Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Forward (+)

24047091 .. 24051480

Gene Structure 4390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAAATACAAGAGACGGACGAGTATACCTTCGTGGAAAAGAATTCAGAGGTCAAAGAGCAATGGAGGAAGAGGAGCATGAGGTGTACGGAGCAGAGATCCCAGACGAAGGAGATTTGGACGGCGACATGGACGCTCATCACGCCGACGTTGACATGTCCACCGCGGACGCCGCCGCCGTAAAGGAGCTGGACGAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCGGCTCTTCGCGAGATGCAGGCCAAGGTTGAGAAGGAAATGGGCGCTGTTCAAGATCCTGTAATTGCCGCTGCTTCCCAAGCAAACAGGGAAGAGGTGGACGCGCGATCGGTTTTTGTTGGCAACGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGTACGGTCAATAGAGTGACTATACTGACAGATAAGTTTGGCCAACCAAAGGGTTTCGCTTATGTGGAATTTGTGGAAACCGAAGCTGTTCAAGAGGCTCTGGGCCTAAACGAGTCTGAGTTGCACGGCCGGCAATTGAAGGTTTTGCCTAAAAGGACGAATGTTCCTGGTATGAAGCAATACTGGCCGAGACGCTTCAATCCTTACATGGGTTACCGCTTCAGGAGGCCATATGTACCTCCTTACTTCTCGCCCTATGGATATGGGAAGGTTCTGAGGTTCAGAAGGCCAGCTCGATACATGCCGTATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

242

Amino Acids

27.69

Weight (kDa)

5.43

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 184	1.1e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	4 cut(s)	167, 246, 338, 340
AciI	CCGC	8 cut(s)	165, 167, 174, 177, 208, 236, 303, 628
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	2 cut(s)	94, 284
AcoI	YGGCCR	3 cut(s)	451, 538, 596
AcsI	RAATTY	2 cut(s)	44, 479
AcuI	CTGAAG	2 cut(s)	402, 616
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	89, 415, 648
AfiI	CCNNNNNNNGG	3 cut(s)	110, 460, 620
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	214, 287, 503, 550, 610
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	4 cut(s)	190, 233, 497, 704
AluI	AGCT	4 cut(s)	190, 233, 497, 704
Alw26I	GTCTC	2 cut(s)	9, 595
AlwI	GGATC	2 cut(s)	94, 284
AoxI	GGCC	7 cut(s)	255, 451, 514, 538, 596, 638, 698
ApeKI	GCWGC	4 cut(s)	233, 305, 391, 394
ApoI	RAATTY	2 cut(s)	44, 479
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	281, 340
AspS9I	GGNCC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	220, 292, 403, 406
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	4 cut(s)	139, 164, 553, 700
BciT130I	CCWGG	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	9, 595
BfaI	CTAG	1 cut(s)	724
BfoI	RGCGCY	1 cut(s)	282
BisI	GCNGC	8 cut(s)	174, 177, 234, 237, 303, 306, 392, 395
BlsI	GCNGC	8 cut(s)	175, 178, 235, 238, 304, 307, 393, 396
Bme1390I	CCNGG	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	165, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 460, 620
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	165, 258
BseLI	CCNNNNNNNGG	3 cut(s)	110, 460, 620
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	519, 677
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	2 cut(s)	89, 239
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	4 cut(s)	220, 292, 403, 406
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	4 cut(s)	167, 246, 338, 340
Bsh1285I	CGRYCG	2 cut(s)	344, 541
BshFI	GGCC	7 cut(s)	257, 453, 516, 540, 598, 640, 700
BsiEI	CGRYCG	2 cut(s)	344, 541
BsiSI	CCGG	1 cut(s)	541
BslI	CCNNNNNNNGG	3 cut(s)	110, 460, 620
BsmAI	GTCTC	2 cut(s)	9, 595
BsmBI	CGTCTC	2 cut(s)	9, 595
BsnI	GGCC	7 cut(s)	257, 453, 516, 540, 598, 640, 700
Bsp143I	GATC	3 cut(s)	99, 289, 341
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	8 cut(s)	165, 167, 174, 177, 208, 236, 303, 628
BspANI	GGCC	7 cut(s)	257, 453, 516, 540, 598, 640, 700
BspCNI	CTCAG	2 cut(s)	520, 678
BspFNI	CGCG	4 cut(s)	167, 246, 338, 340
BspPI	GGATC	2 cut(s)	94, 284
BspQI	GCTCTTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	2 cut(s)	165, 258
BssMI	GATC	3 cut(s)	99, 289, 341
BssNAI	GTATAC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	3 cut(s)	66, 246, 321
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	255, 373, 542, 702
BstDEI	CTNAG	2 cut(s)	528, 686
BstDSI	CCRYGG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	623
BstFNI	CGCG	4 cut(s)	167, 246, 338, 340
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	281, 340
BstKTI	GATC	3 cut(s)	102, 292, 344
BstMAI	GTCTC	2 cut(s)	9, 595
BstMBI	GATC	3 cut(s)	99, 289, 341
BstMCI	CGRYCG	2 cut(s)	344, 541
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 173, 314, 541, 595
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	3 cut(s)	160, 375, 715
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	577
BstUI	CGCG	4 cut(s)	167, 246, 338, 340
BstV1I	GCAGC	4 cut(s)	220, 292, 403, 406
BstX2I	RGATCY	2 cut(s)	99, 289
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	2 cut(s)	99, 289
BstZ17I	GTATAC	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	538
BsuRI	GGCC	7 cut(s)	257, 453, 516, 540, 598, 640, 700
BtgI	CCRYGG	1 cut(s)	165
BtuMI	TCGCGA	1 cut(s)	246
Cac8I	GCNNGC	4 cut(s)	255, 373, 542, 702
CfoI	GCGC	2 cut(s)	281, 340
Cfr10I	RCCGGY	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	514
Cfr42I	CCGCGG	1 cut(s)	168
CseI	GACGC	4 cut(s)	143, 179, 344, 612
Csp6I	GTAC	3 cut(s)	88, 414, 647
CviAII	CATG	7 cut(s)	80, 130, 157, 372, 408, 619, 712
CviQI	GTAC	3 cut(s)	88, 414, 647
DdeI	CTNAG	2 cut(s)	528, 686
DpnI	GATC	3 cut(s)	101, 291, 343
DpnII	GATC	3 cut(s)	99, 289, 341
EaeI	YGGCCR	3 cut(s)	451, 538, 596
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	3 cut(s)	66, 246, 321
EarI	CTCTTC	3 cut(s)	66, 246, 321
EclXI	CGGCCG	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	258
Eco52I	CGGCCG	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	402, 616
Eco91I	GGTNACC	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	2 cut(s)	9, 595
FaeI	CATG	7 cut(s)	83, 133, 160, 375, 411, 622, 715
FatI	CATG	7 cut(s)	79, 129, 156, 371, 407, 618, 711
FauNDI	CATATG	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	8 cut(s)	174, 177, 234, 237, 303, 306, 392, 395
Fsp4HI	GCNGC	8 cut(s)	174, 177, 234, 237, 303, 306, 392, 395
FspBI	CTAG	1 cut(s)	724
GlaI	GCGC	2 cut(s)	280, 339
GluI	GCNGC	8 cut(s)	174, 177, 234, 237, 303, 306, 392, 395
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	7 cut(s)	257, 453, 516, 540, 598, 640, 700
HapII	CCGG	1 cut(s)	541
HgaI	GACGC	4 cut(s)	143, 179, 344, 612
HhaI	GCGC	2 cut(s)	281, 340
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	7 cut(s)	83, 133, 160, 375, 411, 622, 715
Hin6I	GCGC	2 cut(s)	279, 338
HinP1I	GCGC	2 cut(s)	279, 338
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	1 cut(s)	541
Hpy166II	GTNNAC	5 cut(s)	28, 88, 154, 162, 334
Hpy188I	TCNGA	4 cut(s)	50, 529, 687, 695
Hpy188III	TCNNGA	4 cut(s)	245, 287, 503, 634
Hpy8I	GTNNAC	5 cut(s)	28, 88, 154, 162, 334
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	7 cut(s)	41, 104, 208, 262, 544, 673, 690
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	150, 360
HpyCH4V	TGCA	5 cut(s)	253, 371, 375, 391, 535
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 173, 314, 541, 595
HpyF3I	CTNAG	2 cut(s)	528, 686
HpySE526I	ACGT	2 cut(s)	150, 360
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	7 cut(s)	83, 133, 160, 375, 411, 622, 715
HspAI	GCGC	2 cut(s)	279, 338
KroI	GCCGGC	1 cut(s)	540
KroNI	GCCGGC	1 cut(s)	542
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	99, 289, 341
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	76, 92, 187
Lsp1109I	GCAGC	4 cut(s)	220, 292, 403, 406
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	724
MaeII	ACGT	2 cut(s)	150, 360
MaeIII	GTNAC	2 cut(s)	427, 623
MalI	GATC	3 cut(s)	101, 291, 343
MboI	GATC	3 cut(s)	99, 289, 341
MboII	GAAGA	5 cut(s)	83, 214, 233, 338, 395
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	2 cut(s)	99, 289
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	4 cut(s)	44, 297, 479, 545
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	533
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	373
MroNI	GCCGGC	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	2 cut(s)	167, 305
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	4 cut(s)	167, 246, 338, 340
MwoI	GCNNNNNNNGC	5 cut(s)	143, 173, 314, 541, 595
NaeI	GCCGGC	1 cut(s)	542
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	3 cut(s)	99, 289, 341
NgoMIV	GCCGGC	1 cut(s)	540
NlaIII	CATG	7 cut(s)	83, 133, 160, 375, 411, 622, 715
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	427
NruI	TCGCGA	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	3 cut(s)	160, 375, 715
PaeI	GCATGC	1 cut(s)	375
PciI	ACATGT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	498
PkrI	GCNGC	8 cut(s)	175, 178, 235, 238, 304, 307, 393, 396
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	577
PspEI	GGTNACC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	2 cut(s)	99, 289
PvuI	CGATCG	1 cut(s)	344
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	3 cut(s)	89, 415, 648
RsaNI	GTAC	3 cut(s)	88, 414, 647
SacII	CCGCGG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	8 cut(s)	174, 177, 234, 237, 303, 306, 392, 395
Sau3AI	GATC	3 cut(s)	99, 289, 341
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	240
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	375
Sse9I	AATT	4 cut(s)	44, 297, 479, 545
SsiI	CCGC	8 cut(s)	165, 167, 174, 177, 208, 236, 303, 628
SspMI	CTAG	1 cut(s)	724
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	153, 363
TaqI	TCGA	1 cut(s)	706
TasI	AATT	4 cut(s)	44, 297, 479, 545
TauI	GCSGC	4 cut(s)	176, 179, 239, 305
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	4 cut(s)	233, 305, 391, 394
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	215, 599
TspGWI	ACGGA	2 cut(s)	33, 105
XapI	RAATTY	2 cut(s)	44, 479
XceI	RCATGY	3 cut(s)	160, 375, 715
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	1 cut(s)	724
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.