Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002594

Physical Location & Seq

Genomic Coordinates Forward (+)

23396269 .. 23398143

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCAGACAGCTTTGACTCTGCCACCTCAAACCTTCTATGTGCAGAAAACTCGAATACCTGCTTTGATGATCTTGATTCTAATGCCACAGATGACTTGGGGGACTCCCCATCAATTTCCCACAAAAACAATCAAGACCCCAATTTTGAGCACAACCGTAGATCTAAGTCCACGATAGATTTTCCATCACAGAGTGAAGAGGGTGTGACTGAAATGGTTAAGAGGGAGAGTGAGCATTTGCCCACACACGATTATCTGAGGAGACTGCGTTCTGGGGAATTAGACTTAAGCACTAGAAGGGAGGCCCTTGATTGGATTTGGAAGGCTCATTCCCATTACAGTTTTGGGCCATTGTGTGTTTGGCTGTCTATGAACTACTGGGATCGCTTCCTTTCGCTTTATGAATTGCCTAGAGGTAAAACTTGGGCGGTGCAATTGCTAGCCGTGGCTTGTTTATCAATAGCAGCCAAAGTAGAAGAGACTAATGTACCTCAGTCTGTGGACTTACAGGTTGGAGATCCGAAGTTTGTGTTTGAAGCAAAAACTATACTAAGAATGGAACTACTTGTGATGAGCACCCTAAAATGGAGAATGCAAGCTTGTAGTCCTTACTCTTTCATTGACTACTTCCTCGGCAAGATAAGTGATGATCAACATCCGTTGACACCGTCCATCGGTAGATCAGTACAACTCGTTTTGAGCACAATCGGAGGTATTGACTTTTTGGAATTCAGGCCTTCGGAAATCGCTGCGGCAGTCGCAATTTGTATTTCAGGAGAAATACAAGCACAATCAGTAGACGTCGATAAGGCCATTTCTTGTTTCGTACATGTAGACAAGGAAAGAGTGTTGAAGTGTATTGAACTGATGAAAAATTTGTCATTGATCAGCGGTTCCGCCAATCGGGGAAGCACCTCAGGTCCATCGGTGCCCCCAAGTCCGAATGGGGTGTTGGATGCTGCATGCTTGAGCTCTAAAAGTGATGAATTTATGGTTGGATCATGTGCAAATTCTTCACATAGTAGTCCAGACATTAAGAGGAGGAAACCAGACAACCAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010374 GO:0010440 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

355

Amino Acids

39.25

Weight (kDa)

5.24

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	70 - 198	4.2e-30	Cyclin, N-terminal domain
Cyclin_C	PF02984	202 - 294	2.7e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22490 AT2G22490 AT5G10440 AT5G10440 AT5G65420 AT5G65420 AT5G65420 AT5G65420
fragaria_vesca	FvH4_1g19970 FvH4_5g35800
malus_domestica	MD01G1037500.v1.1 MD08G1193300.v1.1 MD15G1315400.v1.1 MD15G1381900.v1.1
prunus_persica	Prupe.1G527900_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1 Prupe.6G196300_v2.0.a1
pyrus_communis	pycom01g06540 pycom15g27860
rosa_chinensis	RchiOBHm_Chr2g0111911 RchiOBHm_Chr7g0237481
rosa_laevigata	RLG00000000999 RLG00000017937
rosa_multiflora	Rmu_sc0002923.1_g000002 Rmu_sc0006833.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132000 Rroxscaffold_3G00224140
rosa_rugosa	Rorug02G0177000 Rorug07G0303700
rosa_samantha	Rh2AG229400 Rh2BG242100 Rh2BG242200 Rh2CG233500 Rh2DG237100 Rh7BG430900 Rh7CG478300 Rh7DG447600
rosa_wichuraiana	Rw2G017750 Rw7G038150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	928
AccI	GTMKAC	2 cut(s)	798, 834
AciI	CCGC	4 cut(s)	428, 752, 891, 897
AclWI	GGATC	3 cut(s)	390, 512, 1006
AcsI	RAATTY	4 cut(s)	728, 874, 986, 1009
AcyI	GRCGYC	1 cut(s)	801
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	489, 687, 828
AfiI	CCNNNNNNNGG	4 cut(s)	312, 585, 674, 903
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	3 cut(s)	536, 853, 863
AhdI	GACNNNNNGTC	1 cut(s)	1057
AjuI	GAANNNNNNNTTGG	4 cut(s)	935, 967, 978, 1010
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	3 cut(s)	12, 599, 972
AluI	AGCT	3 cut(s)	12, 599, 972
Alw21I	GWGCWC	4 cut(s)	153, 578, 704, 974
Alw26I	GTCTC	2 cut(s)	256, 473
AlwI	GGATC	3 cut(s)	390, 512, 1006
AoxI	GGCC	4 cut(s)	303, 347, 734, 810
ApeKI	GCWGC	3 cut(s)	464, 749, 959
ApoI	RAATTY	4 cut(s)	728, 874, 986, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspS9I	GGNCC	3 cut(s)	304, 347, 920
AsuNHI	GCTAGC	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	920
AxyI	CCTNAGG	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	933
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	1 cut(s)	974
Bbv12I	GWGCWC	4 cut(s)	153, 578, 704, 974
BbvI	GCAGC	3 cut(s)	476, 736, 946
BccI	CCATC	4 cut(s)	118, 193, 680, 931
BceAI	ACGGC	1 cut(s)	428
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BclI	TGATCA	2 cut(s)	649, 885
BcoDI	GTCTC	2 cut(s)	256, 473
BfaI	CTAG	3 cut(s)	294, 411, 440
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	4 cut(s)	465, 750, 753, 960
BlsI	GCNGC	4 cut(s)	466, 751, 754, 961
Bme18I	GGWCC	1 cut(s)	920
BmeRI	GACNNNNNGTC	1 cut(s)	1057
BmgT120I	GGNCC	3 cut(s)	304, 347, 920
BmiI	GGNNCC	2 cut(s)	895, 930
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	1 cut(s)	946
BmtI	GCTAGC	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	988
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	444, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	4 cut(s)	312, 585, 674, 903
Bse1I	ACTGG	2 cut(s)	383, 1057
Bse21I	CCTNAGG	1 cut(s)	916
Bse8I	GATNNNNATC	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	444, 631
BseGI	GGATG	2 cut(s)	655, 961
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	4 cut(s)	312, 585, 674, 903
BseMII	CTCAG	3 cut(s)	248, 506, 930
BseNI	ACTGG	2 cut(s)	383, 1057
BseRI	GAGGAG	2 cut(s)	274, 1054
BseSI	GKGCMC	1 cut(s)	933
BseXI	GCAGC	3 cut(s)	476, 736, 946
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	305, 349, 736, 812
BshNI	GGYRCC	1 cut(s)	928
BsiHKAI	GWGCWC	4 cut(s)	153, 578, 704, 974
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	312, 585, 674, 903
BsmAI	GTCTC	2 cut(s)	256, 473
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	4 cut(s)	305, 349, 736, 812
Bsp1286I	GDGCHC	5 cut(s)	153, 578, 704, 933, 974
Bsp143I	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
BspACI	CCGC	4 cut(s)	428, 752, 891, 897
BspANI	GGCC	4 cut(s)	305, 349, 736, 812
BspCNI	CTCAG	3 cut(s)	249, 505, 929
BspHI	TCATGA	1 cut(s)	1061
BspLI	GGNNCC	2 cut(s)	895, 930
BspMI	ACCTGC	1 cut(s)	68
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	390, 512, 1006
BspT107I	GGYRCC	1 cut(s)	928
BspTI	CTTAAG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	383, 1057
BssECI	CCNNGG	2 cut(s)	444, 631
BssMI	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
BssNI	GRCGYC	1 cut(s)	801
Bst4CI	ACNGT	3 cut(s)	158, 341, 669
Bst6I	CTCTTC	2 cut(s)	192, 471
BstACI	GRCGYC	1 cut(s)	801
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	441, 597, 964
BstDEI	CTNAG	5 cut(s)	165, 257, 492, 551, 916
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	655, 961
BstKTI	GATC	8 cut(s)	73, 164, 385, 520, 652, 683, 888, 1001
BstMAI	GTCTC	2 cut(s)	256, 473
BstMBI	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNSI	RCATGY	2 cut(s)	833, 966
BstSLI	GKGCMC	1 cut(s)	933
BstV1I	GCAGC	3 cut(s)	476, 736, 946
BstX2I	RGATCY	2 cut(s)	161, 517
BstYI	RGATCY	2 cut(s)	161, 517
Bsu36I	CCTNAGG	1 cut(s)	916
BsuRI	GGCC	4 cut(s)	305, 349, 736, 812
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	655, 961
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	3 cut(s)	441, 597, 964
CciI	TCATGA	1 cut(s)	1061
Cfr13I	GGNCC	3 cut(s)	304, 347, 920
Csp6I	GTAC	3 cut(s)	488, 686, 827
CviAII	CATG	4 cut(s)	830, 963, 1002, 1062
CviQI	GTAC	3 cut(s)	488, 686, 827
DdeI	CTNAG	5 cut(s)	165, 257, 492, 551, 916
DpnI	GATC	8 cut(s)	72, 163, 384, 519, 651, 682, 887, 1000
DpnII	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
DraIII	CACNNNGTG	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	1057
Eam1104I	CTCTTC	2 cut(s)	192, 471
Eam1105I	GACNNNNNGTC	1 cut(s)	1057
EarI	CTCTTC	2 cut(s)	192, 471
EciI	GGCGGA	1 cut(s)	886
Ecl136II	GAGCTC	1 cut(s)	972
Eco147I	AGGCCT	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	974
Eco47I	GGWCC	1 cut(s)	920
Eco53kI	GAGCTC	1 cut(s)	972
Eco81I	CCTNAGG	1 cut(s)	916
EcoICRI	GAGCTC	1 cut(s)	972
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	974
FaeI	CATG	4 cut(s)	833, 966, 1005, 1065
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	829, 962, 1001, 1061
FbaI	TGATCA	2 cut(s)	649, 885
FblI	GTMKAC	2 cut(s)	798, 834
Fnu4HI	GCNGC	4 cut(s)	465, 750, 753, 960
FokI	GGATG	2 cut(s)	642, 968
FriOI	GRGCYC	1 cut(s)	974
Fsp4HI	GCNGC	4 cut(s)	465, 750, 753, 960
FspBI	CTAG	3 cut(s)	294, 411, 440
GluI	GCNGC	4 cut(s)	465, 750, 753, 960
HaeIII	GGCC	4 cut(s)	305, 349, 736, 812
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	4 cut(s)	833, 966, 1005, 1065
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	3 cut(s)	17, 77, 104
Hpy166II	GTNNAC	5 cut(s)	171, 502, 663, 799, 835
Hpy188I	TCNGA	5 cut(s)	258, 522, 710, 742, 942
Hpy188III	TCNNGA	5 cut(s)	74, 134, 774, 1028, 1062
Hpy8I	GTNNAC	5 cut(s)	171, 502, 663, 799, 835
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	4 cut(s)	44, 291, 316, 747
HpyCH4III	ACNGT	3 cut(s)	158, 341, 669
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	5 cut(s)	44, 433, 595, 962, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	5 cut(s)	165, 257, 492, 551, 916
HpySE526I	ACGT	1 cut(s)	801
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	4 cut(s)	833, 966, 1005, 1065
Ksp22I	TGATCA	2 cut(s)	649, 885
Kzo9I	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
LpnPI	CCDG	8 cut(s)	73, 258, 364, 494, 718, 759, 903, 1041
Lsp1109I	GCAGC	3 cut(s)	476, 736, 946
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	3 cut(s)	294, 411, 440
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	8 cut(s)	72, 163, 384, 519, 651, 682, 887, 1000
MboI	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
MboII	GAAGA	3 cut(s)	209, 488, 1005
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	2 cut(s)	161, 517
MhlI	GDGCHC	5 cut(s)	153, 578, 704, 933, 974
MlyI	GAGTC	2 cut(s)	11, 98
MmeI	TCCRAC	3 cut(s)	493, 933, 976
MseI	TTAA	3 cut(s)	219, 287, 1035
MspA1I	CMGCKG	1 cut(s)	891
MspCI	CTTAAG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	758
NdeII	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	833, 966, 1005, 1065
NlaIV	GGNNCC	2 cut(s)	895, 930
NmeAIII	GCCGAG	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	833, 966
PaeI	GCATGC	1 cut(s)	966
PagI	TCATGA	1 cut(s)	1061
PceI	AGGCCT	1 cut(s)	736
PciI	ACATGT	1 cut(s)	829
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	667
PkrI	GCNGC	4 cut(s)	466, 751, 754, 961
PleI	GAGTC	2 cut(s)	11, 98
PpsI	GAGTC	2 cut(s)	11, 98
PscI	ACATGT	1 cut(s)	829
Psp124BI	GAGCTC	1 cut(s)	974
PspN4I	GGNNCC	2 cut(s)	895, 930
PspPI	GGNCC	3 cut(s)	304, 347, 920
PsuI	RGATCY	2 cut(s)	161, 517
PsyI	GACNNNGTC	1 cut(s)	667
RsaI	GTAC	3 cut(s)	489, 687, 828
RsaNI	GTAC	3 cut(s)	488, 686, 827
SacI	GAGCTC	1 cut(s)	974
SaqAI	TTAA	3 cut(s)	219, 287, 1035
SatI	GCNGC	4 cut(s)	465, 750, 753, 960
Sau3AI	GATC	8 cut(s)	70, 161, 382, 517, 649, 680, 885, 998
Sau96I	GGNCC	3 cut(s)	304, 347, 920
SchI	GAGTC	2 cut(s)	11, 98
SduI	GDGCHC	5 cut(s)	153, 578, 704, 933, 974
SfaNI	GCATC	1 cut(s)	946
SinI	GGWCC	1 cut(s)	920
SmlI	CTYRAG	2 cut(s)	286, 967
SmoI	CTYRAG	2 cut(s)	286, 967
SphI	GCATGC	1 cut(s)	966
SseBI	AGGCCT	1 cut(s)	736
SsiI	CCGC	4 cut(s)	428, 752, 891, 897
SspMI	CTAG	3 cut(s)	294, 411, 440
SstI	GAGCTC	1 cut(s)	974
StuI	AGGCCT	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	158, 341, 669
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	2 cut(s)	53, 804
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	219, 287, 1035
Tru9I	TTAA	3 cut(s)	219, 287, 1035
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	464, 749, 959
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	5 cut(s)	386, 417, 607, 884, 999
TspGWI	ACGGA	1 cut(s)	648
Tth111I	GACNNNGTC	1 cut(s)	667
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	4 cut(s)	728, 874, 986, 1009
XceI	RCATGY	2 cut(s)	833, 966
XcmI	CCANNNNNNNNNTGG	3 cut(s)	94, 341, 357
XmiI	GTMKAC	2 cut(s)	798, 834
XspI	CTAG	3 cut(s)	294, 411, 440
ZraI	GACGTC	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.