pycom15g37260

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004760
Physical Location & Seq
Forward (+)
37171959 .. 37174955
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGGCATCAAGAGCCAACCCAAACCCGAACCGCAACCCAATCCCAAACGGAAACGCAACCGCAAACGGCGACCACAGACCCGGTGCCCCACCGCCACGACAACCGCCGTCGCCCTCCTCCTCTTCAAACCCCCACAACAGAAGCAACCACCGCCACTACTACCCCACGACGTCGTCATCCTCCTCCTCTGCTTCCTTCAAGGGCTGCTGCTGCTGCCTCTTCTTACTCTTCTCCTTCCTAGCCCTCCTCGTCCTCGCCGTCGTCCTCGTCATCGTCCTCGCCCTCAAGCCGAAGAAGCCGCAGTTCGATCTCCAGCAAGTGGGCGTCCAGTACATGGGCATCAACTCACCCAATCCCACCGCAACCGCCGACCCCAACCAAAACCCTACCTCCGCCTCCCTCTCCCTCAACATTCGCATGCTCTTCTCCGCCGCTAACCCCAACAAGGTAGGGATCAAGTACGGCGAGTCCAGGTTCACTGTCATGTACCGCGGGATCCCATTGGGCAAGGCCTCCATCCCCGGCTTCTACCAGGACGCCCACACTGTCCGCCAAGTCGTCGCCACCATCGCCGTCGATCGGGTCAATTTGCTCCAAGCCGACGCCGCCGATTTAGTCCGAGACGCTTCACTCAACGACCGAGTCGAGCTCAGGGTCCTGGGTGACGTTGGCGCCAAGATCCGCGTCTTGAACTTCGATTCCCCAGGCGTTCAGAATTCGTCTCCTCTTTGTGTCGGTGGACTGTGCGATTGTCATAAGTCCAAGGAAGCAATCTCTTTCATACAAGCAGTGTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

267

Amino Acids

28.55

Weight (kDa)

9.48

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 142 - 224 6.4e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 173
AccB1I GGYRCC 2 cut(s) 83, 671
AccB7I CCANNNNNTGG 2 cut(s) 319, 334
AccII CGCG 2 cut(s) 492, 684
AclWI GGATC 4 cut(s) 461, 490, 503, 673
AcsI RAATTY 1 cut(s) 715
AcyI GRCGYC 5 cut(s) 170, 324, 537, 603, 672
AfaI GTAC 3 cut(s) 332, 461, 488
AfiI CCNNNNNNNGG 4 cut(s) 319, 334, 445, 579
AgsI TTSAA 3 cut(s) 126, 199, 691
AjnI CCWGG 4 cut(s) 470, 531, 657, 703
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 1 cut(s) 649
AluI AGCT 1 cut(s) 649
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 2 cut(s) 615, 726
AlwI GGATC 4 cut(s) 461, 490, 503, 673
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 4 cut(s) 204, 207, 210, 213
ApoI RAATTY 1 cut(s) 715
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 1 cut(s) 655
AsuC2I CCSGG 2 cut(s) 81, 522
AsuHPI GGTGA 2 cut(s) 339, 674
AvaII GGWCC 1 cut(s) 655
BaeGI GKGCMC 1 cut(s) 88
BamHI GGATCC 1 cut(s) 495
BanI GGYRCC 2 cut(s) 83, 671
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 4 cut(s) 191, 194, 197, 200
BccI CCATC 2 cut(s) 524, 575
BceAI ACGGC 5 cut(s) 82, 91, 242, 478, 557
BciT130I CCWGG 4 cut(s) 472, 533, 659, 705
BcnI CCSGG 2 cut(s) 81, 522
BcoDI GTCTC 2 cut(s) 615, 726
BfaI CTAG 1 cut(s) 239
BfoI RGCGCY 1 cut(s) 675
BisI GCNGC 7 cut(s) 205, 208, 211, 214, 299, 432, 606
BlsI GCNGC 7 cut(s) 206, 209, 212, 215, 300, 433, 607
Bme1390I CCNGG 6 cut(s) 81, 472, 522, 533, 659, 705
Bme18I GGWCC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 655
BmiI GGNNCC 4 cut(s) 85, 497, 656, 673
BmrFI CCNGG 6 cut(s) 81, 472, 522, 533, 659, 705
BmsI GCATC 2 cut(s) 14, 348
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 81, 522
BsaHI GRCGYC 5 cut(s) 170, 324, 537, 603, 672
BsaJI CCNNGG 5 cut(s) 490, 520, 658, 703, 762
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 334, 445, 579
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 4 cut(s) 472, 533, 659, 705
BseDI CCNNGG 5 cut(s) 490, 520, 658, 703, 762
BseGI GGATG 2 cut(s) 176, 516
BseLI CCNNNNNNNGG 4 cut(s) 319, 334, 445, 579
BseMII CTCAG 1 cut(s) 664
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 6 cut(s) 106, 109, 172, 175, 236, 714
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 4 cut(s) 191, 194, 197, 200
Bsh1236I CGCG 2 cut(s) 492, 684
Bsh1285I CGRYCG 2 cut(s) 580, 640
BshFI GGCC 1 cut(s) 512
BshNI GGYRCC 2 cut(s) 83, 671
BsiEI CGRYCG 2 cut(s) 580, 640
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 2 cut(s) 81, 522
BslI CCNNNNNNNGG 4 cut(s) 319, 334, 445, 579
BsmAI GTCTC 2 cut(s) 615, 726
BsmBI CGTCTC 2 cut(s) 615, 726
BsnI GGCC 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 88, 651
Bsp143I GATC 5 cut(s) 307, 453, 495, 577, 678
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 663
BspFNI CGCG 2 cut(s) 492, 684
BspLI GGNNCC 4 cut(s) 85, 497, 656, 673
BspPI GGATC 4 cut(s) 461, 490, 503, 673
BspQI GCTCTTC 1 cut(s) 428
BspT107I GGYRCC 2 cut(s) 83, 671
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 5 cut(s) 490, 520, 658, 703, 762
BssMI GATC 5 cut(s) 307, 453, 495, 577, 678
BssNI GRCGYC 5 cut(s) 170, 324, 537, 603, 672
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 4 cut(s) 472, 533, 659, 705
Bst4CI ACNGT 3 cut(s) 481, 547, 744
Bst6I CTCTTC 4 cut(s) 127, 224, 233, 428
BstACI GRCGYC 5 cut(s) 170, 324, 537, 603, 672
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 1 cut(s) 650
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 2 cut(s) 176, 516
BstFNI CGCG 2 cut(s) 492, 684
BstH2I RGCGCY 1 cut(s) 675
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 5 cut(s) 310, 456, 498, 580, 681
BstMAI GTCTC 2 cut(s) 615, 726
BstMBI GATC 5 cut(s) 307, 453, 495, 577, 678
BstMCI CGRYCG 2 cut(s) 580, 640
BstMWI GCNNNNNNNGC 7 cut(s) 11, 150, 210, 213, 295, 569, 605
BstNI CCWGG 4 cut(s) 472, 533, 659, 705
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 6 cut(s) 79, 470, 520, 531, 657, 703
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 2 cut(s) 492, 684
BstV1I GCAGC 4 cut(s) 191, 194, 197, 200
BstX2I RGATCY 2 cut(s) 495, 678
BstYI RGATCY 2 cut(s) 495, 678
BsuRI GGCC 1 cut(s) 512
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 553
BtsCI GGATG 2 cut(s) 176, 516
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 3 cut(s) 477, 543, 795
Cac8I GCNNGC 1 cut(s) 419
CfoI GCGC 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 655
Cfr42I CCGCGG 1 cut(s) 493
CseI GACGC 5 cut(s) 313, 545, 611, 632, 673
Csp6I GTAC 3 cut(s) 331, 460, 487
CspCI CAANNNNNGTGG 1 cut(s) 773
CviAII CATG 3 cut(s) 334, 418, 484
CviJI RGCY 9 cut(s) 14, 204, 242, 289, 298, 512, 525, 599, 649
CviKI_1 RGCY 9 cut(s) 14, 204, 242, 289, 298, 512, 525, 599, 649
CviQI GTAC 3 cut(s) 331, 460, 487
DdeI CTNAG 1 cut(s) 650
DinI GGCGCC 1 cut(s) 673
DpnI GATC 5 cut(s) 309, 455, 497, 579, 680
DpnII GATC 5 cut(s) 307, 453, 495, 577, 678
Eam1104I CTCTTC 4 cut(s) 127, 224, 233, 428
EarI CTCTTC 4 cut(s) 127, 224, 233, 428
EciI GGCGGA 3 cut(s) 382, 418, 539
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 1 cut(s) 762
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 655
Eco53kI GAGCTC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 649
EcoO109I RGGNCCY 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 715
EcoRII CCWGG 4 cut(s) 470, 531, 657, 703
EcoT14I CCWWGG 1 cut(s) 762
EcoT38I GRGCYC 1 cut(s) 651
EgeI GGCGCC 1 cut(s) 673
EheI GGCGCC 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 762
Esp3I CGTCTC 2 cut(s) 615, 726
FaeI CATG 3 cut(s) 337, 421, 487
FaiI YATR 5 cut(s) 335, 419, 485, 756, 782
FatI CATG 3 cut(s) 333, 417, 483
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 7 cut(s) 205, 208, 211, 214, 299, 432, 606
FokI GGATG 2 cut(s) 163, 503
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 7 cut(s) 205, 208, 211, 214, 299, 432, 606
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 673
GluI GCNGC 7 cut(s) 205, 208, 211, 214, 299, 432, 606
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 675
HaeIII GGCC 1 cut(s) 512
HapII CCGG 2 cut(s) 81, 522
HgaI GACGC 5 cut(s) 313, 545, 611, 632, 673
HhaI GCGC 1 cut(s) 674
Hin1I GRCGYC 5 cut(s) 170, 324, 537, 603, 672
Hin1II CATG 3 cut(s) 337, 421, 487
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HinfI GANTC 3 cut(s) 467, 642, 698
HpaII CCGG 2 cut(s) 81, 522
HphI GGTGA 2 cut(s) 339, 674
Hpy166II GTNNAC 2 cut(s) 477, 740
Hpy188I TCNGA 2 cut(s) 620, 714
Hpy188III TCNNGA 2 cut(s) 9, 688
Hpy8I GTNNAC 2 cut(s) 477, 740
Hpy99I CGWCG 7 cut(s) 112, 172, 175, 263, 563, 578, 605
HpyAV CCTTC 2 cut(s) 205, 244
HpyCH4III ACNGT 3 cut(s) 481, 547, 744
HpyCH4IV ACGT 2 cut(s) 170, 666
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 150, 210, 213, 295, 569, 605
HpyF3I CTNAG 1 cut(s) 650
HpySE526I ACGT 2 cut(s) 170, 666
Hsp92I GRCGYC 5 cut(s) 170, 324, 537, 603, 672
Hsp92II CATG 3 cut(s) 337, 421, 487
HspAI GCGC 1 cut(s) 672
KasI GGCGCC 1 cut(s) 671
KspI CCGCGG 1 cut(s) 493
Kzo9I GATC 5 cut(s) 307, 453, 495, 577, 678
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 597
Lsp1109I GCAGC 4 cut(s) 191, 194, 197, 200
LweI GCATC 2 cut(s) 14, 348
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 170, 666
MaeIII GTNAC 1 cut(s) 662
MalI GATC 5 cut(s) 309, 455, 497, 579, 680
MboI GATC 5 cut(s) 307, 453, 495, 577, 678
MboII GAAGA 5 cut(s) 114, 211, 220, 304, 415
MflI RGATCY 2 cut(s) 495, 678
MhlI GDGCHC 2 cut(s) 88, 651
MluCI AATT 2 cut(s) 586, 715
Mly113I GGCGCC 1 cut(s) 672
MlyI GAGTC 2 cut(s) 476, 651
MslI CAYNNNNRTG 2 cut(s) 416, 482
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 2 cut(s) 81, 522
MspR9I CCNGG 6 cut(s) 81, 472, 522, 533, 659, 705
MvaI CCWGG 4 cut(s) 472, 533, 659, 705
MvnI CGCG 2 cut(s) 492, 684
MwoI GCNNNNNNNGC 7 cut(s) 11, 150, 210, 213, 295, 569, 605
NarI GGCGCC 1 cut(s) 672
NciI CCSGG 2 cut(s) 81, 522
NdeII GATC 5 cut(s) 307, 453, 495, 577, 678
NlaIII CATG 3 cut(s) 337, 421, 487
NlaIV GGNNCC 4 cut(s) 85, 497, 656, 673
NmuCI GTSAC 1 cut(s) 662
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PceI AGGCCT 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 428
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 642
PfeI GAWTC 1 cut(s) 698
PflFI GACNNNGTC 2 cut(s) 172, 641
PflMI CCANNNNNTGG 2 cut(s) 319, 334
PkrI GCNGC 7 cut(s) 206, 209, 212, 215, 300, 433, 607
Ple19I CGATCG 1 cut(s) 580
PleI GAGTC 2 cut(s) 475, 650
PluTI GGCGCC 1 cut(s) 675
PpsI GAGTC 2 cut(s) 475, 650
PpuMI RGGWCCY 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 651
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 4 cut(s) 470, 531, 657, 703
PspGI CCWGG 4 cut(s) 470, 531, 657, 703
PspN4I GGNNCC 4 cut(s) 85, 497, 656, 673
PspPI GGNCC 1 cut(s) 655
PspPPI RGGWCCY 1 cut(s) 655
PsuI RGATCY 2 cut(s) 495, 678
PsyI GACNNNGTC 2 cut(s) 172, 641
PvuI CGATCG 1 cut(s) 580
RsaI GTAC 3 cut(s) 332, 461, 488
RsaNI GTAC 3 cut(s) 331, 460, 487
RseI CAYNNNNRTG 2 cut(s) 416, 482
SacI GAGCTC 1 cut(s) 651
SacII CCGCGG 1 cut(s) 493
SapI GCTCTTC 1 cut(s) 428
SatI GCNGC 7 cut(s) 205, 208, 211, 214, 299, 432, 606
Sau3AI GATC 5 cut(s) 307, 453, 495, 577, 678
Sau96I GGNCC 1 cut(s) 655
SchI GAGTC 2 cut(s) 476, 651
ScrFI CCNGG 6 cut(s) 81, 472, 522, 533, 659, 705
SduI GDGCHC 2 cut(s) 88, 651
SetI ASST 6 cut(s) 173, 392, 450, 476, 651, 669
SfaNI GCATC 2 cut(s) 14, 348
SfoI GGCGCC 1 cut(s) 673
Sfr303I CCGCGG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 493
SinI GGWCC 1 cut(s) 655
SmiMI CAYNNNNRTG 2 cut(s) 416, 482
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 421
Sse9I AATT 2 cut(s) 586, 715
SseBI AGGCCT 1 cut(s) 512
SspDI GGCGCC 1 cut(s) 671
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 651
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 6 cut(s) 79, 470, 520, 531, 657, 703
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 3 cut(s) 481, 547, 744
TaiI ACGT 2 cut(s) 173, 669
TaqI TCGA 4 cut(s) 306, 576, 645, 696
TaqII GACCGA 1 cut(s) 654
TasI AATT 2 cut(s) 586, 715
TatI WGTACW 1 cut(s) 330
TauI GCSGC 3 cut(s) 301, 434, 608
TfiI GAWTC 1 cut(s) 698
TscAI CASTG 3 cut(s) 484, 550, 795
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 4 cut(s) 204, 207, 210, 213
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 1 cut(s) 769
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 3 cut(s) 484, 550, 795
Tth111I GACNNNGTC 2 cut(s) 172, 641
Van91I CCANNNNNTGG 2 cut(s) 319, 334
VpaK11BI GGWCC 1 cut(s) 655
XapI RAATTY 1 cut(s) 715
XceI RCATGY 1 cut(s) 421
XspI CTAG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.