Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002915

Physical Location & Seq

Genomic Coordinates Reverse (-)

33715417 .. 33716199

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGTTGCAGGCGGCGCCACCAGGTTACGCCTCTGTTGCGGCGAGTTCCAGGCCCAAAATGGGGCCCACAGGCGAGGGGGCTGCCCCCAGCGCTCGAAAAAGGGGAACCGCCGCAACACCCAACTCCACCACGACCACCACTGCCGTATCCACCATGGTCAGGTACAGAGAGTGCCTCAAGAACCACGCCATCGGCCTCGGCGGCCATGCCCTCGACGGCTGTGGGGAGTTTCTCGCTGCGGGAGACGAGGGCACCCTCGATGCCTTAAAATGCGCCGCCTGCAATTGCCACCGCAACTTCCACCGCAAGGAGCCCGAGGCCGAGTTAATTCATCACCAACAGGGTGCCGGTGGGTCCCACCTCCTTCACCACCACCACCATCCGCACCAATTCTCCTCAGGCTACTATCGCCCGCCGCCACCTTCGGGCTATCTGATCACCTCGCCCCACGCAAGGCCGACACTGGCCTTGCCTGCCGCATCAGGCGGCGGCGGAGGGTCTCATAGTAGGGAAGAGGGAGAGGACGTGTCGAATCCGAGTTCGAGCGGCGGTGGAGGCGGAGGAGGATTCGGGATGAGCAAGAAGAGACACCGGACAAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAGTTCGCGGAGAAAGTTGGGTGGAGAATTCAGAAACATGACGAAGCAGCGATTGAGGAGTTTTGCTCAGAGAACGGAGTGAAGCGCCATGTGTTCAAGGTTTGGATGCACAACAACAAGCACACTCTTGGTAAGAAATTAGTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

261

Amino Acids

27.77

Weight (kDa)

9.12

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	54 - 106	2e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24660 AT4G24660 AT5G65410
fragaria_vesca	FvH4_1g20040 FvH4_5g35900 FvH4_5g35900 FvH4_5g35900
malus_domestica	MD01G1037200.v1.1 MD08G1192300.v1.1 MD15G1316100.v1.1 MD15G1380900.v1.1
prunus_persica	Prupe.1G527100_v2.0.a1 Prupe.6G196000_v2.0.a1 Prupe.6G196000_v2.0.a1
pyrus_communis	pycom01g06490 pycom08g16600 pycom15g27900 pycom15g34140
rosa_chinensis	RchiOBHm_Chr2g0112031 RchiOBHm_Chr7g0237621
rosa_laevigata	RLG00000000984 RLG00000017943
rosa_multiflora	Rmu_sc0007826.1_g000021 Rmu_sc0011702.1_g000003
rosa_roxburghii	Rroxscaffold_2G00131860 Rroxscaffold_3G00223920
rosa_rugosa	Rorug02G0177900 Rorug07G0305700
rosa_samantha	Rh2AG230000 Rh2BG243000 Rh2CG234200 Rh2DG237800 Rh7AG462100 Rh7BG432300 Rh7CG479200 Rh7DG448300
rosa_wichuraiana	Rw2G017810 Rw7G038250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	16, 254, 347
AccBSI	CCGCTC	1 cut(s)	549
AccII	CGCG	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	6 cut(s)	62, 63, 162, 310, 428, 456
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	1 cut(s)	730
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	2 cut(s)	22, 50
Alw26I	GTCTC	3 cut(s)	240, 507, 583
Ama87I	CYCGRG	1 cut(s)	317
Aor51HI	AGCGCT	1 cut(s)	94
AoxI	GGCC	7 cut(s)	53, 65, 196, 205, 321, 458, 468
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	3 cut(s)	83, 239, 680
ApoI	RAATTY	1 cut(s)	660
AspLEI	GCGC	4 cut(s)	19, 95, 278, 720
AspS9I	GGNCC	4 cut(s)	54, 65, 66, 357
AsuHPI	GGTGA	3 cut(s)	329, 362, 433
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	357
AxyI	CCTNAGG	1 cut(s)	400
BaeGI	GKGCMC	3 cut(s)	69, 257, 780
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BanI	GGYRCC	3 cut(s)	16, 254, 347
BanII	GRGCYC	2 cut(s)	69, 318
BbvI	GCAGC	3 cut(s)	70, 226, 692
BccI	CCATC	2 cut(s)	200, 390
BceAI	ACGGC	2 cut(s)	131, 235
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	2 cut(s)	24, 52
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	3 cut(s)	240, 507, 583
BfoI	RGCGCY	3 cut(s)	20, 96, 721
BfuI	GTATCC	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	24, 52
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	4 cut(s)	54, 65, 66, 357
BmiI	GGNNCC	9 cut(s)	18, 66, 67, 109, 256, 315, 349, 358, 359
BmrFI	CCNGG	2 cut(s)	24, 52
BmsI	GCATC	4 cut(s)	253, 491, 618, 729
BplI	GAGNNNNNCTC	4 cut(s)	162, 194, 683, 715
BpmI	CTGGAG	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	156, 199, 318
BsaWI	WCCGGW	1 cut(s)	594
BsaXI	ACNNNNNCTCC	4 cut(s)	380, 410, 513, 543
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 63, 162, 310, 428, 456
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	24, 52
BseDI	CCNNGG	3 cut(s)	156, 199, 318
BseGI	GGATG	3 cut(s)	382, 582, 744
BseLI	CCNNNNNNNGG	6 cut(s)	62, 63, 162, 310, 428, 456
BseMII	CTCAG	2 cut(s)	414, 714
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	3 cut(s)	388, 579, 704
BseSI	GKGCMC	3 cut(s)	69, 257, 780
BseXI	GCAGC	3 cut(s)	70, 226, 692
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	7 cut(s)	55, 67, 198, 207, 323, 460, 470
BshNI	GGYRCC	3 cut(s)	16, 254, 347
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	351, 595
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	6 cut(s)	62, 63, 162, 310, 428, 456
BsmAI	GTCTC	3 cut(s)	240, 507, 583
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	7 cut(s)	55, 67, 198, 207, 323, 460, 470
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	1 cut(s)	317
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	4 cut(s)	69, 257, 318, 780
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	7 cut(s)	55, 67, 198, 207, 323, 460, 470
BspCNI	CTCAG	2 cut(s)	413, 713
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	9 cut(s)	18, 66, 67, 109, 256, 315, 349, 358, 359
BspT107I	GGYRCC	3 cut(s)	16, 254, 347
BspTNI	GGTCTC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	471
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	156, 199, 318
BssMI	GATC	1 cut(s)	438
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	24, 52
Bst6I	CTCTTC	2 cut(s)	510, 581
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	12, 283, 416, 477
BstDEI	CTNAG	2 cut(s)	400, 700
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	382, 582, 744
BstFNI	CGCG	1 cut(s)	641
BstH2I	RGCGCY	3 cut(s)	20, 96, 721
BstHHI	GCGC	4 cut(s)	19, 95, 278, 720
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	3 cut(s)	240, 507, 583
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 38, 92, 204, 282, 411, 476, 558
BstNI	CCWGG	2 cut(s)	24, 52
BstSCI	CCNGG	2 cut(s)	22, 50
BstSLI	GKGCMC	3 cut(s)	69, 257, 780
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	3 cut(s)	70, 226, 692
Bsu36I	CCTNAGG	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	7 cut(s)	55, 67, 198, 207, 323, 460, 470
BtgI	CCRYGG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	382, 582, 744
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	141, 464
Cac8I	GCNNGC	4 cut(s)	12, 283, 416, 477
CfoI	GCGC	4 cut(s)	19, 95, 278, 720
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	4 cut(s)	54, 65, 66, 357
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	4 cut(s)	157, 209, 671, 722
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	400, 700
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	510, 581
EarI	CTCTTC	2 cut(s)	510, 581
EciI	GGCGGA	2 cut(s)	510, 576
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	69, 318
Eco31I	GGTCTC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	65, 357
EcoRI	GAATTC	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	22, 50
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	69, 318
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	4 cut(s)	160, 212, 674, 725
FaiI	YATR	5 cut(s)	158, 210, 507, 672, 723
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	156, 208, 670, 721
FauI	CCCGC	2 cut(s)	235, 423
FbaI	TGATCA	1 cut(s)	438
FokI	GGATG	3 cut(s)	369, 589, 751
FriOI	GRGCYC	2 cut(s)	69, 318
GlaI	GCGC	4 cut(s)	18, 94, 277, 719
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	3 cut(s)	20, 96, 721
HaeIII	GGCC	7 cut(s)	55, 67, 198, 207, 323, 460, 470
HapII	CCGG	2 cut(s)	351, 595
HhaI	GCGC	4 cut(s)	19, 95, 278, 720
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	160, 212, 674, 725
Hin6I	GCGC	4 cut(s)	17, 93, 276, 718
HinP1I	GCGC	4 cut(s)	17, 93, 276, 718
HinfI	GANTC	2 cut(s)	535, 570
HpaII	CCGG	2 cut(s)	351, 595
HphI	GGTGA	3 cut(s)	329, 362, 433
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	4 cut(s)	438, 540, 666, 703
Hpy188III	TCNNGA	2 cut(s)	181, 574
Hpy8I	GTNNAC	1 cut(s)	606
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	377, 435, 613
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	3 cut(s)	10, 285, 742
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 38, 92, 204, 282, 411, 476, 558
HpyF3I	CTNAG	2 cut(s)	400, 700
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	160, 212, 674, 725
HspAI	GCGC	4 cut(s)	17, 93, 276, 718
KasI	GGCGCC	1 cut(s)	16
KflI	GGGWCCC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	313, 613
Lsp1109I	GCAGC	3 cut(s)	70, 226, 692
LweI	GCATC	4 cut(s)	253, 491, 618, 729
MabI	ACCWGGT	1 cut(s)	22
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	440
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	1 cut(s)	438
MboII	GAAGA	3 cut(s)	527, 598, 637
MfeI	CAATTG	1 cut(s)	286
MhlI	GDGCHC	4 cut(s)	69, 257, 318, 780
MluCI	AATT	5 cut(s)	286, 330, 392, 660, 770
Mly113I	GGCGCC	1 cut(s)	17
MseI	TTAA	2 cut(s)	269, 329
MspI	CCGG	2 cut(s)	351, 595
MspR9I	CCNGG	2 cut(s)	24, 52
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	2 cut(s)	24, 52
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	8 cut(s)	16, 38, 92, 204, 282, 411, 476, 558
NarI	GGCGCC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	4 cut(s)	160, 212, 674, 725
NlaIV	GGNNCC	9 cut(s)	18, 66, 67, 109, 256, 315, 349, 358, 359
NmeAIII	GCCGAG	2 cut(s)	180, 349
PfeI	GAWTC	2 cut(s)	535, 570
PluTI	GGCGCC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	22, 50
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	22, 50
PspN4I	GGNNCC	9 cut(s)	18, 66, 67, 109, 256, 315, 349, 358, 359
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	4 cut(s)	54, 65, 66, 357
PspPPI	RGGWCCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	269, 329
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	4 cut(s)	54, 65, 66, 357
ScrFI	CCNGG	2 cut(s)	24, 52
SduI	GDGCHC	4 cut(s)	69, 257, 318, 780
SetI	ASST	7 cut(s)	28, 167, 366, 427, 446, 531, 735
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	4 cut(s)	253, 491, 618, 729
SfiI	GGCCNNNNNGGCC	1 cut(s)	204
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	286, 330, 392, 660, 770
SspDI	GGCGCC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	22, 50
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	5 cut(s)	97, 216, 261, 533, 545
TasI	AATT	5 cut(s)	286, 330, 392, 660, 770
TfiI	GAWTC	2 cut(s)	535, 570
Tru1I	TTAA	2 cut(s)	269, 329
Tru9I	TTAA	2 cut(s)	269, 329
TscAI	CASTG	2 cut(s)	148, 471
TseI	GCWGC	3 cut(s)	83, 239, 680
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	2 cut(s)	148, 471
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.