, 73, 214, 298
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 275
BstBAI YACGTR 2 cut(s) 332, 349
BstDEI CTNAG 4 cut(s) 228, 234, 252, 321
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 4 cut(s) 22, 76, 217, 301
BstMAI GTCTC 2 cut(s) 134, 272
BstMBI GATC 4 cut(s) 19, 73, 214, 298
BstSNI TACGTA 2 cut(s) 332, 349
BstV1I GCAGC 2 cut(s) 160, 253
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 178
CciI TCATGA 1 cut(s) 217
Csp6I GTAC 3 cut(s) 346, 376, 382
CviAII CATG 2 cut(s) 194, 218
CviJI RGCY 3 cut(s) 8, 136, 260
CviKI_1 RGCY 3 cut(s) 8, 136, 260
CviQI GTAC 3 cut(s) 346, 376, 382
DdeI CTNAG 4 cut(s) 228, 234, 252, 321
DpnI GATC 4 cut(s) 21, 75, 216, 300
DpnII GATC 4 cut(s) 19, 73, 214, 298
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco105I TACGTA 2 cut(s) 332, 349
Eco31I GGTCTC 1 cut(s) 134
FaeI CATG 2 cut(s) 197, 221
FaiI YATR 4 cut(s) 45, 195, 219, 329
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 193, 217
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 174, 177, 242
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 174, 177, 242
GluI GCNGC 3 cut(s) 174, 177, 242
HapII CCGG 1 cut(s) 261
Hin1II CATG 2 cut(s) 197, 221
HindIII AAGCTT 2 cut(s) 6, 134
HinfI GANTC 2 cut(s) 232, 250
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 4 cut(s) 97, 109, 231, 237
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 331, 348
HpyCH4V TGCA 1 cut(s) 308
HpyF3I CTNAG 4 cut(s) 228, 234, 252, 321
HpySE526I ACGT 2 cut(s) 331, 348
Hsp92II CATG 2 cut(s) 197, 221
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 19, 73, 214, 298
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 39, 183, 195, 265, 274, 297
Lsp1109I GCAGC 2 cut(s) 160, 253
LweI GCATC 1 cut(s) 317
MaeII ACGT 2 cut(s) 331, 348
MaeIII GTNAC 2 cut(s) 56, 316
MalI GATC 4 cut(s) 21, 75, 216, 300
MbiI CCGCTC 1 cut(s) 179
MboI GATC 4 cut(s) 19, 73, 214, 298
MboII GAAGA 2 cut(s) 262, 265
MflI RGATCY 1 cut(s) 298
MluCI AATT 3 cut(s) 35, 78, 110
MlyI GAGTC 2 cut(s) 226, 244
MnlI CCTC 4 cut(s) 91, 231, 237, 380
MspI CCGG 1 cut(s) 261
NdeII GATC 4 cut(s) 19, 73, 214, 298
NlaIII CATG 2 cut(s) 197, 221
NmuCI GTSAC 1 cut(s) 316
PagI TCATGA 1 cut(s) 217
PaqCI CACCTGC 1 cut(s) 178
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 3 cut(s) 175, 178, 243
PleI GAGTC 2 cut(s) 226, 244
PpsI GAGTC 2 cut(s) 226, 244
Ppu21I YACGTR 2 cut(s) 332, 349
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 3 cut(s) 347, 377, 383
RsaNI GTAC 3 cut(s) 346, 376, 382
SatI GCNGC 3 cut(s) 174, 177, 242
Sau3AI GATC 4 cut(s) 19, 73, 214, 298
SchI GAGTC 2 cut(s) 226, 244
SetI ASST 7 cut(s) 10, 138, 159, 172, 284, 334, 351
SfaNI GCATC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SnaBI TACGTA 2 cut(s) 332, 349
Sse9I AATT 3 cut(s) 35, 78, 110
SsiI CCGC 1 cut(s) 177
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 334, 351
TaqI TCGA 2 cut(s) 22, 76
TasI AATT 3 cut(s) 35, 78, 110
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 179
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 173, 241
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 17, 234
Tth111I GACNNNGTC 1 cut(s) 253
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.